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Items: 45

1.

Fine-tuning of Approximate Bayesian Computation for human population genomics.

Cooke NP, Nakagome S.

Curr Opin Genet Dev. 2018 Jul 17;53:60-69. doi: 10.1016/j.gde.2018.06.016. [Epub ahead of print] Review.

PMID:
30029009
2.

Longitudinal Epidemiologic Study of Poor Mental Health Status in Japanese Adolescents: Incidence of Predictive Lifestyle Factors.

Itani O, Kaneita Y, Doi K, Tokiya M, Jike M, Nakagome S, Otsuka Y, Ohida T.

J Clin Psychiatry. 2018 Jul 3;79(4). pii: 17m11516. doi: 10.4088/JCP.17m11516.

PMID:
29995358
3.

Full body mobile brain-body imaging data during unconstrained locomotion on stairs, ramps, and level ground.

Brantley JA, Luu TP, Nakagome S, Zhu F, Contreras-Vidal JL.

Sci Data. 2018 Jul 10;5:180133. doi: 10.1038/sdata.2018.133.

4.

The association between sleep disturbance and second-hand smoke exposure: a large-scale, nationwide, cross-sectional study of adolescents in Japan.

Morioka H, Jike M, Kanda H, Osaki Y, Nakagome S, Otsuka Y, Kaneita Y, Itani O, Higuchi S, Ohida T.

Sleep Med. 2018 Oct;50:29-35. doi: 10.1016/j.sleep.2018.04.014. Epub 2018 Jun 1.

PMID:
29982087
5.

The prehistoric peopling of Southeast Asia.

McColl H, Racimo F, Vinner L, Demeter F, Gakuhari T, Moreno-Mayar JV, van Driem G, Gram Wilken U, Seguin-Orlando A, de la Fuente Castro C, Wasef S, Shoocongdej R, Souksavatdy V, Sayavongkhamdy T, Saidin MM, Allentoft ME, Sato T, Malaspinas AS, Aghakhanian FA, Korneliussen T, Prohaska A, Margaryan A, de Barros Damgaard P, Kaewsutthi S, Lertrit P, Nguyen TMH, Hung HC, Minh Tran T, Nghia Truong H, Nguyen GH, Shahidan S, Wiradnyana K, Matsumae H, Shigehara N, Yoneda M, Ishida H, Masuyama T, Yamada Y, Tajima A, Shibata H, Toyoda A, Hanihara T, Nakagome S, Deviese T, Bacon AM, Duringer P, Ponche JL, Shackelford L, Patole-Edoumba E, Nguyen AT, Bellina-Pryce B, Galipaud JC, Kinaston R, Buckley H, Pottier C, Rasmussen S, Higham T, Foley RA, Lahr MM, Orlando L, Sikora M, Phipps ME, Oota H, Higham C, Lambert DM, Willerslev E.

Science. 2018 Jul 6;361(6397):88-92. doi: 10.1126/science.aat3628.

PMID:
29976827
6.

Effects of speed and direction of perturbation on electroencephalographic and balance responses.

Goel R, Ozdemir RA, Nakagome S, Contreras-Vidal JL, Paloski WH, Parikh PJ.

Exp Brain Res. 2018 May 11. doi: 10.1007/s00221-018-5284-5. [Epub ahead of print]

PMID:
29752486
7.

A mobile brain-body imaging dataset recorded during treadmill walking with a brain-computer interface.

He Y, Luu TP, Nathan K, Nakagome S, Contreras-Vidal JL.

Sci Data. 2018 Apr 24;5:180074. doi: 10.1038/sdata.2018.74.

8.

Risk Factors at Birth Predictive of Subsequent Injury Among Japanese Preschool Children: A Nationwide 5-Year Cohort Study.

Morioka H, Itani O, Jike M, Nakagome S, Otsuka Y, Ohida T.

J Dev Behav Pediatr. 2018 Jun;39(5):424-433. doi: 10.1097/DBP.0000000000000558.

PMID:
29557859
9.

Factors Related to Alcohol Consumption Among Japanese Physicians.

Ohida N, Otsuka Y, Kaneita Y, Nakagome S, Jike M, Itani O, Ohida T.

Asia Pac J Public Health. 2018 Apr;30(3):296-306. doi: 10.1177/1010539518754539. Epub 2018 Feb 18.

PMID:
29457499
10.

Electrocortical correlates of human level-ground, slope, and stair walking.

Luu TP, Brantley JA, Nakagome S, Zhu F, Contreras-Vidal JL.

PLoS One. 2017 Nov 30;12(11):e0188500. doi: 10.1371/journal.pone.0188500. eCollection 2017.

11.

Deployment of Mobile EEG Technology in an Art Museum Setting: Evaluation of Signal Quality and Usability.

Cruz-Garza JG, Brantley JA, Nakagome S, Kontson K, Megjhani M, Robleto D, Contreras-Vidal JL.

Front Hum Neurosci. 2017 Nov 10;11:527. doi: 10.3389/fnhum.2017.00527. eCollection 2017.

12.

Short sleep duration, shift work, and actual days taken off work are predictive life-style risk factors for new-onset metabolic syndrome: a seven-year cohort study of 40,000 male workers.

Itani O, Kaneita Y, Tokiya M, Jike M, Murata A, Nakagome S, Otsuka Y, Ohida T.

Sleep Med. 2017 Nov;39:87-94. doi: 10.1016/j.sleep.2017.07.027. Epub 2017 Sep 9.

PMID:
29157594
13.

Relationship between stress coping and sleep disorders among the general Japanese population: a nationwide representative survey.

Otsuka Y, Kaneita Y, Itani O, Nakagome S, Jike M, Ohida T.

Sleep Med. 2017 Sep;37:38-45. doi: 10.1016/j.sleep.2017.06.007. Epub 2017 Jun 24.

PMID:
28899538
14.

Real-time EEG-based brain-computer interface to a virtual avatar enhances cortical involvement in human treadmill walking.

Luu TP, Nakagome S, He Y, Contreras-Vidal JL.

Sci Rep. 2017 Aug 21;7(1):8895. doi: 10.1038/s41598-017-09187-0.

15.

Genetics of Schizophrenia: Ready to Translate?

Foley C, Corvin A, Nakagome S.

Curr Psychiatry Rep. 2017 Sep;19(9):61. doi: 10.1007/s11920-017-0807-5. Review.

PMID:
28741255
16.

Multi-Trial Gait Adaptation of Healthy Individuals during Visual Kinematic Perturbations.

Luu TP, He Y, Nakagome S, Nathan K, Brown S, Gorges J, Contreras-Vidal JL.

Front Hum Neurosci. 2017 Jun 20;11:320. doi: 10.3389/fnhum.2017.00320. eCollection 2017.

17.

An ancestral haplotype of the human PERIOD2 gene associates with reduced sensitivity to light-induced melatonin suppression.

Akiyama T, Katsumura T, Nakagome S, Lee SI, Joh K, Soejima H, Fujimoto K, Kimura R, Ishida H, Hanihara T, Yasukouchi A, Satta Y, Higuchi S, Oota H.

PLoS One. 2017 Jun 26;12(6):e0178373. doi: 10.1371/journal.pone.0178373. eCollection 2017.

18.

Confounding effects of microbiome on the susceptibility of TNFSF15 to Crohn's disease in the Ryukyu Islands.

Nakagome S, Chinen H, Iraha A, Hokama A, Takeyama Y, Sakisaka S, Matsui T, Kidd JR, Kidd KK, Said HS, Suda W, Morita H, Hattori M, Hanihara T, Kimura R, Ishida H, Fujita J, Kinjo F, Mano S, Oota H.

Hum Genet. 2017 Apr;136(4):387-397. doi: 10.1007/s00439-017-1764-0. Epub 2017 Feb 14.

PMID:
28197769
19.

Colonic transcriptional response to 1α,25(OH)2 vitamin D3 in African- and European-Americans.

Alleyne D, Witonsky DB, Mapes B, Nakagome S, Sommars M, Hong E, Muckala KA, Di Rienzo A, Kupfer SS.

J Steroid Biochem Mol Biol. 2017 Apr;168:49-59. doi: 10.1016/j.jsbmb.2017.02.001. Epub 2017 Feb 3.

20.

The association between alcohol use and problematic internet use: A large-scale nationwide cross-sectional study of adolescents in Japan.

Morioka H, Itani O, Osaki Y, Higuchi S, Jike M, Kaneita Y, Kanda H, Nakagome S, Ohida T.

J Epidemiol. 2017 Mar;27(3):107-111. doi: 10.1016/j.je.2016.10.004. Epub 2017 Jan 17.

21.

A time transect of exomes from a Native American population before and after European contact.

Lindo J, Huerta-Sánchez E, Nakagome S, Rasmussen M, Petzelt B, Mitchell J, Cybulski JS, Willerslev E, DeGiorgio M, Malhi RS.

Nat Commun. 2016 Nov 15;7:13175. doi: 10.1038/ncomms13175.

22.

Nationwide epidemiological study of insomnia in Japan.

Itani O, Kaneita Y, Munezawa T, Mishima K, Jike M, Nakagome S, Tokiya M, Ohida T.

Sleep Med. 2016 Sep;25:130-138. doi: 10.1016/j.sleep.2016.05.013. Epub 2016 Aug 30.

PMID:
27823706
23.

Association Between Smoking and Problematic Internet Use Among Japanese Adolescents: Large-Scale Nationwide Epidemiological Study.

Morioka H, Itani O, Osaki Y, Higuchi S, Jike M, Kaneita Y, Kanda H, Nakagome S, Ohida T.

Cyberpsychol Behav Soc Netw. 2016 Sep;19(9):557-61. doi: 10.1089/cyber.2016.0182.

PMID:
27635442
24.

Anger and Impulsivity Among Japanese Adolescents: A Nationwide Representative Survey.

Itani O, Kaneita Y, Munezawa T, Ikeda M, Osaki Y, Higuchi S, Kanda H, Nakagome S, Suzuki K, Ohida T.

J Clin Psychiatry. 2016 Jul;77(7):e860-6. doi: 10.4088/JCP.15m10044.

PMID:
27464319
25.

Mapping Variation in Cellular and Transcriptional Response to 1,25-Dihydroxyvitamin D3 in Peripheral Blood Mononuclear Cells.

Kariuki SN, Maranville JC, Baxter SS, Jeong C, Nakagome S, Hrusch CL, Witonsky DB, Sperling AI, Di Rienzo A.

PLoS One. 2016 Jul 25;11(7):e0159779. doi: 10.1371/journal.pone.0159779. eCollection 2016.

26.

Powered exoskeletons for bipedal locomotion after spinal cord injury.

Contreras-Vidal JL, A Bhagat N, Brantley J, Cruz-Garza JG, He Y, Manley Q, Nakagome S, Nathan K, Tan SH, Zhu F, Pons JL.

J Neural Eng. 2016 Jun;13(3):031001. doi: 10.1088/1741-2560/13/3/031001. Epub 2016 Apr 11.

PMID:
27064508
27.

Patterns of Transcriptional Response to 1,25-Dihydroxyvitamin D3 and Bacterial Lipopolysaccharide in Primary Human Monocytes.

Kariuki SN, Blischak JD, Nakagome S, Witonsky DB, Di Rienzo A.

G3 (Bethesda). 2016 May 3;6(5):1345-55. doi: 10.1534/g3.116.028712.

28.

Your Brain on Art: Emergent Cortical Dynamics During Aesthetic Experiences.

Kontson KL, Megjhani M, Brantley JA, Cruz-Garza JG, Nakagome S, Robleto D, White M, Civillico E, Contreras-Vidal JL.

Front Hum Neurosci. 2015 Nov 18;9:626. doi: 10.3389/fnhum.2015.00626. eCollection 2015. Erratum in: Front Hum Neurosci. 2015;9:684.

29.

Estimating the Ages of Selection Signals from Different Epochs in Human History.

Nakagome S, Alkorta-Aranburu G, Amato R, Howie B, Peter BM, Hudson RR, Di Rienzo A.

Mol Biol Evol. 2016 Mar;33(3):657-69. doi: 10.1093/molbev/msv256. Epub 2015 Nov 5.

30.

On the use of kernel approximate Bayesian computation to infer population history.

Nakagome S.

Genes Genet Syst. 2015;90(3):153-62. doi: 10.1266/ggs.90.153. Review.

31.

Deep History of East Asian Populations Revealed Through Genetic Analysis of the Ainu.

Jeong C, Nakagome S, Di Rienzo A.

Genetics. 2016 Jan;202(1):261-72. doi: 10.1534/genetics.115.178673. Epub 2015 Oct 23.

32.

A Closed-loop Brain Computer Interface to a Virtual Reality Avatar: Gait Adaptation to Visual Kinematic Perturbations.

Luu TP, He Y, Brown S, Nakagome S, Contreras-Vidal JL.

Int Conf Virtual Rehabil. 2015 Jun;2015:30-37. Epub 2015 Dec 17.

33.

Model-based verification of hypotheses on the origin of modern Japanese revisited by Bayesian inference based on genome-wide SNP data.

Nakagome S, Sato T, Ishida H, Hanihara T, Yamaguchi T, Kimura R, Mano S, Oota H; Asian DNA Repository Consortium.

Mol Biol Evol. 2015 Jun;32(6):1533-43. doi: 10.1093/molbev/msv045. Epub 2015 Mar 10.

PMID:
25758010
34.

Natural allelic variations of xenobiotic-metabolizing enzymes affect sexual dimorphism in Oryzias latipes.

Katsumura T, Oda S, Nakagome S, Hanihara T, Kataoka H, Mitani H, Kawamura S, Oota H.

Proc Biol Sci. 2014 Dec 22;281(1797). pii: 20142259. doi: 10.1098/rspb.2014.2259.

35.

Factors affecting unhappiness at school among Japanese adolescents: an epidemiological study.

Morioka H, Itani O, Kaneita Y, Iwasa H, Ikeda M, Yamamoto R, Osaki Y, Kanda H, Nakagome S, Ohida T.

PLoS One. 2014 Nov 4;9(11):e111844. doi: 10.1371/journal.pone.0111844. eCollection 2014.

36.

Genome-wide SNP analysis reveals population structure and demographic history of the ryukyu islanders in the southern part of the Japanese archipelago.

Sato T, Nakagome S, Watanabe C, Yamaguchi K, Kawaguchi A, Koganebuchi K, Haneji K, Yamaguchi T, Hanihara T, Yamamoto K, Ishida H, Mano S, Kimura R, Oota H.

Mol Biol Evol. 2014 Nov;31(11):2929-40. doi: 10.1093/molbev/msu230. Epub 2014 Aug 1.

PMID:
25086001
37.

Ancestral polymorphisms and sex-biased migration shaped the demographic history of brown bears and polar bears.

Nakagome S, Mano S, Hasegawa M.

PLoS One. 2013 Nov 13;8(11):e78813. doi: 10.1371/journal.pone.0078813. eCollection 2013.

38.

Kernel approximate Bayesian computation in population genetic inferences.

Nakagome S, Fukumizu K, Mano S.

Stat Appl Genet Mol Biol. 2013 Dec;12(6):667-78. doi: 10.1515/sagmb-2012-0050.

PMID:
24150124
39.

Finding the factors of reduced genetic diversity on X chromosomes of Macaca fascicularis: male-driven evolution, demography, and natural selection.

Osada N, Nakagome S, Mano S, Kameoka Y, Takahashi I, Terao K.

Genetics. 2013 Nov;195(3):1027-35. doi: 10.1534/genetics.113.156703. Epub 2013 Sep 11.

40.

Dysbiosis of salivary microbiota in inflammatory bowel disease and its association with oral immunological biomarkers.

Said HS, Suda W, Nakagome S, Chinen H, Oshima K, Kim S, Kimura R, Iraha A, Ishida H, Fujita J, Mano S, Morita H, Dohi T, Oota H, Hattori M.

DNA Res. 2014 Feb;21(1):15-25. doi: 10.1093/dnares/dst037. Epub 2013 Sep 7.

41.

Biogeography revealed by mariner-like transposable element sequences via a Bayesian coalescent approach.

Nakagome S, Nakajima Y, Mano S.

J Mol Evol. 2013 Sep;77(3):64-9. doi: 10.1007/s00239-013-9581-0. Epub 2013 Aug 30.

PMID:
23989494
42.

Comment on "Nuclear genomic sequences reveal that polar bears are an old and distinct bear lineage".

Nakagome S, Mano S, Hasegawa M.

Science. 2013 Mar 29;339(6127):1522. doi: 10.1126/science.1227339.

PMID:
23539580
43.

Crohn's disease risk alleles on the NOD2 locus have been maintained by natural selection on standing variation.

Nakagome S, Mano S, Kozlowski L, Bujnicki JM, Shibata H, Fukumaki Y, Kidd JR, Kidd KK, Kawamura S, Oota H.

Mol Biol Evol. 2012 Jun;29(6):1569-85. doi: 10.1093/molbev/mss006. Epub 2012 Jan 12.

44.

Population-specific susceptibility to Crohn's disease and ulcerative colitis; dominant and recessive relative risks in the Japanese population.

Nakagome S, Takeyama Y, Mano S, Sakisaka S, Matsui T, Kawamura S, Oota H.

Ann Hum Genet. 2010 Mar;74(2):126-36. doi: 10.1111/j.1469-1809.2010.00567.x.

45.

Unequal rates of Y chromosome gene divergence during speciation of the family Ursidae.

Nakagome S, Pecon-Slattery J, Masuda R.

Mol Biol Evol. 2008 Jul;25(7):1344-56. doi: 10.1093/molbev/msn086. Epub 2008 Apr 9.

PMID:
18400788

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