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Items: 27

1.

Expression of different ParE toxins results in conserved phenotypes with distinguishable classes of toxicity.

Ames JR, Muthuramalingam M, Murphy T, Najar FZ, Bourne CR.

Microbiologyopen. 2019 Jul 16:e902. doi: 10.1002/mbo3.902. [Epub ahead of print]

PMID:
31309747
2.

Conserved DNA motifs in the type II-A CRISPR leader region.

Van Orden MJ, Klein P, Babu K, Najar FZ, Rajan R.

PeerJ. 2017 Apr 4;5:e3161. doi: 10.7717/peerj.3161. eCollection 2017.

3.

Crystal structures of two nitroreductases from hypervirulent Clostridium difficile and functionally related interactions with the antibiotic metronidazole.

Wang B, Powell SM, Hessami N, Najar FZ, Thomas LM, Karr EA, West AH, Richter-Addo GB.

Nitric Oxide. 2016 Nov 30;60:32-39. doi: 10.1016/j.niox.2016.09.003. Epub 2016 Sep 10.

4.

Metatranscriptomic analysis of a high-sulfide aquatic spring reveals insights into sulfur cycling and unexpected aerobic metabolism.

Spain AM, Elshahed MS, Najar FZ, Krumholz LR.

PeerJ. 2015 Sep 22;3:e1259. doi: 10.7717/peerj.1259. eCollection 2015.

5.

Dynamics of an experimental microbial invasion.

Acosta F, Zamor RM, Najar FZ, Roe BA, Hambright KD.

Proc Natl Acad Sci U S A. 2015 Sep 15;112(37):11594-9. doi: 10.1073/pnas.1505204112. Epub 2015 Aug 31.

6.

Coral-zooxanthellae meta-transcriptomics reveals integrated response to pollutant stress.

Gust KA, Najar FZ, Habib T, Lotufo GR, Piggot AM, Fouke BW, Laird JG, Wilbanks MS, Rawat A, Indest KJ, Roe BA, Perkins EJ.

BMC Genomics. 2014 Jul 12;15:591. doi: 10.1186/1471-2164-15-591.

7.

Seasonality and disturbance: annual pattern and response of the bacterial and microbial eukaryotic assemblages in a freshwater ecosystem.

Jones AC, Liao TS, Najar FZ, Roe BA, Hambright KD, Caron DA.

Environ Microbiol. 2013 Sep;15(9):2557-72. doi: 10.1111/1462-2920.12151. Epub 2013 Jun 10.

PMID:
23750973
8.

The genome of the anaerobic fungus Orpinomyces sp. strain C1A reveals the unique evolutionary history of a remarkable plant biomass degrader.

Youssef NH, Couger MB, Struchtemeyer CG, Liggenstoffer AS, Prade RA, Najar FZ, Atiyeh HK, Wilkins MR, Elshahed MS.

Appl Environ Microbiol. 2013 Aug;79(15):4620-34. doi: 10.1128/AEM.00821-13. Epub 2013 May 24.

9.

The Medicago genome provides insight into the evolution of rhizobial symbioses.

Young ND, Debellé F, Oldroyd GE, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KF, Gouzy J, Schoof H, Van de Peer Y, Proost S, Cook DR, Meyers BC, Spannagl M, Cheung F, De Mita S, Krishnakumar V, Gundlach H, Zhou S, Mudge J, Bharti AK, Murray JD, Naoumkina MA, Rosen B, Silverstein KA, Tang H, Rombauts S, Zhao PX, Zhou P, Barbe V, Bardou P, Bechner M, Bellec A, Berger A, Bergès H, Bidwell S, Bisseling T, Choisne N, Couloux A, Denny R, Deshpande S, Dai X, Doyle JJ, Dudez AM, Farmer AD, Fouteau S, Franken C, Gibelin C, Gish J, Goldstein S, González AJ, Green PJ, Hallab A, Hartog M, Hua A, Humphray SJ, Jeong DH, Jing Y, Jöcker A, Kenton SM, Kim DJ, Klee K, Lai H, Lang C, Lin S, Macmil SL, Magdelenat G, Matthews L, McCorrison J, Monaghan EL, Mun JH, Najar FZ, Nicholson C, Noirot C, O'Bleness M, Paule CR, Poulain J, Prion F, Qin B, Qu C, Retzel EF, Riddle C, Sallet E, Samain S, Samson N, Sanders I, Saurat O, Scarpelli C, Schiex T, Segurens B, Severin AJ, Sherrier DJ, Shi R, Sims S, Singer SR, Sinharoy S, Sterck L, Viollet A, Wang BB, Wang K, Wang M, Wang X, Warfsmann J, Weissenbach J, White DD, White JD, Wiley GB, Wincker P, Xing Y, Yang L, Yao Z, Ying F, Zhai J, Zhou L, Zuber A, Dénarié J, Dixon RA, May GD, Schwartz DC, Rogers J, Quétier F, Town CD, Roe BA.

Nature. 2011 Nov 16;480(7378):520-4. doi: 10.1038/nature10625.

10.

Rumen microbial population dynamics during adaptation to a high-grain diet.

Fernando SC, Purvis HT 2nd, Najar FZ, Sukharnikov LO, Krehbiel CR, Nagaraja TG, Roe BA, Desilva U.

Appl Environ Microbiol. 2010 Nov;76(22):7482-90. doi: 10.1128/AEM.00388-10. Epub 2010 Sep 17.

11.

A novel conjugative plasmid from Enterococcus faecalis E99 enhances resistance to ultraviolet radiation.

Coburn PS, Baghdayan AS, Craig N, Burroughs A, Tendolkar P, Miller K, Najar FZ, Roe BA, Shankar N.

Plasmid. 2010 Jul;64(1):18-25. doi: 10.1016/j.plasmid.2010.03.001. Epub 2010 Mar 20.

12.

Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys.

Youssef N, Sheik CS, Krumholz LR, Najar FZ, Roe BA, Elshahed MS.

Appl Environ Microbiol. 2009 Aug;75(16):5227-36. doi: 10.1128/AEM.00592-09. Epub 2009 Jun 26.

13.

Chemical induction of silent biosynthetic pathway transcription in Aspergillus niger.

Fisch KM, Gillaspy AF, Gipson M, Henrikson JC, Hoover AR, Jackson L, Najar FZ, Wägele H, Cichewicz RH.

J Ind Microbiol Biotechnol. 2009 Sep;36(9):1199-213. doi: 10.1007/s10295-009-0601-4. Epub 2009 Jun 12.

PMID:
19521728
14.

Novelty and uniqueness patterns of rare members of the soil biosphere.

Elshahed MS, Youssef NH, Spain AM, Sheik C, Najar FZ, Sukharnikov LO, Roe BA, Davis JP, Schloss PD, Bailey VL, Krumholz LR.

Appl Environ Microbiol. 2008 Sep;74(17):5422-8. doi: 10.1128/AEM.00410-08. Epub 2008 Jul 7.

15.

The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571.

Lee KB, De Backer P, Aono T, Liu CT, Suzuki S, Suzuki T, Kaneko T, Yamada M, Tabata S, Kupfer DM, Najar FZ, Wiley GB, Roe B, Binnewies TT, Ussery DW, D'Haeze W, Herder JD, Gevers D, Vereecke D, Holsters M, Oyaizu H.

BMC Genomics. 2008 Jun 4;9:271. doi: 10.1186/1471-2164-9-271.

16.

Identification and isolation of a Castellaniella species important during biostimulation of an acidic nitrate- and uranium-contaminated aquifer.

Spain AM, Peacock AD, Istok JD, Elshahed MS, Najar FZ, Roe BA, White DC, Krumholz LR.

Appl Environ Microbiol. 2007 Aug;73(15):4892-904. Epub 2007 Jun 8.

17.

Phylogenetic and metabolic diversity of Planctomycetes from anaerobic, sulfide- and sulfur-rich Zodletone Spring, Oklahoma.

Elshahed MS, Youssef NH, Luo Q, Najar FZ, Roe BA, Sisk TM, Bühring SI, Hinrichs KU, Krumholz LR.

Appl Environ Microbiol. 2007 Aug;73(15):4707-16. Epub 2007 Jun 1.

18.

FepA- and TonB-dependent bacteriophage H8: receptor binding and genomic sequence.

Rabsch W, Ma L, Wiley G, Najar FZ, Kaserer W, Schuerch DW, Klebba JE, Roe BA, Laverde Gomez JA, Schallmey M, Newton SM, Klebba PE.

J Bacteriol. 2007 Aug;189(15):5658-74. Epub 2007 May 25.

19.

Porcine kallikrein gene family: genomic structure, mapping, and differential expression analysis.

Fernando SC, Najar FZ, Guo X, Zhou L, Fu Y, Geisert RD, Roe BA, DeSilva U.

Genomics. 2007 Mar;89(3):429-38. Epub 2007 Jan 8.

20.

Genomic comparison of plant pathogenic and nonpathogenic Serratia marcescens strains by suppressive subtractive hybridization.

Zhang Q, Melcher U, Zhou L, Najar FZ, Roe BA, Fletcher J.

Appl Environ Microbiol. 2005 Dec;71(12):7716-23.

21.

Metagenomic analysis of the microbial community at Zodletone Spring (Oklahoma): insights into the genome of a member of the novel candidate division OD1.

Elshahed MS, Najar FZ, Aycock M, Qu C, Roe BA, Krumholz LR.

Appl Environ Microbiol. 2005 Nov;71(11):7598-602.

22.

Diversity of the microeukaryotic community in sulfide-rich Zodletone Spring (Oklahoma).

Luo Q, Krumholz LR, Najar FZ, Peacock AD, Roe BA, White DC, Elshahed MS.

Appl Environ Microbiol. 2005 Oct;71(10):6175-84.

23.

Survey of archaeal diversity reveals an abundance of halophilic Archaea in a low-salt, sulfide- and sulfur-rich spring.

Elshahed MS, Najar FZ, Roe BA, Oren A, Dewers TA, Krumholz LR.

Appl Environ Microbiol. 2004 Apr;70(4):2230-9.

24.

Allelic variants of ovine prion protein gene (PRNP) in Oklahoma sheep.

DeSilva U, Guo X, Kupfer DM, Fernando SC, Pillai AT, Najar FZ, So S, Fitch GQ, Roe BA.

Cytogenet Genome Res. 2003;102(1-4):89-94.

PMID:
14970685
25.

Bacterial diversity and sulfur cycling in a mesophilic sulfide-rich spring.

Elshahed MS, Senko JM, Najar FZ, Kenton SM, Roe BA, Dewers TA, Spear JR, Krumholz LR.

Appl Environ Microbiol. 2003 Sep;69(9):5609-21.

26.

Gene content and organization of an 85-kb DNA segment from the genome of the phytopathogenic mollicute Spiroplasma kunkelii.

Zhao Y, Hammond RW, Jomantiene R, Dally EL, Lee IM, Jia H, Wu H, Lin S, Zhang P, Kenton S, Najar FZ, Hua A, Roe BA, Fletcher J, Davis RE.

Mol Genet Genomics. 2003 Aug;269(5):592-602. Epub 2003 Jul 4.

PMID:
12845528
27.

Complete genome sequence of an M1 strain of Streptococcus pyogenes.

Ferretti JJ, McShan WM, Ajdic D, Savic DJ, Savic G, Lyon K, Primeaux C, Sezate S, Suvorov AN, Kenton S, Lai HS, Lin SP, Qian Y, Jia HG, Najar FZ, Ren Q, Zhu H, Song L, White J, Yuan X, Clifton SW, Roe BA, McLaughlin R.

Proc Natl Acad Sci U S A. 2001 Apr 10;98(8):4658-63.

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