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Items: 33

1.

High-resolution structure prediction of β-barrel membrane proteins.

Tian W, Lin M, Tang K, Liang J, Naveed H.

Proc Natl Acad Sci U S A. 2018 Feb 13;115(7):1511-1516. doi: 10.1073/pnas.1716817115. Epub 2018 Jan 29.

PMID:
29378944
2.

Diagnostic accuracy of touch imprint cytology for head and neck malignancies: a useful intra-operative tool in resource limited countries.

Naveed H, Abid M, Hashmi AA, Edhi MM, Sheikh AK, Mudassir G, Khan A.

BMC Clin Pathol. 2017 Nov 25;17:25. doi: 10.1186/s12907-017-0063-y. eCollection 2017.

3.

Efficient computation of transfer free energies of amino acids in beta-barrel membrane proteins.

Tian W, Lin M, Naveed H, Liang J.

Bioinformatics. 2017 Jun 1;33(11):1664-1671. doi: 10.1093/bioinformatics/btx053.

4.

The effect of systemic inflammation on human brain barrier function.

Elwood E, Lim Z, Naveed H, Galea I.

Brain Behav Immun. 2017 May;62:35-40. doi: 10.1016/j.bbi.2016.10.020. Epub 2016 Nov 1.

5.

A novel missense mutation in the NADPH binding domain of CYBB abolishes the NADPH oxidase activity in a male patient with increased susceptibility to infections.

Khan TA, Kalsoom K, Iqbal A, Asif H, Rahman H, Farooq SO, Naveed H, Nasir U, Amin MU, Hussain M, Tipu HN, Florea A.

Microb Pathog. 2016 Nov;100:163-169. doi: 10.1016/j.micpath.2016.09.020. Epub 2016 Sep 23.

PMID:
27666509
6.

ModuleAlign: module-based global alignment of protein-protein interaction networks.

Hashemifar S, Ma J, Naveed H, Canzar S, Xu J.

Bioinformatics. 2016 Sep 1;32(17):i658-i664. doi: 10.1093/bioinformatics/btw447.

PMID:
27587686
7.

Lymphopenia in treatment-naive relapsing multiple sclerosis.

Lim ZW, Elwood E, Naveed H, Galea I.

Neurol Neuroimmunol Neuroinflamm. 2016 Aug 12;3(5):e275. doi: 10.1212/NXI.0000000000000275. eCollection 2016 Oct. No abstract available.

8.

Outer Membrane Protein Folding and Topology from a Computational Transfer Free Energy Scale.

Lin M, Gessmann D, Naveed H, Liang J.

J Am Chem Soc. 2016 Mar 2;138(8):2592-601. doi: 10.1021/jacs.5b10307. Epub 2016 Feb 19.

9.

Proposed three-dimensional model of the orbit and relevance to orbital fracture repair.

Fitzhugh A, Naveed H, Davagnanam I, Messiha A.

Surg Radiol Anat. 2016 Jul;38(5):557-61. doi: 10.1007/s00276-015-1561-1. Epub 2015 Nov 25.

PMID:
26607148
10.

An integrated structure- and system-based framework to identify new targets of metabolites and known drugs.

Naveed H, Hameed US, Harrus D, Bourguet W, Arold ST, Gao X.

Bioinformatics. 2015 Dec 15;31(24):3922-9. doi: 10.1093/bioinformatics/btv477. Epub 2015 Aug 18.

11.

Finding optimal interaction interface alignments between biological complexes.

Cui X, Naveed H, Gao X.

Bioinformatics. 2015 Jun 15;31(12):i133-41. doi: 10.1093/bioinformatics/btv242.

12.

Radiological Comparison of the Lacrimal Sac Fossa Anatomy Between Black Africans and Caucasians.

Gore SK, Naveed H, Hamilton J, Rene C, Rose GE, Davagnanam I.

Ophthalmic Plast Reconstr Surg. 2015 Jul-Aug;31(4):328-31. doi: 10.1097/IOP.0000000000000457.

PMID:
26039331
13.

Mechanical model of geometric cell and topological algorithm for cell dynamics from single-cell to formation of monolayered tissues with pattern.

Kachalo S, Naveed H, Cao Y, Zhao J, Liang J.

PLoS One. 2015 May 14;10(5):e0126484. doi: 10.1371/journal.pone.0126484. eCollection 2015.

14.

Effects of mechanical properties on tumor invasion: insights from a cellular model.

Yingzi Li, Naveed H, Jie Liang, Xu LX.

Conf Proc IEEE Eng Med Biol Soc. 2014;2014:6818-21. doi: 10.1109/EMBC.2014.6945194.

15.

Multiscale Modeling of Cellular Epigenetic States: Stochasticity in Molecular Networks, Chromatin Folding in Cell Nuclei, and Tissue Pattern Formation of Cells.

Liang J, Cao Y, Gursoy G, Naveed H, Terebus A, Zhao J.

Crit Rev Biomed Eng. 2015;43(4):323-46. doi: 10.1615/CritRevBiomedEng.2016016559.

16.

Mechanisms of regulating tissue elongation in Drosophila wing: impact of oriented cell divisions, oriented mechanical forces, and reduced cell size.

Li Y, Naveed H, Kachalo S, Xu LX, Liang J.

PLoS One. 2014 Feb 4;9(2):e86725. doi: 10.1371/journal.pone.0086725. eCollection 2014.

17.

Modeling spatial population dynamics of stem cell lineage in wound healing and cancerogenesis.

Cao Y, Naveed H, Liang C, Liang J.

Conf Proc IEEE Eng Med Biol Soc. 2013;2013:5550-3. doi: 10.1109/EMBC.2013.6610807.

18.

Dynamic mechanical finite element model of biological cells for studying cellular pattern formation.

Zhao J, Naveed H, Kachalo S, Cao Y, Tian W, Liang J.

Conf Proc IEEE Eng Med Biol Soc. 2013;2013:4517-20. doi: 10.1109/EMBC.2013.6610551.

19.

CoCiter: an efficient tool to infer gene function by assessing the significance of literature co-citation.

Qiao N, Huang Y, Naveed H, Green CD, Han JD.

PLoS One. 2013 Sep 23;8(9):e74074. doi: 10.1371/journal.pone.0074074. eCollection 2013.

20.
21.

Modeling spatial population dynamics of stem cell lineage in tissue growth.

Cao Y, Liang C, Naveed H, Li Y, Chen M, Nie Q.

Conf Proc IEEE Eng Med Biol Soc. 2012;2012:5502-5. doi: 10.1109/EMBC.2012.6347240.

22.

Supraorbital notch and foramen: positional variation and relevance to direct brow lift.

Barker L, Naveed H, Adds PJ, Uddin JM.

Ophthalmic Plast Reconstr Surg. 2013 Jan-Feb;29(1):67-70. doi: 10.1097/IOP.0b013e318279fe41.

PMID:
23299811
23.

Lessons from the past: cribra orbitalia, an orbital roof pathology.

Naveed H, Abed SF, Davagnanam I, Uddin JM, Adds PJ.

Orbit. 2012 Dec;31(6):394-9. doi: 10.3109/01676830.2012.723785.

PMID:
23231063
24.

Mechanisms of regulating cell topology in proliferating epithelia: impact of division plane, mechanical forces, and cell memory.

Li Y, Naveed H, Kachalo S, Xu LX, Liang J.

PLoS One. 2012;7(8):e43108. doi: 10.1371/journal.pone.0043108. Epub 2012 Aug 17.

25.

Engineered oligomerization state of OmpF protein through computational design decouples oligomer dissociation from unfolding.

Naveed H, Jimenez-Morales D, Tian J, Pasupuleti V, Kenney LJ, Liang J.

J Mol Biol. 2012 May 25;419(1-2):89-101. doi: 10.1016/j.jmb.2012.02.043. Epub 2012 Mar 3.

26.

Mechanical forces mediate localized topological change in epithelia.

Li Y, Naveed H, Kachalo S, Xu LX, Liang J.

Conf Proc IEEE Eng Med Biol Soc. 2011;2011:178-81. doi: 10.1109/IEMBS.2011.6089923.

27.

Predicting three-dimensional structures of transmembrane domains of β-barrel membrane proteins.

Naveed H, Xu Y, Jackups R Jr, Liang J.

J Am Chem Soc. 2012 Jan 25;134(3):1775-81. doi: 10.1021/ja209895m. Epub 2012 Jan 12.

28.

Structure-based analysis of VDAC1 protein: defining oligomer contact sites.

Geula S, Naveed H, Liang J, Shoshan-Barmatz V.

J Biol Chem. 2012 Jan 13;287(3):2179-90. doi: 10.1074/jbc.M111.268920. Epub 2011 Nov 23.

29.

Computational studies of membrane proteins: models and predictions for biological understanding.

Liang J, Naveed H, Jimenez-Morales D, Adamian L, Lin M.

Biochim Biophys Acta. 2012 Apr;1818(4):927-41. doi: 10.1016/j.bbamem.2011.09.026. Epub 2011 Oct 12. Review.

30.

Improving the resistance of a eukaryotic β-barrel protein to thermal and chemical perturbations.

Gessmann D, Mager F, Naveed H, Arnold T, Weirich S, Linke D, Liang J, Nussberger S.

J Mol Biol. 2011 Oct 14;413(1):150-61. doi: 10.1016/j.jmb.2011.07.054. Epub 2011 Jul 29.

31.

Lipid-binding surfaces of membrane proteins: evidence from evolutionary and structural analysis.

Adamian L, Naveed H, Liang J.

Biochim Biophys Acta. 2011 Apr;1808(4):1092-102. doi: 10.1016/j.bbamem.2010.12.008. Epub 2010 Dec 16.

32.

Geometric order in proliferating epithelia: impact of rearrangements and cleavage plane orientation.

Naveed H, Li Y, Kachalo S, Liang J.

Conf Proc IEEE Eng Med Biol Soc. 2010;2010:3808-11. doi: 10.1109/IEMBS.2010.5627601.

33.

Predicting weakly stable regions, oligomerization state, and protein-protein interfaces in transmembrane domains of outer membrane proteins.

Naveed H, Jackups R Jr, Liang J.

Proc Natl Acad Sci U S A. 2009 Aug 4;106(31):12735-40. doi: 10.1073/pnas.0902169106. Epub 2009 Jul 21.

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