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Items: 1 to 50 of 68

1.

Bacterial Community 16S rRNA Gene Sequencing Characterizes Riverine Microbial Impact on Lake Michigan.

Nakatsu CH, Byappanahalli MN, Nevers MB.

Front Microbiol. 2019 May 14;10:996. doi: 10.3389/fmicb.2019.00996. eCollection 2019.

2.

Investigation of carryover effect of prior fibre consumption on growth, serum and tissue metabolic markers in Ossabaw pigs fed a high-fat diet.

Almeida VV, Yan H, Nakatsu CH, Ajuwon KM.

J Anim Physiol Anim Nutr (Berl). 2018 Aug;102(4):1053-1061. doi: 10.1111/jpn.12900. Epub 2018 Apr 14.

PMID:
29654618
3.

Age, sex, and TNF associated differences in the gut microbiota of mice and their impact on acute TNBS colitis.

Kozik AJ, Nakatsu CH, Chun H, Jones-Hall YL.

Exp Mol Pathol. 2017 Dec;103(3):311-319. doi: 10.1016/j.yexmp.2017.11.014. Epub 2017 Nov 22.

PMID:
29175304
4.

Draft Genome Sequence of Pseudomonas fluorescens Strain TR3, a Potential Biocontrol Agent against the Rice Blast Fungus Magnaporthe oryzae.

Zhang X, Xu JR, Nakatsu CH.

Genome Announc. 2017 Nov 22;5(47). pii: e01332-17. doi: 10.1128/genomeA.01332-17.

5.

Microbial Ecology along the Gastrointestinal Tract.

Hillman ET, Lu H, Yao T, Nakatsu CH.

Microbes Environ. 2017 Dec 27;32(4):300-313. doi: 10.1264/jsme2.ME17017. Epub 2017 Nov 10. Review.

6.

Soluble Corn Fiber Increases Calcium Absorption Associated with Shifts in the Gut Microbiome: A Randomized Dose-Response Trial in Free-Living Pubertal Females.

Whisner CM, Martin BR, Nakatsu CH, Story JA, MacDonald-Clarke CJ, McCabe LD, McCabe GP, Weaver CM.

J Nutr. 2016 Jul;146(7):1298-306. doi: 10.3945/jn.115.227256. Epub 2016 Jun 8.

PMID:
27281813
7.

The Intersection of TNF, IBD and the Microbiome.

Jones-Hall YL, Nakatsu CH.

Gut Microbes. 2016;7(1):58-62. doi: 10.1080/19490976.2015.1121364.

8.

Effects of dietary resistant starch content on metabolic status, milk composition, and microbial profiling in lactating sows and on offspring performance.

Yan H, Lu H, Almeida VV, Ward MG, Adeola O, Nakatsu CH, Ajuwon KM.

J Anim Physiol Anim Nutr (Berl). 2017 Feb;101(1):190-200. doi: 10.1111/jpn.12440. Epub 2016 Feb 5.

PMID:
26848026
9.

Increase in Bacterial Colony Formation from a Permafrost Ice Wedge Dosed with a Tomitella biformata Recombinant Resuscitation-Promoting Factor Protein.

Puspita ID, Kitagawa W, Kamagata Y, Tanaka M, Nakatsu CH.

Microbes Environ. 2015;30(2):151-6. doi: 10.1264/jsme2.ME14119. Epub 2015 Apr 4.

10.

A hidden pitfall in the preparation of agar media undermines microorganism cultivability.

Tanaka T, Kawasaki K, Daimon S, Kitagawa W, Yamamoto K, Tamaki H, Tanaka M, Nakatsu CH, Kamagata Y.

Appl Environ Microbiol. 2014 Dec;80(24):7659-66. doi: 10.1128/AEM.02741-14. Epub 2014 Oct 3.

11.

Fecal bacterial community changes associated with isoflavone metabolites in postmenopausal women after soy bar consumption.

Nakatsu CH, Armstrong A, Clavijo AP, Martin BR, Barnes S, Weaver CM.

PLoS One. 2014 Oct 1;9(10):e108924. doi: 10.1371/journal.pone.0108924. eCollection 2014.

12.

Soluble maize fibre affects short-term calcium absorption in adolescent boys and girls: a randomised controlled trial using dual stable isotopic tracers.

Whisner CM, Martin BR, Nakatsu CH, McCabe GP, McCabe LD, Peacock M, Weaver CM.

Br J Nutr. 2014 Aug 14;112(3):446-56. doi: 10.1017/S0007114514000981. Epub 2014 May 22.

PMID:
24848974
13.

Complete genome sequence of Arthrobacter sp. strain FB24.

Nakatsu CH, Barabote R, Thompson S, Bruce D, Detter C, Brettin T, Han C, Beasley F, Chen W, Konopka A, Xie G.

Stand Genomic Sci. 2013 Sep 30;9(1):106-16. doi: 10.4056/sigs.4438185. eCollection 2013 Oct 16.

14.

Carbon dioxide concentration dictates alternative methanogenic pathways in oil reservoirs.

Mayumi D, Dolfing J, Sakata S, Maeda H, Miyagawa Y, Ikarashi M, Tamaki H, Takeuchi M, Nakatsu CH, Kamagata Y.

Nat Commun. 2013;4:1998. doi: 10.1038/ncomms2998.

15.

Dietary fat content and fiber type modulate hind gut microbial community and metabolic markers in the pig.

Yan H, Potu R, Lu H, Vezzoni de Almeida V, Stewart T, Ragland D, Armstrong A, Adeola O, Nakatsu CH, Ajuwon KM.

PLoS One. 2013;8(4):e59581. doi: 10.1371/journal.pone.0059581. Epub 2013 Apr 3.

16.

Galacto-oligosaccharides increase calcium absorption and gut bifidobacteria in young girls: a double-blind cross-over trial.

Whisner CM, Martin BR, Schoterman MH, Nakatsu CH, McCabe LD, McCabe GP, Wastney ME, van den Heuvel EG, Weaver CM.

Br J Nutr. 2013 Oct;110(7):1292-303. doi: 10.1017/S000711451300055X. Epub 2013 Mar 14.

PMID:
23507173
17.

Comparison of Yacon (Smallanthus sonchifolius) Tuber with Commercialized Fructo-oligosaccharides (FOS) in Terms of Physiology, Fermentation Products and Intestinal Microbial Communities in Rats.

Utami NW, Sone T, Tanaka M, Nakatsu CH, Saito A, Asano K.

Biosci Microbiota Food Health. 2013;32(4):167-78. doi: 10.12938/bmfh.32.167. Epub 2013 Oct 30.

18.

Resuscitation promoting factor (Rpf) from Tomitella biformata AHU 1821(T) promotes growth and resuscitates non-dividing cells.

Dewi Puspita I, Uehara M, Katayama T, Kikuchi Y, Kitagawa W, Kamagata Y, Asano K, Nakatsu CH, Tanaka M.

Microbes Environ. 2013;28(1):58-64. Epub 2012 Oct 26.

19.

Are uncultivated bacteria really uncultivable?

Puspita ID, Kamagata Y, Tanaka M, Asano K, Nakatsu CH.

Microbes Environ. 2012;27(4):356-66. Epub 2012 Oct 10. Review.

20.

Phylogenetically novel LuxI/LuxR-type quorum sensing systems isolated using a metagenomic approach.

Nasuno E, Kimura N, Fujita MJ, Nakatsu CH, Kamagata Y, Hanada S.

Appl Environ Microbiol. 2012 Nov;78(22):8067-74. doi: 10.1128/AEM.01442-12. Epub 2012 Sep 14.

21.

Surface enhanced Raman spectroscopy (SERS) for the discrimination of Arthrobacter strains based on variations in cell surface composition.

Stephen KE, Homrighausen D, DePalma G, Nakatsu CH, Irudayaraj J.

Analyst. 2012 Sep 21;137(18):4280-6. doi: 10.1039/c2an35578g. Epub 2012 Jul 30.

22.

Galactooligosaccharides improve mineral absorption and bone properties in growing rats through gut fermentation.

Weaver CM, Martin BR, Nakatsu CH, Armstrong AP, Clavijo A, McCabe LD, McCabe GP, Duignan S, Schoterman MH, van den Heuvel EG.

J Agric Food Chem. 2011 Jun 22;59(12):6501-10. doi: 10.1021/jf2009777. Epub 2011 May 25.

PMID:
21553845
23.

Comparison of DNA extraction kits for PCR-DGGE analysis of human intestinal microbial communities from fecal specimens.

Ariefdjohan MW, Savaiano DA, Nakatsu CH.

Nutr J. 2010 May 22;9:23. doi: 10.1186/1475-2891-9-23.

24.

Optimization of RNA extraction for PCR quantification of aromatic compound degradation genes.

Kong W, Nakatsu CH.

Appl Environ Microbiol. 2010 Feb;76(4):1282-4. doi: 10.1128/AEM.01939-09. Epub 2009 Dec 18.

25.

High-level chromate resistance in Arthrobacter sp. strain FB24 requires previously uncharacterized accessory genes.

Henne KL, Nakatsu CH, Thompson DK, Konopka AE.

BMC Microbiol. 2009 Sep 16;9:199. doi: 10.1186/1471-2180-9-199.

26.

Inhibition of nitrate reduction by chromium (VI) in anaerobic soil microcosms.

Kourtev PS, Nakatsu CH, Konopka A.

Appl Environ Microbiol. 2009 Oct;75(19):6249-57. doi: 10.1128/AEM.00347-09. Epub 2009 Aug 14.

27.

Quantification of aromatic oxygenase genes to evaluate enhanced bioremediation by oxygen releasing materials at a gasoline-contaminated site.

Nebe J, Baldwin BR, Kassab RL, Nies L, Nakatsu CH.

Environ Sci Technol. 2009 Mar 15;43(6):2029-34.

PMID:
19368209
28.

Global proteomic analysis of the chromate response in Arthrobacter sp. strain FB24.

Henne KL, Turse JE, Nicora CD, Lipton MS, Tollaksen SL, Lindberg C, Babnigg G, Giometti CS, Nakatsu CH, Thompson DK, Konopka AE.

J Proteome Res. 2009 Apr;8(4):1704-16. doi: 10.1021/pr800705f.

PMID:
19231868
29.

Enumeration of aromatic oxygenase genes to evaluate biodegradation during multi-phase extraction at a gasoline-contaminated site.

Baldwin BR, Nakatsu CH, Nebe J, Wickham GS, Parks C, Nies L.

J Hazard Mater. 2009 Apr 30;163(2-3):524-30. doi: 10.1016/j.jhazmat.2008.07.002. Epub 2008 Jul 9.

PMID:
18706759
30.

Comparative analysis of eight Arthrobacter plasmids.

Jerke K, Nakatsu CH, Beasley F, Konopka A.

Plasmid. 2008 Mar;59(2):73-85. doi: 10.1016/j.plasmid.2007.12.003. Epub 2008 Jan 31.

PMID:
18241920
31.

Biotransformation of 8:2 fluorotelomer alcohol in soil and by soil bacteria isolates.

Liu J, Lee LS, Nies LF, Nakatsu CH, Turcot RF.

Environ Sci Technol. 2007 Dec 1;41(23):8024-30.

PMID:
18186332
32.

Enumeration of aromatic oxygenase genes to evaluate monitored natural attenuation at gasoline-contaminated sites.

Baldwin BR, Nakatsu CH, Nies L.

Water Res. 2008 Feb;42(3):723-31. Epub 2007 Aug 6.

PMID:
17707876
33.

Community dynamics and heterogeneities in mixed bacterial communities subjected to nutrient periodicities.

Konopka A, Carrero-Colon M, Nakatsu CH.

Environ Microbiol. 2007 Jun;9(6):1584-90.

PMID:
17504495
34.

Microbial community dynamics in nutrient-pulsed chemostats.

Carrero-Colón M, Nakatsu CH, Konopka A.

FEMS Microbiol Ecol. 2006 Jul;57(1):1-8.

35.

Effect of nutrient periodicity on microbial community dynamics.

Carrero-Colón M, Nakatsu CH, Konopka A.

Appl Environ Microbiol. 2006 May;72(5):3175-83.

36.

Methylibium petroleiphilum gen. nov., sp. nov., a novel methyl tert-butyl ether-degrading methylotroph of the Betaproteobacteria.

Nakatsu CH, Hristova K, Hanada S, Meng XY, Hanson JR, Scow KM, Kamagata Y.

Int J Syst Evol Microbiol. 2006 May;56(Pt 5):983-9.

PMID:
16627642
37.

Optimization of MALDI-TOF MS for strain level differentiation of Arthrobacter isolates.

Vargha M, Takáts Z, Konopka A, Nakatsu CH.

J Microbiol Methods. 2006 Sep;66(3):399-409. Epub 2006 Mar 2.

PMID:
16513195
38.

Bacterial activity, community structure, and centimeter-scale spatial heterogeneity in contaminated soil.

Becker JM, Parkin T, Nakatsu CH, Wilbur JD, Konopka A.

Microb Ecol. 2006 Feb;51(2):220-31. Epub 2006 Feb 10.

PMID:
16463134
39.

Microbial community analysis of soils contaminated with lead, chromium and petroleum hydrocarbons.

Joynt J, Bischoff M, Turco R, Konopka A, Nakatsu CH.

Microb Ecol. 2006 Feb;51(2):209-19. Epub 2006 Feb 10.

PMID:
16463132
40.
41.

Soil microbial community responses to additions of organic carbon substrates and heavy metals (Pb and Cr).

Nakatsu CH, Carmosini N, Baldwin B, Beasley F, Kourtev P, Konopka A.

Appl Environ Microbiol. 2005 Dec;71(12):7679-89.

43.

Cytotoxicity potential and genotypic characterization of Escherichia coli isolates from environmental and food sources.

Maldonado Y, Fiser JC, Nakatsu CH, Bhunia AK.

Appl Environ Microbiol. 2005 Apr;71(4):1890-8.

44.

Comparison of genotypic-based microbial source tracking methods requiring a host origin database.

Myoda SP, Carson CA, Fuhrmann JJ, Hahm BK, Hartel PG, Yampara-Lquise H, Johnson L, Kuntz RL, Nakatsu CH, Sadowsky MJ, Samadpour M.

J Water Health. 2003 Dec;1(4):167-80.

PMID:
15382722
45.
46.

Analysis of environmental Escherichia coli isolates for virulence genes using the TaqMan PCR system.

Davis KC, Nakatsu CH, Turco R, Weagant SD, Bhunia AK.

J Appl Microbiol. 2003;95(3):612-20.

47.

Detection and enumeration of aromatic oxygenase genes by multiplex and real-time PCR.

Baldwin BR, Nakatsu CH, Nies L.

Appl Environ Microbiol. 2003 Jun;69(6):3350-8.

48.

Subtyping of foodborne and environmental isolates of Escherichia coli by multiplex-PCR, rep-PCR, PFGE, ribotyping and AFLP.

Hahm BK, Maldonado Y, Schreiber E, Bhunia AK, Nakatsu CH.

J Microbiol Methods. 2003 Jun;53(3):387-99.

PMID:
12689716
49.

Functional and structural adaptations of bacterial communities growing on particulate substrates under stringent nutrient limitation.

LaPara TM, Zakharova T, Nakatsu CH, Konopka A.

Microb Ecol. 2002 Nov;44(4):317-26. Epub 2002 Oct 29.

PMID:
12399897
50.

Variable selection in high-dimensional multivariate binary data with application to the analysis of microbial community DNA fingerprints.

Wilbur JD, Ghosh JK, Nakatsu CH, Brouder SM, Doerge RW.

Biometrics. 2002 Jun;58(2):378-86.

PMID:
12071411

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