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Items: 31

1.

Machine learning approaches to improve three basic plant phenotyping tasks using 3D point clouds.

Ziamtsov I, Navlakha S.

Plant Physiol. 2019 Oct 7. pii: pp.00524.2019. doi: 10.1104/pp.19.00524. [Epub ahead of print]

2.

Network trade-offs and homeostasis in Arabidopsis shoot architectures.

Conn A, Chandrasekhar A, Rongen MV, Leyser O, Chory J, Navlakha S.

PLoS Comput Biol. 2019 Sep 11;15(9):e1007325. doi: 10.1371/journal.pcbi.1007325. eCollection 2019 Sep.

3.

Adjustment in tumbling rates improves bacterial chemotaxis on obstacle-laden terrains.

Rashid S, Long Z, Singh S, Kohram M, Vashistha H, Navlakha S, Salman H, Oltvai ZN, Bar-Joseph Z.

Proc Natl Acad Sci U S A. 2019 Jun 11;116(24):11770-11775. doi: 10.1073/pnas.1816315116. Epub 2019 May 24.

PMID:
31127043
4.

Travel in city road networks follows similar transport trade-off principles to neural and plant arbors.

Suen JY, Navlakha S.

J R Soc Interface. 2019 May 31;16(154):20190041. doi: 10.1098/rsif.2019.0041.

PMID:
31088262
5.

Neural arbors are Pareto optimal.

Chandrasekhar A, Navlakha S.

Proc Biol Sci. 2019 May 15;286(1902):20182727. doi: 10.1098/rspb.2018.2727.

PMID:
31039719
6.

Predicting age from the transcriptome of human dermal fibroblasts.

Fleischer JG, Schulte R, Tsai HH, Tyagi S, Ibarra A, Shokhirev MN, Huang L, Hetzer MW, Navlakha S.

Genome Biol. 2018 Dec 20;19(1):221. doi: 10.1186/s13059-018-1599-6.

7.

A neural data structure for novelty detection.

Dasgupta S, Sheehan TC, Stevens CF, Navlakha S.

Proc Natl Acad Sci U S A. 2018 Dec 18;115(51):13093-13098. doi: 10.1073/pnas.1814448115. Epub 2018 Dec 3.

8.

A distributed algorithm to maintain and repair the trail networks of arboreal ants.

Chandrasekhar A, Gordon DM, Navlakha S.

Sci Rep. 2018 Jun 18;8(1):9297. doi: 10.1038/s41598-018-27160-3.

9.

Evidence of Rentian Scaling of Functional Modules in Diverse Biological Networks.

How JJ, Navlakha S.

Neural Comput. 2018 Aug;30(8):2210-2244. doi: 10.1162/neco_a_01095. Epub 2018 Jun 12.

PMID:
29894651
10.

TrpM8-mediated somatosensation in mouse neocortex.

Beukema P, Cecil KL, Peterson E, Mann VR, Matsushita M, Takashima Y, Navlakha S, Barth AL.

J Comp Neurol. 2018 Jun 15;526(9):1444-1456. doi: 10.1002/cne.24418. Epub 2018 Mar 25.

11.

A neural algorithm for a fundamental computing problem.

Dasgupta S, Stevens CF, Navlakha S.

Science. 2017 Nov 10;358(6364):793-796. doi: 10.1126/science.aam9868.

PMID:
29123069
12.

Network Design and the Brain.

Navlakha S, Bar-Joseph Z, Barth AL.

Trends Cogn Sci. 2018 Jan;22(1):64-78. doi: 10.1016/j.tics.2017.09.012. Epub 2017 Oct 17. Review.

PMID:
29054336
13.

High-Resolution Laser Scanning Reveals Plant Architectures that Reflect Universal Network Design Principles.

Conn A, Pedmale UV, Chory J, Navlakha S.

Cell Syst. 2017 Jul 26;5(1):53-62.e3. doi: 10.1016/j.cels.2017.06.017.

14.

A Statistical Description of Plant Shoot Architecture.

Conn A, Pedmale UV, Chory J, Stevens CF, Navlakha S.

Curr Biol. 2017 Jul 24;27(14):2078-2088.e3. doi: 10.1016/j.cub.2017.06.009. Epub 2017 Jul 6.

15.

Using Inspiration from Synaptic Plasticity Rules to Optimize Traffic Flow in Distributed Engineered Networks.

Suen JY, Navlakha S.

Neural Comput. 2017 May;29(5):1204-1228. doi: 10.1162/NECO_a_00945. Epub 2017 Feb 9.

PMID:
28181878
16.

Learning the Structural Vocabulary of a Network.

Navlakha S.

Neural Comput. 2017 Feb;29(2):287-312. doi: 10.1162/NECO_a_00924. Epub 2016 Dec 28.

PMID:
28030777
17.

Unbiased, High-Throughput Electron Microscopy Analysis of Experience-Dependent Synaptic Changes in the Neocortex.

Chandrasekaran S, Navlakha S, Audette NJ, McCreary DD, Suhan J, Bar-Joseph Z, Barth AL.

J Neurosci. 2015 Dec 16;35(50):16450-62. doi: 10.1523/JNEUROSCI.1573-15.2015.

18.

Decreasing-Rate Pruning Optimizes the Construction of Efficient and Robust Distributed Networks.

Navlakha S, Barth AL, Bar-Joseph Z.

PLoS Comput Biol. 2015 Jul 28;11(7):e1004347. doi: 10.1371/journal.pcbi.1004347. eCollection 2015 Jul.

19.

Topological properties of robust biological and computational networks.

Navlakha S, He X, Faloutsos C, Bar-Joseph Z.

J R Soc Interface. 2014 Apr 30;11(96):20140283. doi: 10.1098/rsif.2014.0283. Print 2014 Jul 6.

20.

Unsupervised segmentation of noisy electron microscopy images using salient watersheds and region merging.

Navlakha S, Ahammad P, Myers EW.

BMC Bioinformatics. 2013 Oct 4;14:294. doi: 10.1186/1471-2105-14-294.

21.

A high-throughput framework to detect synapses in electron microscopy images.

Navlakha S, Suhan J, Barth AL, Bar-Joseph Z.

Bioinformatics. 2013 Jul 1;29(13):i9-17. doi: 10.1093/bioinformatics/btt222.

22.

Parsimonious reconstruction of network evolution.

Patro R, Sefer E, Malin J, Marçais G, Navlakha S, Kingsford C.

Algorithms Mol Biol. 2012 Sep 19;7(1):25. doi: 10.1186/1748-7188-7-25.

23.

A network-based approach for predicting missing pathway interactions.

Navlakha S, Gitter A, Bar-Joseph Z.

PLoS Comput Biol. 2012;8(8):e1002640. doi: 10.1371/journal.pcbi.1002640. Epub 2012 Aug 16.

24.

Algorithms in nature: the convergence of systems biology and computational thinking.

Navlakha S, Bar-Joseph Z.

Mol Syst Biol. 2011 Nov 8;7:546. doi: 10.1038/msb.2011.78. Review.

25.

Network archaeology: uncovering ancient networks from present-day interactions.

Navlakha S, Kingsford C.

PLoS Comput Biol. 2011 Apr;7(4):e1001119. doi: 10.1371/journal.pcbi.1001119. Epub 2011 Apr 14.

26.

Finding biologically accurate clusterings in hierarchical tree decompositions using the variation of information.

Navlakha S, White J, Nagarajan N, Pop M, Kingsford C.

J Comput Biol. 2010 Mar;17(3):503-16. doi: 10.1089/cmb.2009.0173.

PMID:
20377460
27.

Alignment and clustering of phylogenetic markers--implications for microbial diversity studies.

White JR, Navlakha S, Nagarajan N, Ghodsi MR, Kingsford C, Pop M.

BMC Bioinformatics. 2010 Mar 24;11:152. doi: 10.1186/1471-2105-11-152.

28.

The power of protein interaction networks for associating genes with diseases.

Navlakha S, Kingsford C.

Bioinformatics. 2010 Apr 15;26(8):1057-63. doi: 10.1093/bioinformatics/btq076. Epub 2010 Feb 24.

29.

Exploring biological network dynamics with ensembles of graph partitions.

Navlakha S, Kingsford C.

Pac Symp Biocomput. 2010:166-77.

30.

Revealing biological modules via graph summarization.

Navlakha S, Schatz MC, Kingsford C.

J Comput Biol. 2009 Feb;16(2):253-64. doi: 10.1089/cmb.2008.11TT.

PMID:
19183002
31.

Acceptability of Praneem polyherbal vaginal tablet among HIV uninfected women & their male partners in Pune, India--Phase I study.

Joglekar NS, Joshi SN, Navlakha SN, Katti UR, Mehendale SM.

Indian J Med Res. 2006 Apr;123(4):547-52.

PMID:
16783046

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