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Items: 49

1.

Co-existence of two chiral helices produces kink translation in Spiroplasma swimming.

Nakane D, Ito T, Nishizaka T.

J Bacteriol. 2020 Feb 10. pii: JB.00735-19. doi: 10.1128/JB.00735-19. [Epub ahead of print]

PMID:
32041794
2.

Tree of motility - A proposed history of motility systems in the tree of life.

Miyata M, Robinson RC, Uyeda TQP, Fukumori Y, Fukushima SI, Haruta S, Homma M, Inaba K, Ito M, Kaito C, Kato K, Kenri T, Kinosita Y, Kojima S, Minamino T, Mori H, Nakamura S, Nakane D, Nakayama K, Nishiyama M, Shibata S, Shimabukuro K, Tamakoshi M, Taoka A, Tashiro Y, Tulum I, Wada H, Wakabayashi KI.

Genes Cells. 2020 Jan;25(1):6-21. doi: 10.1111/gtc.12737. Review.

3.

Refined Mechanism of Mycoplasma mobile Gliding Based on Structure, ATPase Activity, and Sialic Acid Binding of Machinery.

Nishikawa MS, Nakane D, Toyonaga T, Kawamoto A, Kato T, Namba K, Miyata M.

mBio. 2019 Dec 24;10(6). pii: e02846-19. doi: 10.1128/mBio.02846-19.

4.

Insights into the mechanism of ATP-driven rotary motors from direct torque measurement.

Nishizaka T, Masaike T, Nakane D.

Biophys Rev. 2019 Aug;11(4):653-657. doi: 10.1007/s12551-019-00564-9. Epub 2019 Jul 18. Review.

5.

Motor torque measurement of Halobacterium salinarum archaellar suggests a general model for ATP-driven rotary motors.

Iwata S, Kinosita Y, Uchida N, Nakane D, Nishizaka T.

Commun Biol. 2019 May 24;2:199. doi: 10.1038/s42003-019-0422-6. eCollection 2019.

6.

Single-molecule pull-out manipulation of the shaft of the rotary motor F1-ATPase.

Naito TM, Masaike T, Nakane D, Sugawa M, Okada KA, Nishizaka T.

Sci Rep. 2019 May 15;9(1):7451. doi: 10.1038/s41598-019-43903-2.

7.

Characterization of Zoospore Type IV Pili in Actinoplanes missouriensis.

Kimura T, Tezuka T, Nakane D, Nishizaka T, Aizawa SI, Ohnishi Y.

J Bacteriol. 2019 Jun 21;201(14). pii: e00746-18. doi: 10.1128/JB.00746-18. Print 2019 Jul 15.

8.

Three-dimensional tracking of microbeads attached to the tip of single isolated tracheal cilia beating under external load.

Katoh TA, Ikegami K, Uchida N, Iwase T, Nakane D, Masaike T, Setou M, Nishizaka T.

Sci Rep. 2018 Oct 22;8(1):15562. doi: 10.1038/s41598-018-33846-5.

9.

Immunoglobulin-like domains of the cargo proteins are essential for protein stability during secretion by the type IX secretion system.

Sato K, Kakuda S, Yukitake H, Kondo Y, Shoji M, Takebe K, Narita Y, Naito M, Nakane D, Abiko Y, Hiratsuka K, Suzuki M, Nakayama K.

Mol Microbiol. 2018 Oct;110(1):64-81. doi: 10.1111/mmi.14083. Epub 2018 Oct 4.

PMID:
30030863
10.

Identification of a major glucose transporter in Flavobacterium johnsoniae: Inhibition of F. johnsoniae colony spreading by glucose uptake.

Imamura K, Sato K, Narita Y, Kondo Y, Nakane D, Naito M, Fujiwara T, Nakayama K.

Microbiol Immunol. 2018 Aug;62(8):507-516. doi: 10.1111/1348-0421.12633.

PMID:
29932229
11.

Unforeseen swimming and gliding mode of an insect gut symbiont, Burkholderia sp. RPE64, with wrapping of the flagella around its cell body.

Kinosita Y, Kikuchi Y, Mikami N, Nakane D, Nishizaka T.

ISME J. 2018 Mar;12(3):838-848. doi: 10.1038/s41396-017-0010-z. Epub 2017 Dec 21.

12.

Effect of Gold Nanoparticle Distribution in TiO2 on the Optical and Electrical Characteristics of Dye-Sensitized Solar Cells.

Mayumi S, Ikeguchi Y, Nakane D, Ishikawa Y, Uraoka Y, Ikeguchi M.

Nanoscale Res Lett. 2017 Aug 29;12(1):513. doi: 10.1186/s11671-017-2285-4.

13.

Asymmetric distribution of type IV pili triggered by directional light in unicellular cyanobacteria.

Nakane D, Nishizaka T.

Proc Natl Acad Sci U S A. 2017 Jun 20;114(25):6593-6598. doi: 10.1073/pnas.1702395114. Epub 2017 Jun 5.

14.

Triphosphate Ion-Selective Electrode Based on Zr-Porphyrin Complex.

Yagi Y, Masaki S, Iwata T, Nakane D, Yasui T, Yuchi A.

Anal Chem. 2017 Apr 4;89(7):3937-3942. doi: 10.1021/acs.analchem.6b03754. Epub 2017 Mar 16.

PMID:
28266211
15.

Chemotaxis without Conventional Two-Component System, Based on Cell Polarity and Aerobic Conditions in Helicity-Switching Swimming of Spiroplasma eriocheiris.

Liu P, Zheng H, Meng Q, Terahara N, Gu W, Wang S, Zhao G, Nakane D, Wang W, Miyata M.

Front Microbiol. 2017 Feb 3;8:58. doi: 10.3389/fmicb.2017.00058. eCollection 2017.

16.

Direct observation of rotation and steps of the archaellum in the swimming halophilic archaeon Halobacterium salinarum.

Kinosita Y, Uchida N, Nakane D, Nishizaka T.

Nat Microbiol. 2016 Aug 26;1(11):16148. doi: 10.1038/nmicrobiol.2016.148.

PMID:
27564999
17.

Directed Binding of Gliding Bacterium, Mycoplasma mobile, Shown by Detachment Force and Bond Lifetime.

Tanaka A, Nakane D, Mizutani M, Nishizaka T, Miyata M.

mBio. 2016 Jun 28;7(3). pii: e00455-16. doi: 10.1128/mBio.00455-16.

18.

Systematic Structural Analyses of Attachment Organelle in Mycoplasma pneumoniae.

Nakane D, Kenri T, Matsuo L, Miyata M.

PLoS Pathog. 2015 Dec 3;11(12):e1005299. doi: 10.1371/journal.ppat.1005299. eCollection 2015 Dec.

19.

[Mechanism of bacterial gliding motility].

Nakane D.

Nihon Saikingaku Zasshi. 2015;70(4):375-82. doi: 10.3412/jsb.70.375. Review. Japanese.

20.

Flavobacterium gliding motility and the type IX secretion system.

McBride MJ, Nakane D.

Curr Opin Microbiol. 2015 Dec;28:72-7. doi: 10.1016/j.mib.2015.07.016. Epub 2015 Oct 23. Review.

PMID:
26461123
21.

Organocatalytic enantioselective decarboxylative reaction of malonic acid half thioesters with cyclic N-sulfonyl ketimines by using N-heteroarenesulfonyl cinchona alkaloid amides.

Nakamura S, Sano M, Toda A, Nakane D, Masuda H.

Chemistry. 2015 Mar 2;21(10):3929-32. doi: 10.1002/chem.201406270. Epub 2015 Jan 22.

PMID:
25614368
22.

Organocatalytic enantioselective addition of thiols to ketimines derived from isatins.

Nakamura S, Takahashi S, Nakane D, Masuda H.

Org Lett. 2015 Jan 2;17(1):106-9. doi: 10.1021/ol503309s. Epub 2014 Dec 19.

PMID:
25526427
23.

Bacteriocin protein BacL1 of Enterococcus faecalis targets cell division loci and specifically recognizes L-Ala2-cross-bridged peptidoglycan.

Kurushima J, Nakane D, Nishizaka T, Tomita H.

J Bacteriol. 2015 Jan;197(2):286-95. doi: 10.1128/JB.02203-14. Epub 2014 Nov 3.

24.

Lack of a surface layer in Tannerella forsythia mutants deficient in the type IX secretion system.

Narita Y, Sato K, Yukitake H, Shoji M, Nakane D, Nagano K, Yoshimura F, Naito M, Nakayama K.

Microbiology. 2014 Oct;160(Pt 10):2295-2303. doi: 10.1099/mic.0.080192-0. Epub 2014 Jul 14.

25.

Direct asymmetric Mannich-type reaction of α-isocyanoacetates with ketimines using cinchona alkaloid/copper(II) catalysts.

Hayashi M, Iwanaga M, Shiomi N, Nakane D, Masuda H, Nakamura S.

Angew Chem Int Ed Engl. 2014 Aug 4;53(32):8411-5. doi: 10.1002/anie.201404629. Epub 2014 Jul 1.

PMID:
24985050
26.

A novel square-planar Ni(II) complex with an amino-carboxamido-dithiolato-type ligand as an active-site model of NiSOD.

Nakane D, Wasada-Tsutsui Y, Funahashi Y, Hatanaka T, Ozawa T, Masuda H.

Inorg Chem. 2014 Jul 7;53(13):6512-23. doi: 10.1021/ic402574d. Epub 2014 Jun 18.

PMID:
24940594
27.

Unitary step of gliding machinery in Mycoplasma mobile.

Kinosita Y, Nakane D, Sugawa M, Masaike T, Mizutani K, Miyata M, Nishizaka T.

Proc Natl Acad Sci U S A. 2014 Jun 10;111(23):8601-6. doi: 10.1073/pnas.1310355111. Epub 2014 May 27.

28.

Bidirectional bacterial gliding motility powered by the collective transport of cell surface proteins.

Wada H, Nakane D, Chen HY.

Phys Rev Lett. 2013 Dec 13;111(24):248102. Epub 2013 Dec 11.

PMID:
24483703
29.

Enantioselective monofluoromethylation of aldehydes with 2-fluoro-1,3-benzodithiole-1,1,3,3-tetraoxide catalyzed by a bifunctional cinchona alkaloid-derived thiourea-titanium complex.

Ma H, Matsuzaki K, Yang YD, Tokunaga E, Nakane D, Ozawa T, Masuda H, Shibata N.

Chem Commun (Camb). 2013 Dec 11;49(95):11206-8. doi: 10.1039/c3cc46544f. Epub 2013 Oct 23.

PMID:
24153160
30.

Helical flow of surface protein required for bacterial gliding motility.

Nakane D, Sato K, Wada H, McBride MJ, Nakayama K.

Proc Natl Acad Sci U S A. 2013 Jul 2;110(27):11145-50. doi: 10.1073/pnas.1219753110. Epub 2013 Jun 18.

31.

Catalytic enantioselective allylation of ketimines by using palladium pincer complexes with chiral bis(imidazoline)s.

Nakamura S, Hyodo K, Nakamura M, Nakane D, Masuda H.

Chemistry. 2013 Jun 3;19(23):7304-9. doi: 10.1002/chem.201300685. Epub 2013 Apr 30.

PMID:
23633426
32.

Decoding system for the AUA codon by tRNAIle with the UAU anticodon in Mycoplasma mobile.

Taniguchi T, Miyauchi K, Nakane D, Miyata M, Muto A, Nishimura S, Suzuki T.

Nucleic Acids Res. 2013 Feb 1;41(4):2621-31. doi: 10.1093/nar/gks1344. Epub 2013 Jan 7.

33.

Role of binding in Mycoplasma mobile and Mycoplasma pneumoniae gliding analyzed through inhibition by synthesized sialylated compounds.

Kasai T, Nakane D, Ishida H, Ando H, Kiso M, Miyata M.

J Bacteriol. 2013 Feb;195(3):429-35. doi: 10.1128/JB.01141-12. Epub 2012 Nov 2.

34.

Quantum-enhanced optical-phase tracking.

Yonezawa H, Nakane D, Wheatley TA, Iwasawa K, Takeda S, Arao H, Ohki K, Tsumura K, Berry DW, Ralph TC, Wiseman HM, Huntington EH, Furusawa A.

Science. 2012 Sep 21;337(6101):1514-7.

35.

Flavobacterium johnsoniae RemA is a mobile cell surface lectin involved in gliding.

Shrivastava A, Rhodes RG, Pochiraju S, Nakane D, McBride MJ.

J Bacteriol. 2012 Jul;194(14):3678-88. doi: 10.1128/JB.00588-12. Epub 2012 May 11.

36.

"Mycoplasmal antigen modulation," a novel surface variation suggested for a lipoprotein specifically localized on Mycoplasma mobile.

Wu HN, Kawaguchi C, Nakane D, Miyata M.

Curr Microbiol. 2012 May;64(5):433-40. doi: 10.1007/s00284-012-0090-y. Epub 2012 Feb 15.

PMID:
22349955
37.

Rapid imaging of mycoplasma in solution using Atmospheric Scanning Electron Microscopy (ASEM).

Sato C, Manaka S, Nakane D, Nishiyama H, Suga M, Nishizaka T, Miyata M, Maruyama Y.

Biochem Biophys Res Commun. 2012 Jan 27;417(4):1213-8. doi: 10.1016/j.bbrc.2011.12.111. Epub 2011 Dec 29.

PMID:
22226908
38.

Mycoplasma mobile cells elongated by detergent and their pivoting movements in gliding.

Nakane D, Miyata M.

J Bacteriol. 2012 Jan;194(1):122-30. doi: 10.1128/JB.05857-11. Epub 2011 Oct 14.

39.

Creation of a type 1 blue copper site within a de novo coiled-coil protein scaffold.

Shiga D, Nakane D, Inomata T, Funahashi Y, Masuda H, Kikuchi A, Oda M, Noda M, Uchiyama S, Fukui K, Kanaori K, Tajima K, Takano Y, Nakamura H, Tanaka T.

J Am Chem Soc. 2010 Dec 29;132(51):18191-8. doi: 10.1021/ja106263y. Epub 2010 Dec 2.

PMID:
21126081
40.

Isolation and characterization of P1 adhesin, a leg protein of the gliding bacterium Mycoplasma pneumoniae.

Nakane D, Adan-Kubo J, Kenri T, Miyata M.

J Bacteriol. 2011 Feb;193(3):715-22. doi: 10.1128/JB.00796-10. Epub 2010 Nov 19.

41.

Adaptive optical phase estimation using time-symmetric quantum smoothing.

Wheatley TA, Berry DW, Yonezawa H, Nakane D, Arao H, Pope DT, Ralph TC, Wiseman HM, Furusawa A, Huntington EH.

Phys Rev Lett. 2010 Mar 5;104(9):093601. Epub 2010 Mar 3.

PMID:
20366982
42.

A square-planar Ni(II) complex with an N2S2 donor set similar to the active centre of nickel-containing superoxide dismutase and its reaction with superoxide.

Nakane D, Kuwasako SI, Tsuge M, Kubo M, Funahashi Y, Ozawa T, Ogura T, Masuda H.

Chem Commun (Camb). 2010 Mar 28;46(12):2142-4. doi: 10.1039/b925755a. Epub 2010 Feb 12.

PMID:
20221519
43.

The effect of the side chain length of Asp and Glu on coordination structure of Cu(2+) in a de novo designed protein.

Shiga D, Nakane D, Inomata T, Masuda H, Oda M, Noda M, Uchiyama S, Fukui K, Takano Y, Nakamura H, Mizuno T, Tanaka T.

Biopolymers. 2009 Nov;91(11):907-16. doi: 10.1002/bip.21277.

PMID:
19598226
44.
45.
46.

Cytoskeletal "jellyfish" structure of Mycoplasma mobile.

Nakane D, Miyata M.

Proc Natl Acad Sci U S A. 2007 Dec 4;104(49):19518-23. Epub 2007 Nov 27.

47.

Highly enantioselective reactions of alpha-sulfonyl carbanions of trifluoromethyl sulfones.

Nakamura S, Hirata N, Kita T, Yamada R, Nakane D, Shibata N, Toru T.

Angew Chem Int Ed Engl. 2007;46(40):7648-50. No abstract available.

PMID:
17763512
48.

Cloning and characterization of a rat ortholog of MMP-23 (matrix metalloproteinase-23), a unique type of membrane-anchored matrix metalloproteinase and conditioned switching of its expression during the ovarian follicular development.

Ohnishi J, Ohnishi E, Jin M, Hirano W, Nakane D, Matsui H, Kimura A, Sawa H, Nakayama K, Shibuya H, Nagashima K, Takahashi T.

Mol Endocrinol. 2001 May;15(5):747-64.

PMID:
11328856
49.

Synthesis of the Tricyclic Skeleton of Cyathins Using Brook Rearrangement-Mediated

Takeda K, Nakane D, Takeda M.

Org Lett. 2000 Jun 29;2(13):1903-1905.

PMID:
10891187

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