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Items: 10


A most wanted list of conserved microbial protein families with no known domains.

Wyman SK, Avila-Herrera A, Nayfach S, Pollard KS.

PLoS One. 2018 Oct 17;13(10):e0205749. doi: 10.1371/journal.pone.0205749. eCollection 2018.


Single-cell genomics of co-sorted Nanoarchaeota suggests novel putative host associations and diversification of proteins involved in symbiosis.

Jarett JK, Nayfach S, Podar M, Inskeep W, Ivanova NN, Munson-McGee J, Schulz F, Young M, Jay ZJ, Beam JP, Kyrpides NC, Malmstrom RR, Stepanauskas R, Woyke T.

Microbiome. 2018 Sep 17;6(1):161. doi: 10.1186/s40168-018-0539-8.


Phylogeny-corrected identification of microbial gene families relevant to human gut colonization.

Bradley PH, Nayfach S, Pollard KS.

PLoS Comput Biol. 2018 Aug 9;14(8):e1006242. doi: 10.1371/journal.pcbi.1006242. eCollection 2018 Aug.


Discovery of Reactive Microbiota-Derived Metabolites that Inhibit Host Proteases.

Guo CJ, Chang FY, Wyche TP, Backus KM, Acker TM, Funabashi M, Taketani M, Donia MS, Nayfach S, Pollard KS, Craik CS, Cravatt BF, Clardy J, Voigt CA, Fischbach MA.

Cell. 2017 Jan 26;168(3):517-526.e18. doi: 10.1016/j.cell.2016.12.021. Epub 2017 Jan 19.


Modulation of a Circulating Uremic Solute via Rational Genetic Manipulation of the Gut Microbiota.

Devlin AS, Marcobal A, Dodd D, Nayfach S, Plummer N, Meyer T, Pollard KS, Sonnenburg JL, Fischbach MA.

Cell Host Microbe. 2016 Dec 14;20(6):709-715. doi: 10.1016/j.chom.2016.10.021. Epub 2016 Dec 1.


An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography.

Nayfach S, Rodriguez-Mueller B, Garud N, Pollard KS.

Genome Res. 2016 Nov;26(11):1612-1625. Epub 2016 Oct 18.


Toward Accurate and Quantitative Comparative Metagenomics.

Nayfach S, Pollard KS.

Cell. 2016 Aug 25;166(5):1103-1116. doi: 10.1016/j.cell.2016.08.007. Review.


Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes.

Nayfach S, Bradley PH, Wyman SK, Laurent TJ, Williams A, Eisen JA, Pollard KS, Sharpton TJ.

PLoS Comput Biol. 2015 Nov 13;11(11):e1004573. doi: 10.1371/journal.pcbi.1004573. eCollection 2015 Nov.


MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome.

Nayfach S, Fischbach MA, Pollard KS.

Bioinformatics. 2015 Oct 15;31(20):3368-70. doi: 10.1093/bioinformatics/btv382. Epub 2015 Jun 22.


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