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Items: 1 to 50 of 69

1.

Author Correction: Reconstruction of cysteine biosynthesis using engineered cysteine-free enzymes.

Fujishima K, Wang KM, Palmer JA, Abe N, Nakahigashi K, Endy D, Rothschild LJ.

Sci Rep. 2019 Apr 12;9(1):6242. doi: 10.1038/s41598-019-42196-9.

2.

A Metabolomic-Based Evaluation of the Role of Commensal Microbiota throughout the Gastrointestinal Tract in Mice.

Yamamoto Y, Nakanishi Y, Murakami S, Aw W, Tsukimi T, Nozu R, Ueno M, Hioki K, Nakahigashi K, Hirayama A, Sugimoto M, Soga T, Ito M, Tomita M, Fukuda S.

Microorganisms. 2018 Sep 29;6(4). pii: E101. doi: 10.3390/microorganisms6040101.

3.

Giant rhyolite lava dome formation after 7.3 ka supereruption at Kikai caldera, SW Japan.

Tatsumi Y, Suzuki-Kamata K, Matsuno T, Ichihara H, Seama N, Kiyosugi K, Nakaoka R, Nakahigashi K, Takizawa H, Hayashi K, Chiba T, Shimizu S, Sano M, Iwamaru H, Morozumi H, Sugioka H, Yamamoto Y.

Sci Rep. 2018 Feb 9;8(1):2753. doi: 10.1038/s41598-018-21066-w.

4.

Reconstruction of cysteine biosynthesis using engineered cysteine-free enzymes.

Fujishima K, Wang KM, Palmer JA, Abe N, Nakahigashi K, Endy D, Rothschild LJ.

Sci Rep. 2018 Jan 29;8(1):1776. doi: 10.1038/s41598-018-19920-y. Erratum in: Sci Rep. 2019 Apr 12;9(1):6242.

5.

Systematic characterization of artificial small RNA-mediated inhibition of Escherichia coli growth.

Noro E, Mori M, Makino G, Takai Y, Ohnuma S, Sato A, Tomita M, Nakahigashi K, Kanai A.

RNA Biol. 2017 Feb;14(2):206-218. doi: 10.1080/15476286.2016.1270001. Epub 2016 Dec 16.

6.

Comprehensive identification of translation start sites by tetracycline-inhibited ribosome profiling.

Nakahigashi K, Takai Y, Kimura M, Abe N, Nakayashiki T, Shiwa Y, Yoshikawa H, Wanner BL, Ishihama Y, Mori H.

DNA Res. 2016 Jun;23(3):193-201. doi: 10.1093/dnares/dsw008. Epub 2016 Mar 23.

7.

Phylogenetic Position and Molecular Chronology of a Colonial Green Flagellate, Stephanosphaera pluvialis (Volvocales, Chlorophyceae), among Unicellular Algae.

Munakata H, Nakada T, Nakahigashi K, Nozaki H, Tomita M.

J Eukaryot Microbiol. 2016 May;63(3):340-8. doi: 10.1111/jeu.12283. Epub 2015 Dec 16. Erratum in: J Eukaryot Microbiol. 2016 Sep;63(5):694.

PMID:
26595722
8.

Identification of a Cyanobacterial RND-Type Efflux System Involved in Export of Free Fatty Acids.

Kato A, Takatani N, Use K, Uesaka K, Ikeda K, Chang Y, Kojima K, Aichi M, Ihara K, Nakahigashi K, Maeda S, Omata T.

Plant Cell Physiol. 2015 Dec;56(12):2467-77. doi: 10.1093/pcp/pcv150. Epub 2015 Oct 14.

PMID:
26468506
9.

Effect of codon adaptation on codon-level and gene-level translation efficiency in vivo.

Nakahigashi K, Takai Y, Shiwa Y, Wada M, Honma M, Yoshikawa H, Tomita M, Kanai A, Mori H.

BMC Genomics. 2014 Dec 16;15:1115. doi: 10.1186/1471-2164-15-1115.

10.

GenoBase: comprehensive resource database of Escherichia coli K-12.

Otsuka Y, Muto A, Takeuchi R, Okada C, Ishikawa M, Nakamura K, Yamamoto N, Dose H, Nakahigashi K, Tanishima S, Suharnan S, Nomura W, Nakayashiki T, Aref WG, Bochner BR, Conway T, Gribskov M, Kihara D, Rudd KE, Tohsato Y, Wanner BL, Mori H.

Nucleic Acids Res. 2015 Jan;43(Database issue):D606-17. doi: 10.1093/nar/gku1164. Epub 2014 Nov 15.

11.

Analysis of aquaporin 9 expression in human epidermis and cultured keratinocytes.

Sugiyama Y, Yamazaki K, Kusaka-Kikushima A, Nakahigashi K, Hagiwara H, Miyachi Y.

FEBS Open Bio. 2014 Jun 26;4:611-6. doi: 10.1016/j.fob.2014.06.004. eCollection 2014.

12.

Prostaglandin E₂ is critical for the development of niacin-deficiency-induced photosensitivity via ROS production.

Sugita K, Ikenouchi-Sugita A, Nakayama Y, Yoshioka H, Nomura T, Sakabe J, Nakahigashi K, Kuroda E, Uematsu S, Nakamura J, Akira S, Nakamura M, Narumiya S, Miyachi Y, Tokura Y, Kabashima K.

Sci Rep. 2013 Oct 17;3:2973. doi: 10.1038/srep02973.

13.

A double dose of levocetirizine leads to better control of histamine-induced flare, wheal and itch in healthy donors.

Tanizaki H, Nakamizo S, Nakahigashi K, Miyachi Y, Kabashima K.

Pharmacology. 2013;92(1-2):71-4. doi: 10.1159/000353191. Epub 2013 Aug 7.

PMID:
23942038
14.

Digital vasculitis with eosinophilia possibly associated with etanercept therapy.

Nakahigashi K, Egawa G, Miyachi Y, Kabashima K.

Acta Derm Venereol. 2014 Mar;94(2):239-40. doi: 10.2340/00015555-1662. No abstract available.

15.

Reduction of Skin pH during Treatment for Palmoplantar Hyperhidrosis: A Conjecture on the Role of pH-Regulated Water Channel, i.e. Aquaporin.

Nakahigashi K, Nomura T, Miyachi Y, Kabashima K.

Case Rep Dermatol. 2013 Apr 18;5(1):126-8. doi: 10.1159/000348855. Print 2013 Jan.

16.

Normal immunostaining pattern for aquaporin-5 in the lesions of palmoplantar hyperhidrosis.

Nakahigashi K, Nomura T, Miyachi Y, Kabashima K.

Case Rep Dermatol. 2013 Mar 4;5(1):61-3. doi: 10.1159/000349908. Print 2013 Jan.

17.

Comparison of the efficacy of fexofenadine 120 and 240 mg/day on chronic idiopathic urticaria and histamine-induced skin responses in Japanese populations.

Tanizaki H, Nakahigashi K, Miyachi Y, Kabashima K.

J Dermatolog Treat. 2013 Dec;24(6):477-80. doi: 10.3109/09546634.2013.789472. Epub 2013 May 21.

PMID:
23534896
18.

Evaluation of basophil infiltration into the skin lesions of tick bites.

Nakahigashi K, Otsuka A, Tomari K, Miyachi Y, Kabashima K.

Case Rep Dermatol. 2013 Jan;5(1):48-51. doi: 10.1159/000348650. Epub 2013 Feb 22.

19.

The tRNA thiolation pathway modulates the intracellular redox state in Escherichia coli.

Nakayashiki T, Saito N, Takeuchi R, Kadokura H, Nakahigashi K, Wanner BL, Mori H.

J Bacteriol. 2013 May;195(9):2039-49. doi: 10.1128/JB.02180-12. Epub 2013 Mar 1.

20.

Metabolomic study of Chilean biomining bacteria Acidithiobacillus ferrooxidans strain Wenelen and Acidithiobacillus thiooxidans strain Licanantay.

Martínez P, Gálvez S, Ohtsuka N, Budinich M, Cortés MP, Serpell C, Nakahigashi K, Hirayama A, Tomita M, Soga T, Martínez S, Maass A, Parada P.

Metabolomics. 2013 Feb;9(1):247-257. Epub 2012 Jul 21.

21.
22.

Epidermal phospholipase Cδ1 regulates granulocyte counts and systemic interleukin-17 levels in mice.

Kanemaru K, Nakamura Y, Sato K, Kojima R, Takahashi S, Yamaguchi M, Ichinohe M, Kiyonari H, Shioi G, Kabashima K, Nakahigashi K, Asagiri M, Jamora C, Yamaguchi H, Fukami K.

Nat Commun. 2012 Jul 17;3:963. doi: 10.1038/ncomms1960.

PMID:
22805570
23.

Metabolic regulation analysis of wild-type and arcA mutant Escherichia coli under nitrate conditions using different levels of omics data.

Toya Y, Nakahigashi K, Tomita M, Shimizu K.

Mol Biosyst. 2012 Oct;8(10):2593-604. doi: 10.1039/c2mb25069a.

PMID:
22790675
24.

Glycogen is the primary source of glucose during the lag phase of E. coli proliferation.

Yamamotoya T, Dose H, Tian Z, Fauré A, Toya Y, Honma M, Igarashi K, Nakahigashi K, Soga T, Mori H, Matsuno H.

Biochim Biophys Acta. 2012 Dec;1824(12):1442-8. doi: 10.1016/j.bbapap.2012.06.010. Epub 2012 Jun 27.

PMID:
22750467
25.

Prostaglandin E2 increase in pachydermoperiostosis without 15-hydroprostaglandin dehydrogenase mutations.

Nakahigashi K, Otsuka A, Doi H, Tanaka S, Okajima Y, Niizeki H, Hirakiyama A, Miyachi Y, Kabashima K.

Acta Derm Venereol. 2013 Jan;93(1):118-9. doi: 10.2340/00015555-1398. No abstract available.

26.

A case of Churg-Strauss syndrome: flow cytometric analysis of the surface activation markers of peripheral eosinophils.

Nakahigashi K, Otsuka A, Miyachi Y, Kabashima K, Tanioka M.

Acta Derm Venereol. 2013 Jan;93(1):100-1. doi: 10.2340/00015555-1384. No abstract available.

27.

PGD2 induces eotaxin-3 via PPARγ from sebocytes: a possible pathogenesis of eosinophilic pustular folliculitis.

Nakahigashi K, Doi H, Otsuka A, Hirabayashi T, Murakami M, Urade Y, Zouboulis CC, Tanizaki H, Egawa G, Miyachi Y, Kabashima K.

J Allergy Clin Immunol. 2012 Feb;129(2):536-43. doi: 10.1016/j.jaci.2011.11.034. Epub 2011 Dec 28. Erratum in: J Allergy Clin Immunol. 2014 Feb;133(2):604. Zouboulis, Christos C [added].

PMID:
22206772
28.

Deep sequencing reveals as-yet-undiscovered small RNAs in Escherichia coli.

Shinhara A, Matsui M, Hiraoka K, Nomura W, Hirano R, Nakahigashi K, Tomita M, Mori H, Kanai A.

BMC Genomics. 2011 Aug 24;12:428. doi: 10.1186/1471-2164-12-428.

29.

Catabolic regulation analysis of Escherichia coli and its crp, mlc, mgsA, pgi and ptsG mutants.

Yao R, Hirose Y, Sarkar D, Nakahigashi K, Ye Q, Shimizu K.

Microb Cell Fact. 2011 Aug 11;10:67. doi: 10.1186/1475-2859-10-67.

30.

Extensive lichenoid sarcoidosis intermingled with white papules.

Nakahigashi K, Miyachi Y, Utani A.

J Dermatol. 2011 Aug;38(8):829-32. doi: 10.1111/j.1346-8138.2010.01107.x. Epub 2011 Mar 2. No abstract available.

PMID:
21366674
31.

Upregulation of aquaporin-3 is involved in keratinocyte proliferation and epidermal hyperplasia.

Nakahigashi K, Kabashima K, Ikoma A, Verkman AS, Miyachi Y, Hara-Chikuma M.

J Invest Dermatol. 2011 Apr;131(4):865-73. doi: 10.1038/jid.2010.395. Epub 2010 Dec 30.

32.

13C-metabolic flux analysis for batch culture of Escherichia coli and its Pyk and Pgi gene knockout mutants based on mass isotopomer distribution of intracellular metabolites.

Toya Y, Ishii N, Nakahigashi K, Hirasawa T, Soga T, Tomita M, Shimizu K.

Biotechnol Prog. 2010 Jul-Aug;26(4):975-92. doi: 10.1002/btpr.420.

PMID:
20730757
33.

Refractory cutaneous lichenoid sarcoidosis treated with tranilast.

Nakahigashi K, Kabashima K, Akiyama H, Utani A, Miyachi Y.

J Am Acad Dermatol. 2010 Jul;63(1):171-2. doi: 10.1016/j.jaad.2009.04.035. No abstract available.

34.

A systematic survey of in vivo obligate chaperonin-dependent substrates.

Fujiwara K, Ishihama Y, Nakahigashi K, Soga T, Taguchi H.

EMBO J. 2010 May 5;29(9):1552-64. doi: 10.1038/emboj.2010.52. Epub 2010 Apr 1.

35.

Update on the Keio collection of Escherichia coli single-gene deletion mutants.

Yamamoto N, Nakahigashi K, Nakamichi T, Yoshino M, Takai Y, Touda Y, Furubayashi A, Kinjyo S, Dose H, Hasegawa M, Datsenko KA, Nakayashiki T, Tomita M, Wanner BL, Mori H.

Mol Syst Biol. 2009;5:335. doi: 10.1038/msb.2009.92. Epub 2009 Dec 22. No abstract available.

36.

Systematic phenome analysis of Escherichia coli multiple-knockout mutants reveals hidden reactions in central carbon metabolism.

Nakahigashi K, Toya Y, Ishii N, Soga T, Hasegawa M, Watanabe H, Takai Y, Honma M, Mori H, Tomita M.

Mol Syst Biol. 2009;5:306. doi: 10.1038/msb.2009.65. Epub 2009 Sep 15.

37.

Large cell transformation mimicking regional lymphomatoid papulosis in a patient with mycosis fungoides.

Nakahigashi K, Ishida Y, Matsumura Y, Kore-Eda S, Ohmori K, Fujimoto M, Yamashita K, Kotani H, Sakurai T, Miyachi Y.

J Dermatol. 2008 May;35(5):283-8. doi: 10.1111/j.1346-8138.2008.00467.x.

PMID:
18477228
38.

Generalized papules in a patient with acute myeloid leukemia.

Nakahigashi K, Tanioka M, Miyachi Y.

Arch Dermatol. 2007 Dec;143(12):1583-8. No abstract available.

PMID:
18087015
39.

Case of AIDS disclosed by refractory pruritic xerosis and molluscum contagiosum.

Nakahigashi K, Tanioka M, Araki E, Sawatake T, Miyachi Y, Utani A.

J Dermatol. 2007 Sep;34(9):668-70. No abstract available.

PMID:
17727374
40.

Multiple high-throughput analyses monitor the response of E. coli to perturbations.

Ishii N, Nakahigashi K, Baba T, Robert M, Soga T, Kanai A, Hirasawa T, Naba M, Hirai K, Hoque A, Ho PY, Kakazu Y, Sugawara K, Igarashi S, Harada S, Masuda T, Sugiyama N, Togashi T, Hasegawa M, Takai Y, Yugi K, Arakawa K, Iwata N, Toya Y, Nakayama Y, Nishioka T, Shimizu K, Mori H, Tomita M.

Science. 2007 Apr 27;316(5824):593-7. Epub 2007 Mar 22.

41.

Late-onset self-healing reticulohistiocytosis: pediatric case of Hashimoto-Pritzker type Langerhans cell histiocytosis.

Nakahigashi K, Ohta M, Sakai R, Sugimoto Y, Ikoma Y, Horiguchi Y.

J Dermatol. 2007 Mar;34(3):205-9.

PMID:
17291304
42.

Epigenetic maintenance of the vernalized state in Arabidopsis thaliana requires LIKE HETEROCHROMATIN PROTEIN 1.

Sung S, He Y, Eshoo TW, Tamada Y, Johnson L, Nakahigashi K, Goto K, Jacobsen SE, Amasino RM.

Nat Genet. 2006 Jun;38(6):706-10. Epub 2006 May 7.

PMID:
16682972
43.

Large-scale identification of protein-protein interaction of Escherichia coli K-12.

Arifuzzaman M, Maeda M, Itoh A, Nishikata K, Takita C, Saito R, Ara T, Nakahigashi K, Huang HC, Hirai A, Tsuzuki K, Nakamura S, Altaf-Ul-Amin M, Oshima T, Baba T, Yamamoto N, Kawamura T, Ioka-Nakamichi T, Kitagawa M, Tomita M, Kanaya S, Wada C, Mori H.

Genome Res. 2006 May;16(5):686-91. Epub 2006 Apr 10.

44.

The Arabidopsis heterochromatin protein1 homolog (TERMINAL FLOWER2) silences genes within the euchromatic region but not genes positioned in heterochromatin.

Nakahigashi K, Jasencakova Z, Schubert I, Goto K.

Plant Cell Physiol. 2005 Nov;46(11):1747-56. Epub 2005 Aug 29.

PMID:
16131496
45.
46.

Cloning and sequencing a HemK-family gene in Porphyromonas gingivalis.

Kusaba A, Ansai T, Akifusa S, Nakahigashi K, Inokuchi H, Takehara T.

DNA Seq. 2003 Feb;14(1):71-4.

PMID:
12751333
47.

tRNA2Thr complements temperature sensitivity caused by null mutations in the htrB gene in Escherichia coli.

Mohri Y, Goto S, Nakahigashi K, Inokuchi H.

J Bacteriol. 2003 Mar;185(5):1726-9.

48.

Cloning and expression of a Porphyromonas gingivalis gene for protoporphyrinogen oxidase by complementation of a hemG mutant of Escherichia coli.

Kusaba A, Ansai T, Akifusa S, Nakahigashi K, Taketani S, Inokuchi H, Takehara T.

Oral Microbiol Immunol. 2002 Oct;17(5):290-5.

PMID:
12354210
49.

Heat shock proteome of Agrobacterium tumefaciens: evidence for new control systems.

Rosen R, Büttner K, Becher D, Nakahigashi K, Yura T, Hecker M, Ron EZ.

J Bacteriol. 2002 Mar;184(6):1772-8.

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