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Items: 23

1.

APEX2-mediated proximity labeling resolves protein networks in Saccharomyces cerevisiae cells.

Singer-Krüger B, Fröhlich T, Franz-Wachtel M, Nalpas N, Macek B, Jansen RP.

FEBS J. 2019 Jul 19. doi: 10.1111/febs.15007. [Epub ahead of print]

PMID:
31323700
2.

β-Actin mRNA interactome mapping by proximity biotinylation.

Mukherjee J, Hermesh O, Eliscovich C, Nalpas N, Franz-Wachtel M, Maček B, Jansen RP.

Proc Natl Acad Sci U S A. 2019 Jun 25;116(26):12863-12872. doi: 10.1073/pnas.1820737116. Epub 2019 Jun 12.

PMID:
31189591
3.

Quantitative Proteomics Links the Intermediate Filament Nestin to Resistance to Targeted BRAF Inhibition in Melanoma Cells.

Schmitt M, Sinnberg T, Nalpas NC, Maass A, Schittek B, Macek B.

Mol Cell Proteomics. 2019 Jun;18(6):1096-1109. doi: 10.1074/mcp.RA119.001302. Epub 2019 Mar 19.

PMID:
30890564
4.

The bovine alveolar macrophage DNA methylome is resilient to infection with Mycobacterium bovis.

O'Doherty AM, Rue-Albrecht KC, Magee DA, Ahting S, Irwin RE, Hall TJ, Browne JA, Nalpas NC, Walsh CP, Gordon SV, Wojewodzic MW, MacHugh DE.

Sci Rep. 2019 Feb 6;9(1):1510. doi: 10.1038/s41598-018-37618-z.

5.

In-depth analysis of Bacillus subtilis proteome identifies new ORFs and traces the evolutionary history of modified proteins.

Ravikumar V, Nalpas NC, Anselm V, Krug K, Lenuzzi M, Šestak MS, Domazet-Lošo T, Mijakovic I, Macek B.

Sci Rep. 2018 Nov 22;8(1):17246. doi: 10.1038/s41598-018-35589-9.

6.

RNA Sequencing (RNA-Seq) Reveals Extremely Low Levels of Reticulocyte-Derived Globin Gene Transcripts in Peripheral Blood From Horses (Equus caballus) and Cattle (Bos taurus).

Correia CN, McLoughlin KE, Nalpas NC, Magee DA, Browne JA, Rue-Albrecht K, Gordon SV, MacHugh DE.

Front Genet. 2018 Aug 14;9:278. doi: 10.3389/fgene.2018.00278. eCollection 2018.

7.

Proteome Response of a Metabolically Flexible Anoxygenic Phototroph to Fe(II) Oxidation.

Bryce C, Franz-Wachtel M, Nalpas NC, Miot J, Benzerara K, Byrne JM, Kleindienst S, Macek B, Kappler A.

Appl Environ Microbiol. 2018 Aug 1;84(16). pii: e01166-18. doi: 10.1128/AEM.01166-18. Print 2018 Aug 15.

8.

Parallel reaction monitoring on a Q Exactive mass spectrometer increases reproducibility of phosphopeptide detection in bacterial phosphoproteomics measurements.

Taumer C, Griesbaum L, Kovacevic A, Soufi B, Nalpas NC, Macek B.

J Proteomics. 2018 Oct 30;189:60-66. doi: 10.1016/j.jprot.2018.03.028. Epub 2018 Mar 29.

PMID:
29605292
9.

Comparative 'omics analyses differentiate Mycobacterium tuberculosis and Mycobacterium bovis and reveal distinct macrophage responses to infection with the human and bovine tubercle bacilli.

Malone KM, Rue-Albrecht K, Magee DA, Conlon K, Schubert OT, Nalpas NC, Browne JA, Smyth A, Gormley E, Aebersold R, MacHugh DE, Gordon SV.

Microb Genom. 2018 Mar;4(3). doi: 10.1099/mgen.0.000163. Epub 2018 Mar 20.

10.

Circulating microRNAs as Potential Biomarkers of Infectious Disease.

Correia CN, Nalpas NC, McLoughlin KE, Browne JA, Gordon SV, MacHugh DE, Shaughnessy RG.

Front Immunol. 2017 Feb 16;8:118. doi: 10.3389/fimmu.2017.00118. eCollection 2017. Review.

11.

GOexpress: an R/Bioconductor package for the identification and visualisation of robust gene ontology signatures through supervised learning of gene expression data.

Rue-Albrecht K, McGettigan PA, Hernández B, Nalpas NC, Magee DA, Parnell AC, Gordon SV, MacHugh DE.

BMC Bioinformatics. 2016 Mar 11;17:126. doi: 10.1186/s12859-016-0971-3.

12.

RNA sequencing provides exquisite insight into the manipulation of the alveolar macrophage by tubercle bacilli.

Nalpas NC, Magee DA, Conlon KM, Browne JA, Healy C, McLoughlin KE, Rue-Albrecht K, McGettigan PA, Killick KE, Gormley E, Gordon SV, MacHugh DE.

Sci Rep. 2015 Sep 8;5:13629. doi: 10.1038/srep13629.

13.

Analysis of the Bovine Monocyte-Derived Macrophage Response to Mycobacterium avium Subspecies Paratuberculosis Infection Using RNA-seq.

Casey ME, Meade KG, Nalpas NC, Taraktsoglou M, Browne JA, Killick KE, Park SD, Gormley E, Hokamp K, Magee DA, MacHugh DE.

Front Immunol. 2015 Feb 4;6:23. doi: 10.3389/fimmu.2015.00023. eCollection 2015.

14.

MicroRNA profiling of the bovine alveolar macrophage response to Mycobacterium bovis infection suggests pathogen survival is enhanced by microRNA regulation of endocytosis and lysosome trafficking.

Vegh P, Magee DA, Nalpas NC, Bryan K, McCabe MS, Browne JA, Conlon KM, Gordon SV, Bradley DG, MacHugh DE, Lynn DJ.

Tuberculosis (Edinb). 2015 Jan;95(1):60-7.

15.

Comparative functional genomics and the bovine macrophage response to strains of the mycobacterium genus.

Rue-Albrecht K, Magee DA, Killick KE, Nalpas NC, Gordon SV, MacHugh DE.

Front Immunol. 2014 Nov 5;5:536. doi: 10.3389/fimmu.2014.00536. eCollection 2014. Review.

16.

Key Hub and Bottleneck Genes Differentiate the Macrophage Response to Virulent and Attenuated Mycobacterium bovis.

Killick KE, Magee DA, Park SD, Taraktsoglou M, Browne JA, Conlon KM, Nalpas NC, Gormley E, Gordon SV, MacHugh DE, Hokamp K.

Front Immunol. 2014 Oct 1;5:422. doi: 10.3389/fimmu.2014.00422. eCollection 2014.

17.

RNA-seq Transcriptional Profiling of Peripheral Blood Leukocytes from Cattle Infected with Mycobacterium bovis.

McLoughlin KE, Nalpas NC, Rue-Albrecht K, Browne JA, Magee DA, Killick KE, Park SD, Hokamp K, Meade KG, O'Farrelly C, Gormley E, Gordon SV, MacHugh DE.

Front Immunol. 2014 Aug 26;5:396. doi: 10.3389/fimmu.2014.00396. eCollection 2014.

18.

Innate cytokine profiling of bovine alveolar macrophages reveals commonalities and divergence in the response to Mycobacterium bovis and Mycobacterium tuberculosis infection.

Magee DA, Conlon KM, Nalpas NC, Browne JA, Pirson C, Healy C, McLoughlin KE, Chen J, Vordermeier HM, Gormley E, MacHugh DE, Gordon SV.

Tuberculosis (Edinb). 2014 Jul;94(4):441-50. doi: 10.1016/j.tube.2014.04.004. Epub 2014 May 5.

PMID:
24882682
19.

Profiling microRNA expression in bovine alveolar macrophages using RNA-seq.

Vegh P, Foroushani AB, Magee DA, McCabe MS, Browne JA, Nalpas NC, Conlon KM, Gordon SV, Bradley DG, MacHugh DE, Lynn DJ.

Vet Immunol Immunopathol. 2013 Oct 1;155(4):238-44. doi: 10.1016/j.vetimm.2013.08.004. Epub 2013 Aug 24.

PMID:
24021155
20.

Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro.

Nalpas NC, Park SD, Magee DA, Taraktsoglou M, Browne JA, Conlon KM, Rue-Albrecht K, Killick KE, Hokamp K, Lohan AJ, Loftus BJ, Gormley E, Gordon SV, MacHugh DE.

BMC Genomics. 2013 Apr 8;14:230. doi: 10.1186/1471-2164-14-230.

21.

Pan-genomic analysis of bovine monocyte-derived macrophage gene expression in response to in vitro infection with Mycobacterium avium subspecies paratuberculosis.

Machugh DE, Taraktsoglou M, Killick KE, Nalpas NC, Browne JA, DE Park S, Hokamp K, Gormley E, Magee DA.

Vet Res. 2012 Mar 28;43:25. doi: 10.1186/1297-9716-43-25.

22.

Global gene expression and systems biology analysis of bovine monocyte-derived macrophages in response to in vitro challenge with Mycobacterium bovis.

Magee DA, Taraktsoglou M, Killick KE, Nalpas NC, Browne JA, Park SD, Conlon KM, Lynn DJ, Hokamp K, Gordon SV, Gormley E, MacHugh DE.

PLoS One. 2012;7(2):e32034. doi: 10.1371/journal.pone.0032034. Epub 2012 Feb 22.

23.

Explaining patterns of infection in free-living populations using laboratory immune experiments.

Murphy L, Nalpas N, Stear M, Cattadori IM.

Parasite Immunol. 2011 May;33(5):287-302. doi: 10.1111/j.1365-3024.2011.01281.x.

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