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Enhanced Carrier Screening for Spinal Muscular Atrophy: Detection of Silent (SMN1: 2 + 0) Carriers Utilizing a Novel TaqMan Genotyping Method.

Azad AK, Huang CK, Jin H, Zou H, Yanakakis L, Du J, Fiddler M, Naeem R, Goldstein Y.

Lab Med. 2019 Dec 26. pii: lmz088. doi: 10.1093/labmed/lmz088. [Epub ahead of print]


Incidence of Vitamin D Deficiency in Different Seasons in the Adult Karachi Population Presenting in the Medical Outpatient Department with Generalized Body Ache.

Raza A, Syed JG, Muhammad Ali F, Danish Khan M, Ali Khan M, Haleem F, Naeem R.

Cureus. 2019 Jul 18;11(7):e5167. doi: 10.7759/cureus.5167.


Nerve Sheath Myxoma of Scalp: A Rare Site of Presentation.

Yadav SK, Singh S, Sarin N, Naeem R, Pruthi SK.

Int J Trichology. 2019 Jan-Feb;11(1):34-37. doi: 10.4103/ijt.ijt_45_18.


Antihypernociceptive and neuroprotective effects of Combretin A and Combretin B on streptozotocin-induced diabetic neuropathy in mice.

Mbiantcha M, Khalid R, Dawe A, Mehreen A, Atsamo DA, Ateufack G, Hamza D, Nana WY, Bomba FTD, Naeem RU, Izhar A.

Naunyn Schmiedebergs Arch Pharmacol. 2019 Jun;392(6):697-713. doi: 10.1007/s00210-019-01626-1. Epub 2019 Feb 13.


Integrated transcriptomic and proteomic analysis of pathogenic mycobacteria and their esx-1 mutants reveal secretion-dependent regulation of ESX-1 substrates and WhiB6 as a transcriptional regulator.

Abdallah AM, Weerdenburg EM, Guan Q, Ummels R, Borggreve S, Adroub SA, Malas TB, Naeem R, Zhang H, Otto TD, Bitter W, Pain A.

PLoS One. 2019 Jan 23;14(1):e0211003. doi: 10.1371/journal.pone.0211003. eCollection 2019.


Child abuse in Pakistan: A qualitative study of knowledge, attitudes and practice amongst health professionals.

Maul KM, Naeem R, Rahim Khan U, Mian AI, Yousafzai AK, Brown N.

Child Abuse Negl. 2019 Feb;88:51-57. doi: 10.1016/j.chiabu.2018.10.008. Epub 2018 Nov 14.


The clinical respiratory score predicts paediatric critical care disposition in children with respiratory distress presenting to the emergency department.

Nayani K, Naeem R, Munir O, Naseer N, Feroze A, Brown N, Mian AI.

BMC Pediatr. 2018 Oct 30;18(1):339. doi: 10.1186/s12887-018-1317-2.


Antimicrobial and antiurease potential of Diorganotin(IV) Schiff bases.

Khan SA, Naeem R, Hussain S, Ali S, Muhammad N, Hussain Z, Shujah S.

Pak J Pharm Sci. 2018 Jul;31(4):1399-1405.


Occupational exposure to HIV in a developing country: assessing knowledge and attitude of healthcare professional before and after an awareness symposium.

Ismail S, Awan S, Naeem R, Siddiqui S, Afzal B, Jamil B, Khan UR.

BMC Res Notes. 2018 Feb 15;11(1):131. doi: 10.1186/s13104-018-3231-y.


Teaching children road safety through storybooks: an approach to child health literacy in Pakistan.

Ahmad H, Naeem R, Feroze A, Zia N, Shakoor A, Khan UR, Mian AI.

BMC Pediatr. 2018 Feb 7;18(1):31. doi: 10.1186/s12887-018-0982-5.


Impact of health literacy on diabetes outcomes: a cross-sectional study from Lahore, Pakistan.

Saeed H, Saleem Z, Naeem R, Shahzadi I, Islam M.

Public Health. 2018 Mar;156:8-14. doi: 10.1016/j.puhe.2017.12.005. Epub 2018 Jan 30.


Factors behind not using child restrain(t) among hospital employees and general population: A case control study.

Siddiqui E, Afzal B, Kazi G, Feroz A, Naeem R, Mansoor T, Allana A, Siddiqui S, Siddiqui Z.

World J Emerg Med. 2017;8(4):269-275. doi: 10.5847/wjem.j.1920-8642.2017.04.004.


Enteric Infections Circulating during Hajj Seasons, 2011-2013.

Abd El Ghany M, Alsomali M, Almasri M, Padron Regalado E, Naeem R, Tukestani A, Asiri A, Hill-Cawthorne GA, Pain A, Memish ZA.

Emerg Infect Dis. 2017 Oct;23(10). doi: 10.3201/eid2310.161642.


The ATHENA HPV study underrepresents "other" high-risk HPV genotypes when compared with a diverse New York City population.

Ramos Rivera G, Khader SN, Lajara S, Schlesinger K, Goldstein DY, Naeem RC, Suhrland MJ, Fox AS.

Cytopathology. 2017 Oct;28(5):413-418. doi: 10.1111/cyt.12440. Epub 2017 Jul 21.


SurePath Specimens Versus ThinPrep Specimen Types on the COBAS 4800 Platform: High-Risk HPV Status and Cytology Correlation in an Ethnically Diverse Bronx Population.

Naeem RC, Goldstein DY, Einstein MH, Ramos Rivera G, Schlesinger K, Khader SN, Suhrland M, Fox AS.

Lab Med. 2017 Aug 1;48(3):207-213. doi: 10.1093/labmed/lmx019.


The value of manipulation of displaced distal radius fractures in the emergency department.

Jordan RW, Naeem R, Jadoon S, Srinivas K, Shyamalan G.

Acta Orthop Belg. 2016 Aug;82(2):203-209.


Candidate Essential Genes in Burkholderia cenocepacia J2315 Identified by Genome-Wide TraDIS.

Wong YC, Abd El Ghany M, Naeem R, Lee KW, Tan YC, Pain A, Nathan S.

Front Microbiol. 2016 Aug 22;7:1288. doi: 10.3389/fmicb.2016.01288. eCollection 2016.


Fabrication of pristine Mn2O3 and Ag-Mn2O3 composite thin films by AACVD for photoelectrochemical water splitting.

Naeem R, Ali Ehsan M, Yahya R, Sohail M, Khaledi H, Mazhar M.

Dalton Trans. 2016 Oct 14;45(38):14928-39. doi: 10.1039/c6dt02656g. Epub 2016 Aug 23.


Cast Immobilisation versus Wire Fixation in the Management of Middle-aged and Elderly Patients with Distal Radius Fractures.

Jordan RW, Naeem R, Jadoon S, Parsons H, Shyamalan G.

J Hand Surg Asian Pac Vol. 2016 Feb;21(1):18-23. doi: 10.1142/S2424835516500016.


Genome-scale comparison of expanded gene families in Plasmodium ovale wallikeri and Plasmodium ovale curtisi with Plasmodium malariae and with other Plasmodium species.

Ansari HR, Templeton TJ, Subudhi AK, Ramaprasad A, Tang J, Lu F, Naeem R, Hashish Y, Oguike MC, Benavente ED, Clark TG, Sutherland CJ, Barnwell JW, Culleton R, Cao J, Pain A.

Int J Parasitol. 2016 Oct;46(11):685-96. doi: 10.1016/j.ijpara.2016.05.009. Epub 2016 Jul 5.


Fabrication of CoTiO3-TiO2 composite films from a heterobimetallic single source precursor for electrochemical sensing of dopamine.

Ehsan MA, Naeem R, Khaledi H, Sohail M, Hakeem Saeed A, Mazhar M.

Dalton Trans. 2016 Jun 21;45(25):10222-32. doi: 10.1039/c6dt01016d.


Genomic and Phenotypic Analyses Reveal the Emergence of an Atypical Salmonella enterica Serovar Senftenberg Variant in China.

Abd El Ghany M, Shi X, Li Y, Ansari HR, Hill-Cawthorne GA, Ho YS, Naeem R, Pickard D, Klena JD, Xu X, Pain A, Hu Q.

J Clin Microbiol. 2016 Aug;54(8):2014-22. doi: 10.1128/JCM.00052-16. Epub 2016 May 25.


Bomb blast injuries: an exploration of patient characteristics and outcome using Pakistan National Emergency Departments Surveillance (Pak-NEDS) data.

Khan I, Khan N, Naeem R, Kerai S, Allen K, Zia N, Shahbaz S, Afridi S, Siddiqui E, Khan U, Hyder AA, Razzak JA.

BMC Emerg Med. 2015;15 Suppl 2:S7. doi: 10.1186/1471-227X-15-S2-S7. Epub 2015 Dec 11.


Prehospital Airway Management in Emergency and Trauma Patients: A Cross-sectional Study of Ambulance Service Providers and Staff in a Low- and Middle-income Country.

Ismail S, Zia N, Samad K, Naeem R, Ahmad H, Raza A, Baqir M, Khan UR.

Prehosp Disaster Med. 2015 Dec;30(6):606-12. doi: 10.1017/S1049023X15005385. Epub 2015 Nov 12.


Genomic expression catalogue of a global collection of BCG vaccine strains show evidence for highly diverged metabolic and cell-wall adaptations.

Abdallah AM, Hill-Cawthorne GA, Otto TD, Coll F, Guerra-Assunção JA, Gao G, Naeem R, Ansari H, Malas TB, Adroub SA, Verboom T, Ummels R, Zhang H, Panigrahi AK, McNerney R, Brosch R, Clark TG, Behr MA, Bitter W, Pain A.

Sci Rep. 2015 Oct 21;5:15443. doi: 10.1038/srep15443.


Genome Sequence of a Multidrug-Resistant Strain of Stenotrophomonas maltophilia with Carbapenem Resistance, Isolated from King Abdullah Medical City, Makkah, Saudi Arabia.

Abdel-Haleem AM, Rchiad Z, Khan BK, Abdallah AM, Naeem R, Nikhat Sheerin S, Solovyev V, Ahmed A, Pain A.

Genome Announc. 2015 Oct 15;3(5). pii: e01166-15. doi: 10.1128/genomeA.01166-15.


Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites.

Woo YH, Ansari H, Otto TD, Klinger CM, Kolisko M, Michálek J, Saxena A, Shanmugam D, Tayyrov A, Veluchamy A, Ali S, Bernal A, del Campo J, Cihlář J, Flegontov P, Gornik SG, Hajdušková E, Horák A, Janouškovec J, Katris NJ, Mast FD, Miranda-Saavedra D, Mourier T, Naeem R, Nair M, Panigrahi AK, Rawlings ND, Padron-Regalado E, Ramaprasad A, Samad N, Tomčala A, Wilkes J, Neafsey DE, Doerig C, Bowler C, Keeling PJ, Roos DS, Dacks JB, Templeton TJ, Waller RF, Lukeš J, Oborník M, Pain A.

Elife. 2015 Jul 15;4:e06974. doi: 10.7554/eLife.06974.


Mycosis fungoides with epidermal mucinosis: a variant of mycosis fungoides with a spongiosis-like pattern.

Hu SW, Ratech H, Naeem R, Latkowski JA, Kamino H.

J Cutan Pathol. 2015 Oct;42(10):730-8. doi: 10.1111/cup.12513. Epub 2015 Jul 3.


Erratum to: A comparison of magnetic resonance arthrography and arthroscopic findings in the assessment of anterior shoulder dislocations.

Jordan RW, Naeem R, Srinivas K, Shyamalan G.

Skeletal Radiol. 2015 Jul;44(7):1071. doi: 10.1007/s00256-015-2156-y. No abstract available.


Comprehensive evaluation of Toxoplasma gondii VEG and Neospora caninum LIV genomes with tachyzoite stage transcriptome and proteome defines novel transcript features.

Ramaprasad A, Mourier T, Naeem R, Malas TB, Moussa E, Panigrahi A, Vermont SJ, Otto TD, Wastling J, Pain A.

PLoS One. 2015 Apr 13;10(4):e0124473. doi: 10.1371/journal.pone.0124473. eCollection 2015.


A comparison of magnetic resonance arthrography and arthroscopic findings in the assessment of anterior shoulder dislocations.

Jordan RW, Naeem R, Srinivas K, Shyamalan G.

Skeletal Radiol. 2015 May;44(5):653-7. doi: 10.1007/s00256-014-2080-6. Epub 2014 Dec 24. Erratum in: Skeletal Radiol. 2015 Jul;44(7):1071.


A de novo 10.79 Mb interstitial deletion at 2q13q14.2 involving PAX8 causing hypothyroidism and mullerian agenesis: a novel case report and literature review.

Ma D, Marion R, Punjabi NP, Pereira E, Samanich J, Agarwal C, Li J, Huang CK, Ramesh KH, Cannizzaro LA, Naeem R.

Mol Cytogenet. 2014 Nov 26;7(1):85. doi: 10.1186/s13039-014-0085-4. eCollection 2014.


Identification of a novel conjugative plasmid in mycobacteria that requires both type IV and type VII secretion.

Ummels R, Abdallah AM, Kuiper V, Aâjoud A, Sparrius M, Naeem R, Spaink HP, van Soolingen D, Pain A, Bitter W.

mBio. 2014 Sep 23;5(5):e01744-14. doi: 10.1128/mBio.01744-14.


The population structure of Vibrio cholerae from the Chandigarh Region of Northern India.

Abd El Ghany M, Chander J, Mutreja A, Rashid M, Hill-Cawthorne GA, Ali S, Naeem R, Thomson NR, Dougan G, Pain A.

PLoS Negl Trop Dis. 2014 Jul 24;8(7):e2981. doi: 10.1371/journal.pntd.0002981. eCollection 2014 Jul.


SVAMP: sequence variation analysis, maps and phylogeny.

Naeem R, Hidayah L, Preston MD, Clark TG, Pain A.

Bioinformatics. 2014 Aug 1;30(15):2227-9. doi: 10.1093/bioinformatics/btu176. Epub 2014 Apr 3.


Hypopigmented mycosis fungoides in childhood and adolescence: a long-term retrospective study.

Castano E, Glick S, Wolgast L, Naeem R, Sunkara J, Elston D, Jacobson M.

J Cutan Pathol. 2013 Nov;40(11):924-34. doi: 10.1111/cup.12217.


Bony erosions secondary to osteotuberculosis of the hand.

Souéid A, Naeem R.

Surg Infect (Larchmt). 2013 Aug;14(4):430-1. doi: 10.1089/sur.2012.076. Epub 2013 Jul 16. No abstract available.


Risk factors for colonoscopic perforation: a population-based study of 80118 cases.

Hamdani U, Naeem R, Haider F, Bansal P, Komar M, Diehl DL, Kirchner HL.

World J Gastroenterol. 2013 Jun 21;19(23):3596-601. doi: 10.3748/wjg.v19.i23.3596.


Modified camitz opponensplasty for severe thenar wasting secondary to carpal tunnel syndrome: case series.

Naeem R, Lahiri A.

J Hand Surg Am. 2013 Apr;38(4):795-8. doi: 10.1016/j.jhsa.2013.01.027. Epub 2013 Mar 6. Review.


READSCAN: a fast and scalable pathogen discovery program with accurate genome relative abundance estimation.

Naeem R, Rashid M, Pain A.

Bioinformatics. 2013 Feb 1;29(3):391-2. doi: 10.1093/bioinformatics/bts684. Epub 2012 Nov 28.


The dangers of intravenous cannulation within the anatomical snuffbox.

Naeem R, Soueid A, Lahiri A.

J Hand Surg Eur Vol. 2012 May;37(4):362-3. doi: 10.1177/1753193411433524. Epub 2011 Dec 21. No abstract available.


Genetic differentiation and geographical Relationship of Asian barley landraces using SSRs.

Naeem R, Dahleen L, Mirza B.

Genet Mol Biol. 2011 Apr;34(2):268-73. Epub 2011 Apr 1.


Myelodysplastic syndromes arising in patients with germline TP53 mutation and Li-Fraumeni syndrome.

Talwalkar SS, Yin CC, Naeem RC, Hicks MJ, Strong LC, Abruzzo LV.

Arch Pathol Lab Med. 2010 Jul;134(7):1010-5. doi: 10.1043/2009-0015-OA.1.


Molecular monitoring of 8p11 myeloproliferative syndrome in an infant.

Zhang WW, Habeebu S, Sheehan AM, Naeem R, Hernandez VS, Dreyer ZE, López-Terrada D.

J Pediatr Hematol Oncol. 2009 Nov;31(11):879-83. doi: 10.1097/MPH.0b013e3181b83fd0.


Overexpression of ZNF342 by juxtaposition with MPO promoter/enhancer in the novel translocation t(17;19)(q23;q13.32) in pediatric acute myeloid leukemia and analysis of ZNF342 expression in leukemia.

Poland KS, Shardy DL, Azim M, Naeem R, Krance RA, Dreyer ZE, Neeley ES, Zhang N, Qiu YH, Kornblau SM, Plon SE.

Genes Chromosomes Cancer. 2009 Jun;48(6):480-9. doi: 10.1002/gcc.20654.


Quantitation of Aurora kinase A gene copy number in urine sediments and bladder cancer detection.

Park HS, Park WS, Bondaruk J, Tanaka N, Katayama H, Lee S, Spiess PE, Steinberg JR, Wang Z, Katz RL, Dinney C, Elias KJ, Lotan Y, Naeem RC, Baggerly K, Sen S, Grossman HB, Czerniak B.

J Natl Cancer Inst. 2008 Oct 1;100(19):1401-11. doi: 10.1093/jnci/djn304. Epub 2008 Sep 23. Erratum in: J Natl Cancer Inst. 2008 Dec 3;100(23):1740.


Syndromic thrombocytopenia and predisposition to acute myelogenous leukemia caused by constitutional microdeletions on chromosome 21q.

Shinawi M, Erez A, Shardy DL, Lee B, Naeem R, Weissenberger G, Chinault AC, Cheung SW, Plon SE.

Blood. 2008 Aug 15;112(4):1042-7. doi: 10.1182/blood-2008-01-135970. Epub 2008 May 16.


Clear cell sarcoma of soft tissue: diagnostic utility of fluorescence in situ hybridization and reverse transcriptase polymerase chain reaction.

Curry CV, Dishop MK, Hicks MJ, Naeem R, Reed JA, López-Terrada DH.

J Cutan Pathol. 2008 Apr;35(4):411-7. doi: 10.1111/j.1600-0560.2007.00821.x.


Clinical utility of array comparative genomic hybridization for detection of chromosomal abnormalities in pediatric acute lymphoblastic leukemia.

Rabin KR, Man TK, Yu A, Folsom MR, Zhao YJ, Rao PH, Plon SE, Naeem RC.

Pediatr Blood Cancer. 2008 Aug;51(2):171-7. doi: 10.1002/pbc.21488.


Overexpression of Eg5 causes genomic instability and tumor formation in mice.

Castillo A, Morse HC 3rd, Godfrey VL, Naeem R, Justice MJ.

Cancer Res. 2007 Nov 1;67(21):10138-47.

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