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Items: 1 to 50 of 76

1.

Development of a multi-locus typing scheme for an Enterobacteriaceae linear plasmid that mediates inter-species transfer of flagella.

Robertson J, Lin J, Wren-Hedgus A, Arya G, Carrillo C, Nash JHE.

PLoS One. 2019 Nov 18;14(11):e0218638. doi: 10.1371/journal.pone.0218638. eCollection 2019.

2.

Targeting discriminatory SNPs in Salmonella enterica serovar Heidelberg genomes using RNase H2-dependent PCR.

Labbé G, Rankin MA, Robertson J, Moffat J, Giang E, Lee LK, Ziebell K, MacKinnon J, Laing CR, Parmley EJ, Agunos A, Daignault D, Bekal S, Chui L, MacDonald KA, Hoang L, Slavic D, Ramsay D, Pollari F, Nash JHE, Johnson RP.

J Microbiol Methods. 2019 Feb;157:81-87. doi: 10.1016/j.mimet.2018.12.021. Epub 2018 Dec 25.

3.

Draft Genome Assembly of a Potentially Zoonotic Cryptosporidium parvum Isolate, UKP1.

Nash JHE, Robertson J, Elwin K, Chalmers RA, Kropinski AM, Guy RA.

Microbiol Resour Announc. 2018 Nov 15;7(19). pii: e01291-18. doi: 10.1128/MRA.01291-18. eCollection 2018 Nov.

4.

Complete Genome and Plasmid Sequences of 32 Salmonella enterica Strains from 30 Serovars.

Bessonov K, Robertson JA, Lin JT, Liu K, Gurnik S, Kernaghan SA, Yoshida C, Nash JHE.

Microbiol Resour Announc. 2018 Nov 1;7(17). pii: e01232-18. doi: 10.1128/MRA.01232-18. eCollection 2018 Nov.

5.

An improved DNA array-based classification method for the identification of Salmonella serotypes shows high concordance between traditional and genotypic testing.

Robertson J, Yoshida C, Gurnik S, McGrogan M, Davis K, Arya G, Murphy SA, Nichani A, Nash JHE.

PLoS One. 2018 Dec 4;13(12):e0207550. doi: 10.1371/journal.pone.0207550. eCollection 2018.

6.

MOB-suite: software tools for clustering, reconstruction and typing of plasmids from draft assemblies.

Robertson J, Nash JHE.

Microb Genom. 2018 Aug;4(8). doi: 10.1099/mgen.0.000206. Epub 2018 Jul 27.

7.

The Sequence of Two Bacteriophages with Hypermodified Bases Reveals Novel Phage-Host Interactions.

Kropinski AM, Turner D, Nash JHE, Ackermann HW, Lingohr EJ, Warren RA, Ehrlich KC, Ehrlich M.

Viruses. 2018 Apr 24;10(5). pii: E217. doi: 10.3390/v10050217.

8.

Correction for Robertson et al., "Completed Genome Sequences of Strains from 36 Serotypes of Salmonella".

Robertson J, Yoshida C, Gurnik S, Rankin M, Nash JHE.

Genome Announc. 2018 Apr 19;6(16). pii: e00333-18. doi: 10.1128/genomeA.00333-18. No abstract available.

9.

Completed Genome Sequences of Strains from 36 Serotypes of Salmonella.

Robertson J, Yoshida C, Gurnik S, Nash JHE.

Genome Announc. 2018 Jan 18;6(3). pii: e01472-17. doi: 10.1128/genomeA.01472-17. Erratum in: Genome Announc. 2018 Apr 19;6(16):.

10.

Comprehensive assessment of the quality of Salmonella whole genome sequence data available in public sequence databases using the Salmonella in silico Typing Resource (SISTR).

Robertson J, Yoshida C, Kruczkiewicz P, Nadon C, Nichani A, Taboada EN, Nash JHE.

Microb Genom. 2018 Feb;4(2). doi: 10.1099/mgen.0.000151. Epub 2018 Jan 17.

11.

The Validation and Implications of Using Whole Genome Sequencing as a Replacement for Traditional Serotyping for a National Salmonella Reference Laboratory.

Yachison CA, Yoshida C, Robertson J, Nash JHE, Kruczkiewicz P, Taboada EN, Walker M, Reimer A, Christianson S, Nichani A; PulseNet Canada Steering Committee, Nadon C.

Front Microbiol. 2017 Jun 9;8:1044. doi: 10.3389/fmicb.2017.01044. eCollection 2017.

12.

Complete Genome Sequences of 17 Canadian Isolates of Salmonella enterica subsp. enterica Serovar Heidelberg from Human, Animal, and Food Sources.

Labbé G, Ziebell K, Bekal S, Macdonald KA, Parmley EJ, Agunos A, Desruisseau A, Daignault D, Slavic D, Hoang L, Ramsay D, Pollari F, Robertson J, Nash JH, Johnson RP.

Genome Announc. 2016 Sep 15;4(5). pii: e00990-16. doi: 10.1128/genomeA.00990-16.

13.

Evaluation of Molecular Methods for Identification of Salmonella Serovars.

Yoshida C, Gurnik S, Ahmad A, Blimkie T, Murphy SA, Kropinski AM, Nash JH.

J Clin Microbiol. 2016 Aug;54(8):1992-8. doi: 10.1128/JCM.00262-16. Epub 2016 May 18.

14.

Dissemination of the mcr-1 colistin resistance gene.

Mulvey MR, Mataseje LF, Robertson J, Nash JH, Boerlin P, Toye B, Irwin R, Melano RG.

Lancet Infect Dis. 2016 Mar;16(3):289-90. doi: 10.1016/S1473-3099(16)00067-0. No abstract available.

PMID:
26973304
15.

Draft Whole-Genome Sequences of 25 Salmonella enterica Strains Representing 24 Serovars.

Yoshida C, Brumwell SL, Lingohr EJ, Ahmad A, Blimkie TM, Kogan BA, Pilsworth J, Rehman MA, Schleicher KL, Shanmugaraj J, Kropinski AM, Nash JH.

Genome Announc. 2016 Mar 3;4(2). pii: e01718-15. doi: 10.1128/genomeA.01718-15.

16.

The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies.

Yoshida CE, Kruczkiewicz P, Laing CR, Lingohr EJ, Gannon VP, Nash JH, Taboada EN.

PLoS One. 2016 Jan 22;11(1):e0147101. doi: 10.1371/journal.pone.0147101. eCollection 2016.

17.

Complete Genome and Plasmid Sequences of Three Canadian Isolates of Salmonella enterica subsp. enterica Serovar Heidelberg from Human and Food Sources.

Labbé G, Edirmanasinghe R, Ziebell K, Nash JH, Bekal S, Parmley EJ, Mulvey MR, Johnson RP.

Genome Announc. 2016 Jan 14;4(1). pii: e01526-15. doi: 10.1128/genomeA.01526-15.

18.

Complete Genome and Plasmid Sequences of Three Canadian Strains of Salmonella enterica subsp. enterica Serovar Enteritidis Belonging to Phage Types 8, 13, and 13a.

Rehman MA, Labbé G, Ziebell K, Johnson RP, Nash JH.

Genome Announc. 2015 Sep 24;3(5). pii: e01017-15. doi: 10.1128/genomeA.01017-15.

19.

Taxonomic reassessment of N4-like viruses using comparative genomics and proteomics suggests a new subfamily - "Enquartavirinae".

Wittmann J, Klumpp J, Moreno Switt AI, Yagubi A, Ackermann HW, Wiedmann M, Svircev A, Nash JH, Kropinski AM.

Arch Virol. 2015 Dec;160(12):3053-62. doi: 10.1007/s00705-015-2609-6. Epub 2015 Sep 23.

PMID:
26395091
20.

Draft Whole-Genome Sequence of Morganella morganii Serotype O:1ab.

Nash JH, Young NM.

Genome Announc. 2015 May 21;3(3). pii: e00453-15. doi: 10.1128/genomeA.00453-15.

21.

A proposed new bacteriophage subfamily: "Jerseyvirinae".

Anany H, Switt AI, De Lappe N, Ackermann HW, Reynolds DM, Kropinski AM, Wiedmann M, Griffiths MW, Tremblay D, Moineau S, Nash JH, Turner D.

Arch Virol. 2015 Apr;160(4):1021-33. doi: 10.1007/s00705-015-2344-z. Epub 2015 Feb 8.

PMID:
25663216
22.

The structure of the Morganella morganii lipopolysaccharide core region and identification of its genomic loci.

Vinogradov E, Nash JH, Foote S, Young NM.

Carbohydr Res. 2015 Jan 30;402:232-5. doi: 10.1016/j.carres.2014.10.032. Epub 2014 Nov 13.

PMID:
25498024
23.

Integration of genomic and proteomic analyses in the classification of the Siphoviridae family.

Adriaenssens EM, Edwards R, Nash JHE, Mahadevan P, Seto D, Ackermann HW, Lavigne R, Kropinski AM.

Virology. 2015 Mar;477:144-154. doi: 10.1016/j.virol.2014.10.016. Epub 2014 Nov 14.

24.

Correction for Rehman et al., High-Quality Draft Whole-Genome Sequences of 162 Salmonella enterica subsp. enterica Serovar Enteritidis Strains Isolated from Diverse Sources in Canada.

Rehman MA, Ziebell K, Nash JH, Kropinski AM, Zong Z, Nafziger E, Boerlin P, Chui L, Devenish J, Bekal S, Graham M, Johnson RP.

Genome Announc. 2014 Sep 18;2(5). pii: e01008-14. doi: 10.1128/genomeA.01008-14. No abstract available.

25.

Supersize me: Cronobacter sakazakii phage GAP32.

Abbasifar R, Griffiths MW, Sabour PM, Ackermann HW, Vandersteegen K, Lavigne R, Noben JP, Alanis Villa A, Abbasifar A, Nash JH, Kropinski AM.

Virology. 2014 Jul;460-461:138-46. doi: 10.1016/j.virol.2014.05.003. Epub 2014 Jun 2.

26.

Four Escherichia coli O157:H7 phages: a new bacteriophage genus and taxonomic classification of T1-like phages.

Niu YD, McAllister TA, Nash JH, Kropinski AM, Stanford K.

PLoS One. 2014 Jun 25;9(6):e100426. doi: 10.1371/journal.pone.0100426. eCollection 2014.

27.

High-Quality Draft Whole-Genome Sequences of 162 Salmonella enterica subsp. enterica Serovar Enteritidis Strains Isolated from Diverse Sources in Canada.

Rehman MA, Ziebell K, Nash JH, Kropinski AM, Zong Z, Nafziger E, Boerlin P, Chui L, Devenish J, Bekal S, Graham M, Johnson RP.

Genome Announc. 2014 May 1;2(2). pii: e00348-14. doi: 10.1128/genomeA.00348-14. Erratum in: Genome Announc. 2014 Sep 18;2(5):.

28.

Complete Genome Sequences of 16 Canadian Strains of Salmonella enterica subsp. enterica Serovar Enteritidis.

Rehman MA, Ziebell K, Nash JH, Kropinski AM, Ross A, Al-Lami M, Boerlin P, Chui L, Devenish J, Bekal S, Graham M, Amoako KK, Johnson RP.

Genome Announc. 2014 Apr 24;2(2). pii: e00330-14. doi: 10.1128/genomeA.00330-14.

29.

Romulus and Remus, two phage isolates representing a distinct clade within the Twortlikevirus genus, display suitable properties for phage therapy applications.

Vandersteegen K, Kropinski AM, Nash JH, Noben JP, Hermans K, Lavigne R.

J Virol. 2013 Mar;87(6):3237-47. doi: 10.1128/JVI.02763-12. Epub 2013 Jan 9.

30.

Complete genome sequence of Actinobacillus suis H91-0380, a virulent serotype O2 strain.

MacInnes JI, Mackinnon J, Bujold AR, Ziebell K, Kropinski AM, Nash JH.

J Bacteriol. 2012 Dec;194(23):6686-7. doi: 10.1128/JB.01633-12.

31.

Development and validation of a comparative genomic fingerprinting method for high-resolution genotyping of Campylobacter jejuni.

Taboada EN, Ross SL, Mutschall SK, Mackinnon JM, Roberts MJ, Buchanan CJ, Kruczkiewicz P, Jokinen CC, Thomas JE, Nash JH, Gannon VP, Marshall B, Pollari F, Clark CG.

J Clin Microbiol. 2012 Mar;50(3):788-97. doi: 10.1128/JCM.00669-11. Epub 2011 Dec 14.

32.

Genome sequence of adherent-invasive Escherichia coli and comparative genomic analysis with other E. coli pathotypes.

Nash JH, Villegas A, Kropinski AM, Aguilar-Valenzuela R, Konczy P, Mascarenhas M, Ziebell K, Torres AG, Karmali MA, Coombes BK.

BMC Genomics. 2010 Nov 25;11:667. doi: 10.1186/1471-2164-11-667.

33.

Regulation of pga operon expression and biofilm formation in Actinobacillus pleuropneumoniae by sigmaE and H-NS.

Bossé JT, Sinha S, Li MS, O'Dwyer CA, Nash JH, Rycroft AN, Kroll JS, Langford PR.

J Bacteriol. 2010 May;192(9):2414-23. doi: 10.1128/JB.01513-09. Epub 2010 Mar 5.

34.

Transcriptional profiling of Actinobacillus pleuropneumoniae during the acute phase of a natural infection in pigs.

Deslandes V, Denicourt M, Girard C, Harel J, Nash JH, Jacques M.

BMC Genomics. 2010 Feb 8;11:98. doi: 10.1186/1471-2164-11-98.

35.

malT knockout mutation invokes a stringent type gene-expression profile in Actinobacillus pleuropneumoniae in bronchoalveolar fluid.

Lone AG, Deslandes V, Nash JH, Jacques M, MacInnes JI.

BMC Microbiol. 2009 Sep 14;9:195. doi: 10.1186/1471-2180-9-195.

36.

Effects of growth conditions on biofilm formation by Actinobacillus pleuropneumoniae.

Labrie J, Pelletier-Jacques G, Deslandes V, Ramjeet M, Auger E, Nash JH, Jacques M.

Vet Res. 2010 Jan-Feb;41(1):3. doi: 10.1051/vetres/2009051. Epub 2009 Sep 10.

37.

Modulation of gene expression in Actinobacillus pleuropneumoniae exposed to bronchoalveolar fluid.

Lone AG, Deslandes V, Nash JH, Jacques M, Macinnes JI.

PLoS One. 2009 Jul 3;4(7):e6139. doi: 10.1371/journal.pone.0006139.

38.

Analysis of the Actinobacillus pleuropneumoniae HlyX (FNR) regulon and identification of iron-regulated protein B as an essential virulence factor.

Buettner FF, Bendalla IM, Bossé JT, Meens J, Nash JH, Härtig E, Langford PR, Gerlach GF.

Proteomics. 2009 May;9(9):2383-98. doi: 10.1002/pmic.200800439.

PMID:
19343711
39.

Microarray-based comparative genomic profiling of reference strains and selected Canadian field isolates of Actinobacillus pleuropneumoniae.

Gouré J, Findlay WA, Deslandes V, Bouevitch A, Foote SJ, MacInnes JI, Coulton JW, Nash JH, Jacques M.

BMC Genomics. 2009 Feb 24;10:88. doi: 10.1186/1471-2164-10-88.

40.

Host-pathogen interactions of Actinobacillus pleuropneumoniae with porcine lung and tracheal epithelial cells.

Auger E, Deslandes V, Ramjeet M, Contreras I, Nash JH, Harel J, Gottschalk M, Olivier M, Jacques M.

Infect Immun. 2009 Apr;77(4):1426-41. doi: 10.1128/IAI.00297-08. Epub 2009 Jan 12.

41.

The genome of Aeromonas salmonicida subsp. salmonicida A449: insights into the evolution of a fish pathogen.

Reith ME, Singh RK, Curtis B, Boyd JM, Bouevitch A, Kimball J, Munholland J, Murphy C, Sarty D, Williams J, Nash JH, Johnson SC, Brown LL.

BMC Genomics. 2008 Sep 18;9:427. doi: 10.1186/1471-2164-9-427.

42.

Comparative genomic assessment of Multi-Locus Sequence Typing: rapid accumulation of genomic heterogeneity among clonal isolates of Campylobacter jejuni.

Taboada EN, Mackinnon JM, Luebbert CC, Gannon VP, Nash JH, Rahn K.

BMC Evol Biol. 2008 Aug 8;8:229. doi: 10.1186/1471-2148-8-229.

43.

PCR specific for Actinobacillus pleuropneumoniae serotype 3.

Zhou L, Jones SC, Angen Ø, Bossé JT, Nash JH, Frey J, Zhou R, Chen HC, Kroll JS, Rycroft AN, Langford PR.

Vet Rec. 2008 May 17;162(20):648-52.

PMID:
18487584
44.

Analysis of the Actinobacillus pleuropneumoniae ArcA regulon identifies fumarate reductase as a determinant of virulence.

Buettner FF, Bendallah IM, Bosse JT, Dreckmann K, Nash JH, Langford PR, Gerlach GF.

Infect Immun. 2008 Jun;76(6):2284-95. doi: 10.1128/IAI.01540-07. Epub 2008 Mar 31.

45.

Multiplex PCR that can distinguish between immunologically cross- reactive serovar 3, 6, and 8 Actinobacillus pleuropneumoniae strains.

Zhou L, Jones SC, Angen Ø, Bossé JT, Nash JH, Frey J, Zhou R, Chen HC, Kroll JS, Rycroft AN, Langford PR.

J Clin Microbiol. 2008 Feb;46(2):800-3. Epub 2007 Dec 19.

46.

The complete genome sequence of Actinobacillus pleuropneumoniae L20 (serotype 5b).

Foote SJ, Bossé JT, Bouevitch AB, Langford PR, Young NM, Nash JH.

J Bacteriol. 2008 Feb;190(4):1495-6. Epub 2007 Dec 7.

47.

Studying bacterial genome dynamics using microarray-based comparative genomic hybridization.

Taboada EN, Luebbert CC, Nash JH.

Methods Mol Biol. 2007;396:223-53.

PMID:
18025696
48.

Epidemiology, relative invasive ability, molecular characterization, and competitive performance of Campylobacter jejuni strains in the chicken gut.

Pope C, Wilson J, Taboada EN, Mackinnon J, Felipe Alves CA, Nash JH, Rahn K, Tannock GW.

Appl Environ Microbiol. 2007 Dec;73(24):7959-66. Epub 2007 Oct 5.

49.
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