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Items: 28

1.

Network-guided analysis of hippocampal proteome identifies novel proteins that colocalize with Aβ in a mice model of early-stage Alzheimer's disease.

Aladeokin AC, Akiyama T, Kimura A, Kimura Y, Takahashi-Jitsuki A, Nakamura H, Makihara H, Masukawa D, Nakabayashi J, Hirano H, Nakamura F, Saito T, Saido T, Goshima Y.

Neurobiol Dis. 2019 Dec;132:104603. doi: 10.1016/j.nbd.2019.104603. Epub 2019 Sep 5.

PMID:
31494281
2.

Epigenetic control of early dendritic cell lineage specification by the transcription factor IRF8 in mice.

Kurotaki D, Kawase W, Sasaki H, Nakabayashi J, Nishiyama A, Morse HC 3rd, Ozato K, Suzuki Y, Tamura T.

Blood. 2019 Apr 25;133(17):1803-1813. doi: 10.1182/blood-2018-06-857789. Epub 2019 Feb 22.

PMID:
30796024
3.

Kmt2b conveys monovalent and bivalent H3K4me3 in mouse spermatogonial stem cells at germline and embryonic promoters.

Tomizawa SI, Kobayashi Y, Shirakawa T, Watanabe K, Mizoguchi K, Hoshi I, Nakajima K, Nakabayashi J, Singh S, Dahl A, Alexopoulou D, Seki M, Suzuki Y, Royo H, Peters AHFM, Anastassiadis K, Stewart AF, Ohbo K.

Development. 2018 Nov 30;145(23). pii: dev169102. doi: 10.1242/dev.169102.

4.

Proteome and behavioral alterations in phosphorylation-deficient mutant Collapsin Response Mediator Protein2 knock-in mice.

Nakamura H, Takahashi-Jitsuki A, Makihara H, Asano T, Kimura Y, Nakabayashi J, Yamashita N, Kawamoto Y, Nakamura F, Ohshima T, Hirano H, Tanaka F, Goshima Y.

Neurochem Int. 2018 Oct;119:207-217. doi: 10.1016/j.neuint.2018.04.009. Epub 2018 May 11.

PMID:
29758318
5.

Transcription Factor IRF8 Governs Enhancer Landscape Dynamics in Mononuclear Phagocyte Progenitors.

Kurotaki D, Nakabayashi J, Nishiyama A, Sasaki H, Kawase W, Kaneko N, Ochiai K, Igarashi K, Ozato K, Suzuki Y, Tamura T.

Cell Rep. 2018 Mar 6;22(10):2628-2641. doi: 10.1016/j.celrep.2018.02.048.

6.

Genome-wide DNA methylation profiling identifies primary central nervous system lymphoma as a distinct entity different from systemic diffuse large B-cell lymphoma.

Nakamura T, Yamashita S, Fukumura K, Nakabayashi J, Tanaka K, Tamura K, Tateishi K, Kinoshita M, Fukushima S, Takami H, Fukuoka K, Yamazaki K, Matsushita Y, Ohno M, Miyakita Y, Shibui S, Kubo A, Shuto T, Kocialkowski S, Yamanaka S, Mukasa A, Sasayama T, Mishima K, Maehara T, Kawahara N, Nagane M, Narita Y, Mano H, Ushijima T, Ichimura K.

Acta Neuropathol. 2017 Feb;133(2):321-324. doi: 10.1007/s00401-016-1664-8. Epub 2017 Jan 5. No abstract available.

PMID:
28058506
7.

The intracellular dynamics of hepatitis B virus (HBV) replication with reproduced virion "re-cycling".

Nakabayashi J.

J Theor Biol. 2016 May 7;396:154-62. doi: 10.1016/j.jtbi.2016.02.008. Epub 2016 Feb 26.

PMID:
26924390
8.

N-Myristoylation of the Rpt2 subunit of the yeast 26S proteasome is implicated in the subcellular compartment-specific protein quality control system.

Kimura A, Kurata Y, Nakabayashi J, Kagawa H, Hirano H.

J Proteomics. 2016 Jan 1;130:33-41. doi: 10.1016/j.jprot.2015.08.021. Epub 2015 Sep 4.

PMID:
26344132
9.

The transcription factor IRF8 counteracts BCR-ABL to rescue dendritic cell development in chronic myelogenous leukemia.

Watanabe T, Hotta C, Koizumi S, Miyashita K, Nakabayashi J, Kurotaki D, Sato GR, Yamamoto M, Nakazawa M, Fujita H, Sakai R, Fujisawa S, Nishiyama A, Ikezawa Z, Aihara M, Ishigatsubo Y, Tamura T.

Cancer Res. 2013 Nov 15;73(22):6642-53. doi: 10.1158/0008-5472.CAN-13-0802.

10.

Essential role of the IRF8-KLF4 transcription factor cascade in murine monocyte differentiation.

Kurotaki D, Osato N, Nishiyama A, Yamamoto M, Ban T, Sato H, Nakabayashi J, Umehara M, Miyake N, Matsumoto N, Nakazawa M, Ozato K, Tamura T.

Blood. 2013 Mar 7;121(10):1839-49. doi: 10.1182/blood-2012-06-437863. Epub 2013 Jan 14.

11.

In vivo imaging of hierarchical spatiotemporal activation of caspase-8 during apoptosis.

Kominami K, Nagai T, Sawasaki T, Tsujimura Y, Yashima K, Sunaga Y, Tsuchimochi M, Nishimura J, Chiba K, Nakabayashi J, Koyamada K, Endo Y, Yokota H, Miyawaki A, Manabe N, Sakamaki K.

PLoS One. 2012;7(11):e50218. doi: 10.1371/journal.pone.0050218. Epub 2012 Nov 21.

12.

The molecular mechanism of apoptosis upon caspase-8 activation: quantitative experimental validation of a mathematical model.

Kominami K, Nakabayashi J, Nagai T, Tsujimura Y, Chiba K, Kimura H, Miyawaki A, Sawasaki T, Yokota H, Manabe N, Sakamaki K.

Biochim Biophys Acta. 2012 Oct;1823(10):1825-40. doi: 10.1016/j.bbamcr.2012.07.003. Epub 2012 Jul 16.

13.

Neuroprotective effect of small interfering RNA targeted to caspase-3 on rat retinal ganglion cell loss induced by ischemia and reperfusion injury.

Ishikawa S, Hirata A, Nakabayashi J, Iwakiri R, Okinami S.

Curr Eye Res. 2012 Oct;37(10):907-13. doi: 10.3109/02713683.2012.688161. Epub 2012 May 29.

PMID:
22642649
14.
15.

A compartmentalization model of hepatitis C virus replication: an appropriate distribution of HCV RNA for the effective replication.

Nakabayashi J.

J Theor Biol. 2012 May 7;300:110-7. doi: 10.1016/j.jtbi.2012.01.023. Epub 2012 Jan 23.

PMID:
22286015
16.

A mathematical model of the intracellular replication and within host evolution of hepatitis type B virus: Understanding the long time course of chronic hepatitis.

Nakabayashi J, Sasaki A.

J Theor Biol. 2011 Jan 21;269(1):318-29. doi: 10.1016/j.jtbi.2010.10.024. Epub 2010 Nov 9.

PMID:
21070786
17.

The function of temporally ordered viral gene expression in the intracellular replication of herpes simplex virus type 1 (HSV-1).

Nakabayashi J, Sasaki A.

J Theor Biol. 2009 Nov 7;261(1):156-64. doi: 10.1016/j.jtbi.2009.07.035. Epub 2009 Aug 4.

PMID:
19660477
18.

A mathematical model of the stoichiometric control of Smad complex formation in TGF-beta signal transduction pathway.

Nakabayashi J, Sasaki A.

J Theor Biol. 2009 Jul 21;259(2):389-403. doi: 10.1016/j.jtbi.2009.03.036. Epub 2009 Apr 7.

PMID:
19358856
19.

Band-selective filter in a zigzag graphene nanoribbon.

Nakabayashi J, Yamamoto D, Kurihara S.

Phys Rev Lett. 2009 Feb 13;102(6):066803. Epub 2009 Feb 10.

PMID:
19257619
20.

A mathematical model for apoptosome assembly: the optimal cytochrome c/Apaf-1 ratio.

Nakabayashi J, Sasaki A.

J Theor Biol. 2006 Sep 21;242(2):280-7. Epub 2006 May 2.

PMID:
16650876
21.

Optimal phosphorylation step number of intracellular signal-transduction pathway.

Nakabayashi J, Sasaki A.

J Theor Biol. 2005 Apr 7;233(3):413-21. Epub 2004 Dec 15.

PMID:
15652149
22.

The prickle-related gene in vertebrates is essential for gastrulation cell movements.

Takeuchi M, Nakabayashi J, Sakaguchi T, Yamamoto TS, Takahashi H, Takeda H, Ueno N.

Curr Biol. 2003 Apr 15;13(8):674-9.

23.

Visualization of endogenous BMP signaling during Xenopus development.

Kurata T, Nakabayashi J, Yamamoto TS, Mochii M, Ueno N.

Differentiation. 2001 Feb;67(1-2):33-40.

PMID:
11270121
24.

Role of blood vessels in producing pathological changes in the brain with Alzheimer's disease.

Miyakawa T, Kimura T, Hirata S, Fujise N, Ono T, Ishizuka K, Nakabayashi J.

Ann N Y Acad Sci. 2000 Apr;903:46-54.

PMID:
10818488
25.

Functional equivalency between Otx2 and Otx1 in development of the rostral head.

Suda Y, Nakabayashi J, Matsuo I, Aizawa S.

Development. 1999 Feb;126(4):743-57.

26.

Amyloid beta-protein (A beta) accumulation in the putamen and mammillary body during aging and in Alzheimer disease.

Nakabayashi J, Yoshimura M, Morishima-Kawashima M, Funato H, Miyakawa T, Yamazaki T, Ihara Y.

J Neuropathol Exp Neurol. 1998 Apr;57(4):343-52.

PMID:
9600228
27.

A critical view of presbyopic add determination.

Hanlon SD, Nakabayashi J, Shigezawa G.

J Am Optom Assoc. 1987 Jun;58(6):468-72.

PMID:
3624744
28.

The lethal protein from Kintoki beans (Phaseolus vulgaris) identified as a lectin.

Miyoshi M, Nakabayashi J, Hara T, Yawata T, Tsukamoto I, Hamaguchi Y.

J Nutr Sci Vitaminol (Tokyo). 1982;28(3):255-64.

PMID:
7131101

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