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Items: 1 to 50 of 74

1.

Core microbiomes for sustainable agroecosystems.

Toju H, Peay KG, Yamamichi M, Narisawa K, Hiruma K, Naito K, Fukuda S, Ushio M, Nakaoka S, Onoda Y, Yoshida K, Schlaeppi K, Bai Y, Sugiura R, Ichihashi Y, Minamisawa K, Kiers ET.

Nat Plants. 2018 May;4(5):247-257. doi: 10.1038/s41477-018-0139-4. Review.

PMID:
29725101
2.

A PDE multiscale model of hepatitis C virus infection can be transformed to a system of ODEs.

Kitagawa K, Nakaoka S, Asai Y, Watashi K, Iwami S.

J Theor Biol. 2018 Jul 7;448:80-85. doi: 10.1016/j.jtbi.2018.04.006. Epub 2018 Apr 7.

PMID:
29634960
3.

The CCR4-NOT deadenylase complex controls Atg7-dependent cell death and heart function.

Yamaguchi T, Suzuki T, Sato T, Takahashi A, Watanabe H, Kadowaki A, Natsui M, Inagaki H, Arakawa S, Nakaoka S, Koizumi Y, Seki S, Adachi S, Fukao A, Fujiwara T, Natsume T, Kimura A, Komatsu M, Shimizu S, Ito H, Suzuki Y, Penninger JM, Yamamoto T, Imai Y, Kuba K.

Sci Signal. 2018 Feb 6;11(516). pii: eaan3638. doi: 10.1126/scisignal.aan3638.

PMID:
29438013
4.

Sporadic on/off switching of HTLV-1 Tax expression is crucial to maintain the whole population of virus-induced leukemic cells.

Mahgoub M, Yasunaga JI, Iwami S, Nakaoka S, Koizumi Y, Shimura K, Matsuoka M.

Proc Natl Acad Sci U S A. 2018 Feb 6;115(6):E1269-E1278. doi: 10.1073/pnas.1715724115. Epub 2018 Jan 22.

5.

Human-Specific Adaptations in Vpu Conferring Anti-tetherin Activity Are Critical for Efficient Early HIV-1 Replication In Vivo.

Yamada E, Nakaoka S, Klein L, Reith E, Langer S, Hopfensperger K, Iwami S, Schreiber G, Kirchhoff F, Koyanagi Y, Sauter D, Sato K.

Cell Host Microbe. 2018 Jan 10;23(1):110-120.e7. doi: 10.1016/j.chom.2017.12.009.

PMID:
29324226
6.

Depression among older Japanese Americans: The impact of functional (ADL & IADL) and cognitive status.

Kim BJ, Liu L, Nakaoka S, Jang S, Browne C.

Soc Work Health Care. 2018 Feb;57(2):109-125. doi: 10.1080/00981389.2017.1397588. Epub 2017 Dec 13.

PMID:
29236614
7.

Correction: HIV-1 competition experiments in humanized mice show that APOBEC3H imposes selective pressure and promotes virus adaptation.

Nakano Y, Misawa N, Juarez-Fernandez G, Moriwaki M, Nakaoka S, Funo T, Yamada E, Soper A, Yoshikawa R, Ebrahimi D, Tachiki Y, Iwami S, Harris RS, Koyanagi Y, Sato K.

PLoS Pathog. 2017 Sep 7;13(9):e1006606. doi: 10.1371/journal.ppat.1006606. eCollection 2017 Sep.

8.

Number of infection events per cell during HIV-1 cell-free infection.

Ito Y, Remion A, Tauzin A, Ejima K, Nakaoka S, Iwasa Y, Iwami S, Mammano F.

Sci Rep. 2017 Jul 26;7(1):6559. doi: 10.1038/s41598-017-03954-9.

9.

Erratum to: Daphnia revisited: local stability and bifurcation theory for physiologically structured population models explained by way of an example.

Diekmann O, Gyllenberg M, Metz JAJ, Nakaoka S, de Roos AM.

J Math Biol. 2017 Jul;75(1):259-261. doi: 10.1007/s00285-017-1148-z. No abstract available.

PMID:
28631043
10.

Molecular dynamics analysis of the friction between a water-methanol liquid mixture and a non-polar solid crystal surface.

Nakaoka S, Yamaguchi Y, Omori T, Joly L.

J Chem Phys. 2017 May 7;146(17):174702. doi: 10.1063/1.4982617.

PMID:
28477596
11.

HIV-1 competition experiments in humanized mice show that APOBEC3H imposes selective pressure and promotes virus adaptation.

Nakano Y, Misawa N, Juarez-Fernandez G, Moriwaki M, Nakaoka S, Funo T, Yamada E, Soper A, Yoshikawa R, Ebrahimi D, Tachiki Y, Iwami S, Harris RS, Koyanagi Y, Sato K.

PLoS Pathog. 2017 May 5;13(5):e1006348. doi: 10.1371/journal.ppat.1006348. eCollection 2017 May. Erratum in: PLoS Pathog. 2017 Sep 7;13(9):e1006606.

12.

A highly pathogenic simian/human immunodeficiency virus effectively produces infectious virions compared with a less pathogenic virus in cell culture.

Iwanami S, Kakizoe Y, Morita S, Miura T, Nakaoka S, Iwami S.

Theor Biol Med Model. 2017 Apr 21;14(1):9. doi: 10.1186/s12976-017-0055-8.

13.

A novel PLP1 mutation F240L identified in a patient with connatal type Pelizaeus-Merzbacher disease.

Lu Y, Shimojima K, Sakuma T, Nakaoka S, Yamamoto T.

Hum Genome Var. 2017 Jan 5;4:16044. doi: 10.1038/hgv.2016.44. eCollection 2017.

14.

Modelling Ebola virus dynamics: Implications for therapy.

Martyushev A, Nakaoka S, Sato K, Noda T, Iwami S.

Antiviral Res. 2016 Nov;135:62-73. doi: 10.1016/j.antiviral.2016.10.004. Epub 2016 Oct 12.

PMID:
27743917
15.

Caffeine Toxicity in a Preterm Neonate.

Nakaoka S, Kawasaki Y, Inomata S, Makimoto M, Yoshida T.

Pediatr Neonatol. 2017 Aug;58(4):380-381. doi: 10.1016/j.pedneo.2016.08.001. Epub 2016 Sep 14. No abstract available.

16.

The Impacts of Social Support and Cognitive Function on Depression among Community-Dwelling Older Japanese Americans.

Kim BJ, Nakaoka S, Underwood C.

Soc Work Public Health. 2017 Feb 17;32(2):82-93. doi: 10.1080/19371918.2016.1188747. Epub 2016 Sep 23.

PMID:
27662114
17.
18.

Weighted enrichment method for prediction of transcription regulators from transcriptome and global chromatin immunoprecipitation data.

Kawakami E, Nakaoka S, Ohta T, Kitano H.

Nucleic Acids Res. 2016 Jun 20;44(11):5010-21. doi: 10.1093/nar/gkw355. Epub 2016 Apr 30.

19.

Hyperactivation of JAK1 tyrosine kinase induces stepwise, progressive pruritic dermatitis.

Yasuda T, Fukada T, Nishida K, Nakayama M, Matsuda M, Miura I, Dainichi T, Fukuda S, Kabashima K, Nakaoka S, Bin BH, Kubo M, Ohno H, Hasegawa T, Ohara O, Koseki H, Wakana S, Yoshida H.

J Clin Invest. 2016 Jun 1;126(6):2064-76. doi: 10.1172/JCI82887. Epub 2016 Apr 25.

20.

Quantifying the effect of Vpu on the promotion of HIV-1 replication in the humanized mouse model.

Ikeda H, Nakaoka S, de Boer RJ, Morita S, Misawa N, Koyanagi Y, Aihara K, Sato K, Iwami S.

Retrovirology. 2016 Apr 18;13:23. doi: 10.1186/s12977-016-0252-2.

21.

Identifying determinants of heterogeneous transmission dynamics of the Middle East respiratory syndrome (MERS) outbreak in the Republic of Korea, 2015: a retrospective epidemiological analysis.

Nishiura H, Endo A, Saitoh M, Kinoshita R, Ueno R, Nakaoka S, Miyamatsu Y, Dong Y, Chowell G, Mizumoto K.

BMJ Open. 2016 Feb 23;6(2):e009936. doi: 10.1136/bmjopen-2015-009936.

22.

Maleimide-assisted anti-Markovnikov Wacker-type oxidation of vinylarenes using molecular oxygen as a terminal oxidant.

Nakaoka S, Murakami Y, Kataoka Y, Ura Y.

Chem Commun (Camb). 2016 Jan 7;52(2):335-8. doi: 10.1039/c5cc06746d. Epub 2015 Oct 30.

PMID:
26514316
23.

Dynamics of HIV infection in lymphoid tissue network.

Nakaoka S, Iwami S, Sato K.

J Math Biol. 2016 Mar;72(4):909-38. doi: 10.1007/s00285-015-0940-x. Epub 2015 Oct 27.

PMID:
26507442
24.

Cell-to-cell infection by HIV contributes over half of virus infection.

Iwami S, Takeuchi JS, Nakaoka S, Mammano F, Clavel F, Inaba H, Kobayashi T, Misawa N, Aihara K, Koyanagi Y, Sato K.

Elife. 2015 Oct 6;4. doi: 10.7554/eLife.08150.

25.

Molecular dynamics analysis of the velocity slip of a water and methanol liquid mixture.

Nakaoka S, Yamaguchi Y, Omori T, Kagawa M, Nakajima T, Fujimura H.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Aug;92(2):022402. Epub 2015 Aug 4.

PMID:
26382411
26.

Insecticide applications to soil contribute to the development of Burkholderia mediating insecticide resistance in stinkbugs.

Tago K, Kikuchi Y, Nakaoka S, Katsuyama C, Hayatsu M.

Mol Ecol. 2015 Jul;24(14):3766-78. doi: 10.1111/mec.13265. Epub 2015 Jul 2.

PMID:
26059639
27.

A method to determine the duration of the eclipse phase for in vitro infection with a highly pathogenic SHIV strain.

Kakizoe Y, Nakaoka S, Beauchemin CA, Morita S, Mori H, Igarashi T, Aihara K, Miura T, Iwami S.

Sci Rep. 2015 May 21;5:10371. doi: 10.1038/srep10371.

28.

A Genetically Encoded FRET Probe to Detect Intranucleosomal Histone H3K9 or H3K14 Acetylation Using BRD4, a BET Family Member.

Nakaoka S, Sasaki K, Ito A, Nakao Y, Yoshida M.

ACS Chem Biol. 2016 Mar 18;11(3):729-33. doi: 10.1021/cb501046t. Epub 2015 May 15.

PMID:
25946208
29.

A conservation law for virus infection kinetics in vitro.

Kakizoe Y, Morita S, Nakaoka S, Takeuchi Y, Sato K, Miura T, Beauchemin CA, Iwami S.

J Theor Biol. 2015 Jul 7;376:39-47. doi: 10.1016/j.jtbi.2015.03.034. Epub 2015 Apr 14.

PMID:
25882746
30.

Prescribing pattern of anti-Parkinson drugs in Japan: a trend analysis from 2005 to 2010.

Nakaoka S, Ishizaki T, Urushihara H, Satoh T, Ikeda S, Yamamoto M, Nakayama T.

PLoS One. 2014 Jun 6;9(6):e99021. doi: 10.1371/journal.pone.0099021. eCollection 2014. Erratum in: PLoS One. 2014;9(8):e106217.

31.
32.

Cost-effective length and timing of school closure during an influenza pandemic depend on the severity.

Nishiura H, Ejima K, Mizumoto K, Nakaoka S, Inaba H, Imoto S, Yamaguchi R, Saito MM.

Theor Biol Med Model. 2014 Jan 21;11:5. doi: 10.1186/1742-4682-11-5.

33.

Demographic modeling of transient amplifying cell population growth.

Nakaoka S, Inaba H.

Math Biosci Eng. 2014 Apr;11(2):363-84. doi: 10.3934/mbe.2014.11.363.

PMID:
24245725
34.

Stochastic simulation of structured skin cell population dynamics.

Nakaoka S, Aihara K.

J Math Biol. 2013 Mar;66(4-5):807-35. doi: 10.1007/s00285-012-0618-6. Epub 2012 Dec 20.

PMID:
23255068
35.

Mathematical study on kinetics of hematopoietic stem cells--theoretical conditions for successful transplantation.

Nakaoka S, Aihara K.

J Biol Dyn. 2012;6:836-54. doi: 10.1080/17513758.2011.588343. Epub 2011 Jun 14.

PMID:
22873618
36.

A de novo interstitial deletion of 8p11.2 including ANK1 identified in a patient with spherocytosis, psychomotor developmental delay, and distinctive facial features.

Miya K, Shimojima K, Sugawara M, Shimada S, Tsuri H, Harai-Tanaka T, Nakaoka S, Kanegane H, Miyawaki T, Yamamoto T.

Gene. 2012 Sep 10;506(1):146-9. doi: 10.1016/j.gene.2012.06.086. Epub 2012 Jul 4. Review.

PMID:
22771917
37.

Palladium-catalyzed synthesis of terminal acetals via highly selective anti-Markovnikov nucleophilic attack of pinacol on vinylarenes, allyl ethers, and 1,5-dienes.

Yamamoto M, Nakaoka S, Ura Y, Kataoka Y.

Chem Commun (Camb). 2012 Jan 28;48(8):1165-7. doi: 10.1039/c2cc16561a. Epub 2011 Dec 12.

PMID:
22159568
38.

Echocardiography for the detection of valvulopathy associated with the use of ergot-derived dopamine agonists in patients with Parkinson's disease.

Nakaoka S, Ishizaki T, Urushihara H, Satoh T, Ikeda S, Morikawa K, Nakayama T.

Intern Med. 2011;50(7):687-94. Epub 2011 Apr 1.

39.

Daphnia revisited: local stability and bifurcation theory for physiologically structured population models explained by way of an example.

Diekmann O, Gyllenberg M, Metz JAJ, Nakaoka S, de Roos AM.

J Math Biol. 2010 Aug;61(2):277-318. doi: 10.1007/s00285-009-0299-y. Epub 2009 Sep 22. Erratum in: J Math Biol. 2017 Jul;75(1):259-261.

PMID:
19771433
40.

Immune impairment in HIV infection: existence of risky and immunodeficiency thresholds.

Iwami S, Miura T, Nakaoka S, Takeuchi Y.

J Theor Biol. 2009 Oct 21;260(4):490-501. doi: 10.1016/j.jtbi.2009.06.023. Epub 2009 Jul 3.

PMID:
19577579
41.

Effect of parental care and aggregation on population dynamics.

Nakaoka S, Wang W, Takeuchi Y.

J Theor Biol. 2009 Sep 7;260(1):161-71. doi: 10.1016/j.jtbi.2009.06.012. Epub 2009 Jun 17.

PMID:
19539631
42.

Immune impairment thresholds in HIV infection.

Iwami S, Nakaoka S, Takeuchi Y, Miura Y, Miura T.

Immunol Lett. 2009 Apr 27;123(2):149-54. doi: 10.1016/j.imlet.2009.03.007. Epub 2009 Mar 24.

PMID:
19428563
43.

A geographical spread of vaccine-resistance in avian influenza epidemics.

Iwami S, Takeuchi Y, Liu X, Nakaoka S.

J Theor Biol. 2009 Jul 21;259(2):219-28. doi: 10.1016/j.jtbi.2009.03.040. Epub 2009 Apr 8.

PMID:
19361532
44.

Dynamical adaptation of parental care.

Takeuchi Y, Wang W, Nakaoka S, Iwami S.

Bull Math Biol. 2009 May;71(4):931-51. doi: 10.1007/s11538-008-9388-0. Epub 2009 Feb 20.

PMID:
19229659
45.

Complementary cooperation between two syntrophic bacteria in pesticide degradation.

Katsuyama C, Nakaoka S, Takeuchi Y, Tago K, Hayatsu M, Kato K.

J Theor Biol. 2009 Feb 21;256(4):644-54. doi: 10.1016/j.jtbi.2008.10.024. Epub 2008 Nov 11.

PMID:
19038271
46.

Mathematical analysis of a HIV model with frequency dependence and viral diversity.

Iwami S, Nakaoka S, Takeuchi Y.

Math Biosci Eng. 2008 Jul;5(3):457-76.

PMID:
18616352
47.

Viral diversity limits immune diversity in asymptomatic phase of HIV infection.

Iwami S, Nakaoka S, Takeuchi Y.

Theor Popul Biol. 2008 May;73(3):332-41. doi: 10.1016/j.tpb.2008.01.003. Epub 2008 Feb 7.

PMID:
18342352
48.

Invest conflicts of adult predators.

Wang W, Nakaoka S, Takeuchi Y.

J Theor Biol. 2008 Jul 7;253(1):12-23. Epub 2007 Sep 22.

PMID:
17961601
49.

Low serum level of hepatitis B core-related antigen indicates unlikely reactivation of hepatitis after cessation of lamivudine therapy.

Matsumoto A, Tanaka E, Minami M, Okanoue T, Yatsuhashi H, Nagaoka S, Suzuki F, Kobayashi M, Chayama K, Imamura M, Yotsuyanagi H, Nakaoka S, Maki N, Kawata S, Kumada H, Iino S, Kiyosawa K.

Hepatol Res. 2007 Aug;37(8):661-6.

PMID:
17584261
50.

Competition in chemostat-type equations with two habitats.

Nakaoka S, Takeuchi Y.

Math Biosci. 2006 May;201(1-2):157-71. Epub 2006 Jan 30.

PMID:
16448673

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