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Cardiomyogenic differentiation is fine-tuned by differential mRNA association with polysomes.

Pereira IT, Spangenberg L, Robert AW, Amorín R, Stimamiglio MA, Naya H, Dallagiovanna B.

BMC Genomics. 2019 Mar 15;20(1):219. doi: 10.1186/s12864-019-5550-3.


Polysome profiling followed by RNA-seq of cardiac differentiation stages in hESCs.

Pereira IT, Spangenberg L, Robert AW, Amorín R, Stimamiglio MA, Naya H, Dallagiovanna B.

Sci Data. 2018 Dec 4;5:180287. doi: 10.1038/sdata.2018.287.


Deep sequencing discovery of causal mtDNA mutations in a patient with unspecific neurological disease.

Spangenberg L, Graña M, Mansilla S, Martínez J, Tapié A, Greif G, Montano N, Vaglio A, Gueçaimburú R, Robello C, Castro L, Quijano C, Raggio V, Naya H.

Mitochondrion. 2019 May;46:337-344. doi: 10.1016/j.mito.2018.09.004. Epub 2018 Sep 15.


On the Interplay among Ambient Temperature, Basal Metabolic Rate, and Body Mass.

Naya DE, Naya H, White CR.

Am Nat. 2018 Oct;192(4):518-524. doi: 10.1086/698372. Epub 2018 Jul 10.


Prediction of Complex Traits: Robust Alternatives to Best Linear Unbiased Prediction.

Gianola D, Cecchinato A, Naya H, Schön CC.

Front Genet. 2018 Jun 5;9:195. doi: 10.3389/fgene.2018.00195. eCollection 2018.


Sequencing and Annotation of the Genome of Mycobacterium tuberculosis MYC004, a Strain Causing Meningitis in Mexico.

Guillén-Nepita AL, Negrete-Paz AM, Vázquez-Marrufo G, Cruz-Hernández A, Fresia P, Naya H, Vázquez-Garcidueñas MS.

Genome Announc. 2018 Jun 21;6(25). pii: e00523-18. doi: 10.1128/genomeA.00523-18.


Gene expression analysis of human adipose tissue-derived stem cells during the initial steps of in vitro osteogenesis.

Robert AW, Angulski ABB, Spangenberg L, Shigunov P, Pereira IT, Bettes PSL, Naya H, Correa A, Dallagiovanna B, Stimamiglio MA.

Sci Rep. 2018 Mar 16;8(1):4739. doi: 10.1038/s41598-018-22991-6.


Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates.

Lasserre M, Fresia P, Greif G, Iraola G, Castro-Ramos M, Juambeltz A, Nuñez Á, Naya H, Robello C, Berná L.

BMC Genomics. 2018 Jan 2;19(1):2. doi: 10.1186/s12864-017-4249-6.


Distinct Campylobacter fetus lineages adapted as livestock pathogens and human pathobionts in the intestinal microbiota.

Iraola G, Forster SC, Kumar N, Lehours P, Bekal S, García-Peña FJ, Paolicchi F, Morsella C, Hotzel H, Hsueh PR, Vidal A, Lévesque S, Yamazaki W, Balzan C, Vargas A, Piccirillo A, Chaban B, Hill JE, Betancor L, Collado L, Truyers I, Midwinter AC, Dagi HT, Mégraud F, Calleros L, Pérez R, Naya H, Lawley TD.

Nat Commun. 2017 Nov 8;8(1):1367. doi: 10.1038/s41467-017-01449-9.


Climate change and body size trends in aquatic and terrestrial endotherms: Does habitat matter?

Naya DE, Naya H, Cook J.

PLoS One. 2017 Aug 16;12(8):e0183051. doi: 10.1371/journal.pone.0183051. eCollection 2017.


Modelling female fertility traits in beef cattle using linear and non-linear models.

Naya H, Peñagaricano F, Urioste JI.

J Anim Breed Genet. 2017 Jun;134(3):202-212. doi: 10.1111/jbg.12266.


lncRNAs are associated with polysomes during adipose-derived stem cell differentiation.

Dallagiovanna B, Pereira IT, Origa-Alves AC, Shigunov P, Naya H, Spangenberg L.

Gene. 2017 Apr 30;610:103-111. doi: 10.1016/j.gene.2017.02.004. Epub 2017 Feb 7.


Understanding evolutionary variation in basal metabolic rate: An analysis in subterranean rodents.

Luna F, Naya H, Naya DE.

Comp Biochem Physiol A Mol Integr Physiol. 2017 Apr;206:87-94. doi: 10.1016/j.cbpa.2017.02.002. Epub 2017 Feb 4.


Genome-Wide Association Studies with a Genomic Relationship Matrix: A Case Study with Wheat and Arabidopsis.

Gianola D, Fariello MI, Naya H, Schön CC.

G3 (Bethesda). 2016 Oct 13;6(10):3241-3256. doi: 10.1534/g3.116.034256.


Transcriptome Sequencing Reveals Wide Expression Reprogramming of Basal and Unknown Genes in Leptospira biflexa Biofilms.

Iraola G, Spangenberg L, Lopes Bastos B, Graña M, Vasconcelos L, Almeida Á, Greif G, Robello C, Ristow P, Naya H.

mSphere. 2016 Apr 6;1(2). pii: e00042-16. doi: 10.1128/mSphere.00042-16. eCollection 2016 Mar-Apr.


Campylobacter geochelonis sp. nov. isolated from the western Hermann's tortoise (Testudo hermanni hermanni).

Piccirillo A, Niero G, Calleros L, Pérez R, Naya H, Iraola G.

Int J Syst Evol Microbiol. 2016 Sep;66(9):3468-3476. doi: 10.1099/ijsem.0.001219. Epub 2016 Jun 6.


3697G>A in MT-ND1 is a causative mutation in mitochondrial disease.

Spangenberg L, Graña M, Greif G, Suarez-Rivero JM, Krysztal K, Tapié A, Boidi M, Fraga V, Lemes A, Gueçaimburú R, Cerisola A, Sánchez-Alcázar JA, Robello C, Raggio V, Naya H.

Mitochondrion. 2016 May;28:54-9. doi: 10.1016/j.mito.2016.03.006. Epub 2016 Mar 24.


Genetic parameters of objectionable fibers and of their associations with fleece traits in Corriedale sheep.

Sánchez AL, Urioste JI, Peñagaricano F, Neimaur K, Sienra I, Naya H, Kremer R.

J Anim Sci. 2016 Jan;94(1):13-20. doi: 10.2527/jas.2015-9619.


Whole-Genome Sequences of Mycobacterium bovis Strain MbURU-001, Isolated from Fresh Bovine Infected Samples.

Lasserre M, Berná L, Greif G, Díaz-Viraqué F, Iraola G, Naya H, Castro-Ramos M, Juambeltz A, Robello C.

Genome Announc. 2015 Nov 5;3(6). pii: e01237-15. doi: 10.1128/genomeA.01237-15.


Brain size and thermoregulation during the evolution of the genus Homo.

Naya DE, Naya H, Lessa EP.

Comp Biochem Physiol A Mol Integr Physiol. 2016 Jan;191:66-73. doi: 10.1016/j.cbpa.2015.09.017. Epub 2015 Oct 3.


Do Molecular Markers Inform About Pleiotropy?

Gianola D, de los Campos G, Toro MA, Naya H, Schön CC, Sorensen D.

Genetics. 2015 Sep;201(1):23-9. doi: 10.1534/genetics.115.179978. Epub 2015 Jul 23.


Profiling of small RNA cargo of extracellular vesicles shed by Trypanosoma cruzi reveals a specific extracellular signature.

Fernandez-Calero T, Garcia-Silva R, Pena A, Robello C, Persson H, Rovira C, Naya H, Cayota A.

Mol Biochem Parasitol. 2015 Jan-Feb;199(1-2):19-28. doi: 10.1016/j.molbiopara.2015.03.003. Epub 2015 Mar 17.


Genomic evidence for the emergence and evolution of pathogenicity and niche preferences in the genus Campylobacter.

Iraola G, Pérez R, Naya H, Paolicchi F, Pastor E, Valenzuela S, Calleros L, Velilla A, Hernández M, Morsella C.

Genome Biol Evol. 2014 Sep 4;6(9):2392-405. doi: 10.1093/gbe/evu195.


Polysome profiling shows the identity of human adipose-derived stromal/stem cells in detail and clearly distinguishes them from dermal fibroblasts.

Zych J, Spangenberg L, Stimamiglio MA, Abud AP, Shigunov P, Marchini FK, Kuligovski C, Cofré AR, Schittini AV, Aguiar AM, Senegaglia A, Brofman PR, Goldenberg S, Dallagiovanna B, Naya H, Correa A.

Stem Cells Dev. 2014 Nov 15;23(22):2791-802. doi: 10.1089/scd.2013.0496. Epub 2014 Jul 28.


Whole-Genome Sequencing of an Isoniazid-Resistant Clinical Isolate of Mycobacterium tuberculosis Strain MtURU-002 from Uruguay.

Berná L, Iraola G, Greif G, Coitinho C, Rivas CM, Naya H, Robello C.

Genome Announc. 2014 Jul 17;2(4). pii: e00655-14. doi: 10.1128/genomeA.00655-14.


Activation of the PI3K/AKT pathway by microRNA-22 results in CLL B-cell proliferation.

Palacios F, Abreu C, Prieto D, Morande P, Ruiz S, Fernández-Calero T, Naya H, Libisch G, Robello C, Landoni AI, Gabus R, Dighiero G, Oppezzo P.

Leukemia. 2015 Jan;29(1):115-25. doi: 10.1038/leu.2014.158. Epub 2014 May 14.


Mining of public sequencing databases supports a non-dietary origin for putative foreign miRNAs: underestimated effects of contamination in NGS.

Tosar JP, Rovira C, Naya H, Cayota A.

RNA. 2014 Jun;20(6):754-7. doi: 10.1261/rna.044263.114. Epub 2014 Apr 11.


Complete Genome Sequence of Mycobacterium tuberculosis Strain MtURU-001, Isolated from a Rapidly Progressing Outbreak in Uruguay.

Greif G, Iraola G, Berná L, Coitinho C, Rivas CM, Naya H, Robello C.

Genome Announc. 2014 Jan 23;2(1). pii: e01220-13. doi: 10.1128/genomeA.01220-13.


Liver functional genomics in beef cows on grazing systems: novel genes and pathways revealed.

Laporta J, Rosa GJ, Naya H, Carriquiry M.

Physiol Genomics. 2014 Feb 15;46(4):138-47. doi: 10.1152/physiolgenomics.00120.2013. Epub 2013 Dec 10.


Extracellular vesicles shed by Trypanosoma cruzi are linked to small RNA pathways, life cycle regulation, and susceptibility to infection of mammalian cells.

Garcia-Silva MR, das Neves RF, Cabrera-Cabrera F, Sanguinetti J, Medeiros LC, Robello C, Naya H, Fernandez-Calero T, Souto-Padron T, de Souza W, Cayota A.

Parasitol Res. 2014 Jan;113(1):285-304. doi: 10.1007/s00436-013-3655-1. Epub 2013 Nov 17.


Role of alternative polyadenylation during adipogenic differentiation: an in silico approach.

Spangenberg L, Correa A, Dallagiovanna B, Naya H.

PLoS One. 2013 Oct 15;8(10):e75578. doi: 10.1371/journal.pone.0075578. eCollection 2013. Erratum in: PLoS One. 2014;9(5):e91409.


Complete Genome Sequence of Campylobacter fetus subsp. venerealis Biovar Intermedius, Isolated from the Prepuce of a Bull.

Iraola G, Pérez R, Naya H, Paolicchi F, Harris D, Lawley TD, Rego N, Hernández M, Calleros L, Carretto L, Velilla A, Morsella C, Méndez A, Gioffre A.

Genome Announc. 2013 Aug 1;1(4). pii: e00526-13. doi: 10.1128/genomeA.00526-13.


Thermal conductance and basal metabolic rate are part of a coordinated system for heat transfer regulation.

Naya DE, Spangenberg L, Naya H, Bozinovic F.

Proc Biol Sci. 2013 Jul 31;280(1767):20131629. doi: 10.1098/rspb.2013.1629. Print 2013 Sep 22.


Polysome profiling shows extensive posttranscriptional regulation during human adipocyte stem cell differentiation into adipocytes.

Spangenberg L, Shigunov P, Abud AP, Cofré AR, Stimamiglio MA, Kuligovski C, Zych J, Schittini AV, Costa AD, Rebelatto CK, Brofman PR, Goldenberg S, Correa A, Naya H, Dallagiovanna B.

Stem Cell Res. 2013 Sep;11(2):902-12. doi: 10.1016/j.scr.2013.06.002. Epub 2013 Jun 10.


How does evolutionary variation in Basal metabolic rates arise? A statistical assessment and a mechanistic model.

Naya DE, Spangenberg L, Naya H, Bozinovic F.

Evolution. 2013 May;67(5):1463-76. doi: 10.1111/evo.12042. Epub 2013 Jan 23.


Detecting signatures of selection through haplotype differentiation among hierarchically structured populations.

Fariello MI, Boitard S, Naya H, SanCristobal M, Servin B.

Genetics. 2013 Mar;193(3):929-41. doi: 10.1534/genetics.112.147231. Epub 2013 Jan 10.


Reduced set of virulence genes allows high accuracy prediction of bacterial pathogenicity in humans.

Iraola G, Vazquez G, Spangenberg L, Naya H.

PLoS One. 2012;7(8):e42144. doi: 10.1371/journal.pone.0042144. Epub 2012 Aug 6.


Translational selection on codon usage in the genus Aspergillus.

Iriarte A, Sanguinetti M, Fernández-Calero T, Naya H, Ramón A, Musto H.

Gene. 2012 Sep 10;506(1):98-105. doi: 10.1016/j.gene.2012.06.027. Epub 2012 Jun 26.


Latitudinal patterns in rodent metabolic flexibility.

Naya DE, Spangenberg L, Naya H, Bozinovic F.

Am Nat. 2012 Jun;179(6):E172-9. doi: 10.1086/665646. Epub 2012 Apr 27.


Search for an aetiological virus candidate in chronic lymphocytic leukaemia by extensive transcriptome analysis.

Rego N, Bianchi S, Moreno P, Persson H, Kvist A, Pena A, Oppezzo P, Naya H, Rovira C, Dighiero G, Pritsch O.

Br J Haematol. 2012 Jun;157(6):709-17. doi: 10.1111/j.1365-2141.2012.09116.x. Epub 2012 Apr 10.


Direct role of Bardet-Biedl syndrome proteins in transcriptional regulation.

Gascue C, Tan PL, Cardenas-Rodriguez M, Libisch G, Fernandez-Calero T, Liu YP, Astrada S, Robello C, Naya H, Katsanis N, Badano JL.

J Cell Sci. 2012 Jan 15;125(Pt 2):362-75. doi: 10.1242/jcs.089375. Epub 2012 Feb 2.


Gene expression analysis identifies new candidate genes associated with the development of black skin spots in Corriedale sheep.

Peñagaricano F, Zorrilla P, Naya H, Robello C, Urioste JI.

J Appl Genet. 2012 Feb;53(1):99-106. doi: 10.1007/s13353-011-0066-9. Epub 2011 Sep 28.


Identifying associations between amino acid changes and meta information in alignments.

Spangenberg L, Battke F, Graña M, Nieselt K, Naya H.

Bioinformatics. 2011 Oct 15;27(20):2782-9. doi: 10.1093/bioinformatics/btr476. Epub 2011 Aug 16.


Comparative genomic analysis of dinucleotide repeats in Tritryps.

Duhagon MA, Smircich P, Forteza D, Naya H, Williams N, Garat B.

Gene. 2011 Nov 1;487(1):29-37. doi: 10.1016/j.gene.2011.07.022. Epub 2011 Jul 28.


Assessment of Poisson, probit and linear models for genetic analysis of presence and number of black spots in Corriedale sheep.

Peñagaricano F, Urioste JI, Naya H, de los Campos G, Gianola D.

J Anim Breed Genet. 2011 Apr;128(2):105-13. doi: 10.1111/j.1439-0388.2010.00893.x. Epub 2010 Dec 22.


Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene.

Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C.

Cancer Res. 2011 Jan 1;71(1):78-86. doi: 10.1158/0008-5472.CAN-10-1869.


Immunoglobulin heavy chain V-D-J gene rearrangement and mutational status in Uruguayan patients with chronic lymphocytic leukemia.

Bianchi S, Moreno P, Landoni AI, Naya H, Oppezzo P, Dighiero G, Gabús R, Pritsch O.

Leuk Lymphoma. 2010 Nov;51(11):2070-8. doi: 10.3109/10428194.2010.522283. Epub 2010 Oct 7.


Identification of relations between risk factors and their pathologies or health conditions by mining scientific literature.

Hamon T, Graña M, Raggio V, Grabar N, Naya H.

Stud Health Technol Inform. 2010;160(Pt 2):964-8.


L2-Boosting algorithm applied to high-dimensional problems in genomic selection.

González-Recio O, Weigel KA, Gianola D, Naya H, Rosa GJ.

Genet Res (Camb). 2010 Jun;92(3):227-37. doi: 10.1017/S0016672310000261.


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