Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 35

1.

Evaluation of Oxacillin and Cefoxitin Disk Diffusion and Microbroth Dilution Methods for Detecting mecA-mediated β-lactam Resistance in Contemporary Staphylococcus epidermidis Isolates.

Naccache SN, Callan K, Burnham CA, Wallace MA, Westblade LF, Dien Bard J; Staphylococcus Ad Hoc Working Group of the CLSI Antimicrobial Susceptibility Testing Subcommittee.

J Clin Microbiol. 2019 Aug 28. pii: JCM.00961-19. doi: 10.1128/JCM.00961-19. [Epub ahead of print]

PMID:
31462553
2.

Back to the basics: Biochemical testing for pathogen identification in the era of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry (MALDI-TOF MS).

Pandey U, Naccache SN, Bard JD.

J Clin Microbiol. 2019 Jul 17. pii: JCM.00498-19. doi: 10.1128/JCM.00498-19. [Epub ahead of print]

PMID:
31315960
3.

Metagenomic Next-Generation Sequencing of the 2014 Ebola Virus Disease Outbreak in the Democratic Republic of the Congo.

Li T, Mbala-Kingebeni P, Naccache SN, Thézé J, Bouquet J, Federman S, Somasekar S, Yu G, Sanchez-San Martin C, Achari A, Schneider BS, Rimoin AW, Rambaut A, Nsio J, Mulembakani P, Ahuka-Mundeke S, Kapetshi J, Pybus OG, Muyembe-Tamfum JJ, Chiu CY.

J Clin Microbiol. 2019 Aug 26;57(9). pii: e00827-19. doi: 10.1128/JCM.00827-19. Print 2019 Sep.

4.

Clinical Metagenomic Sequencing for Diagnosis of Meningitis and Encephalitis.

Wilson MR, Sample HA, Zorn KC, Arevalo S, Yu G, Neuhaus J, Federman S, Stryke D, Briggs B, Langelier C, Berger A, Douglas V, Josephson SA, Chow FC, Fulton BD, DeRisi JL, Gelfand JM, Naccache SN, Bender J, Dien Bard J, Murkey J, Carlson M, Vespa PM, Vijayan T, Allyn PR, Campeau S, Humphries RM, Klausner JD, Ganzon CD, Memar F, Ocampo NA, Zimmermann LL, Cohen SH, Polage CR, DeBiasi RL, Haller B, Dallas R, Maron G, Hayden R, Messacar K, Dominguez SR, Miller S, Chiu CY.

N Engl J Med. 2019 Jun 13;380(24):2327-2340. doi: 10.1056/NEJMoa1803396.

5.

Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid.

Miller S, Naccache SN, Samayoa E, Messacar K, Arevalo S, Federman S, Stryke D, Pham E, Fung B, Bolosky WJ, Ingebrigtsen D, Lorizio W, Paff SM, Leake JA, Pesano R, DeBiasi R, Dominguez S, Chiu CY.

Genome Res. 2019 May;29(5):831-842. doi: 10.1101/gr.238170.118. Epub 2019 Apr 16.

6.

Closing the Brief Case: Retropharyngeal Abscess in a 14-Year-Old Caused by Fusobacterium necrophorum.

Van TT, Naccache SN, Dien Bard J.

J Clin Microbiol. 2018 Nov 27;56(12). pii: e00488-18. doi: 10.1128/JCM.00488-18. Print 2018 Dec. No abstract available.

7.

The Brief Case: Retropharyngeal Abscess in a 14-Year-Old Caused by Fusobacterium necrophorum.

Van TT, Naccache SN, Dien Bard J.

J Clin Microbiol. 2018 Nov 27;56(12). pii: e00487-18. doi: 10.1128/JCM.00487-18. Print 2018 Dec. No abstract available.

8.

One Year in the Life of a Rapid Syndromic Panel for Meningitis/Encephalitis: a Pediatric Tertiary Care Facility's Experience.

Naccache SN, Lustestica M, Fahit M, Mestas J, Dien Bard J.

J Clin Microbiol. 2018 Apr 25;56(5). pii: e01940-17. doi: 10.1128/JCM.01940-17. Print 2018 May.

9.

Viral Surveillance in Serum Samples From Patients With Acute Liver Failure By Metagenomic Next-Generation Sequencing.

Somasekar S, Lee D, Rule J, Naccache SN, Stone M, Busch MP, Sanders C, Lee WM, Chiu CY.

Clin Infect Dis. 2017 Oct 16;65(9):1477-1485. doi: 10.1093/cid/cix596.

10.

Diagnosis of Fatal Human Case of St. Louis Encephalitis Virus Infection by Metagenomic Sequencing, California, 2016.

Chiu CY, Coffey LL, Murkey J, Symmes K, Sample HA, Wilson MR, Naccache SN, Arevalo S, Somasekar S, Federman S, Stryke D, Vespa P, Schiller G, Messenger S, Humphries R, Miller S, Klausner JD.

Emerg Infect Dis. 2017 Oct;23(10):1964-1968. doi: 10.3201/eid2310.161986.

11.

The eukaryotic gut virome in hematopoietic stem cell transplantation: new clues in enteric graft-versus-host disease.

Legoff J, Resche-Rigon M, Bouquet J, Robin M, Naccache SN, Mercier-Delarue S, Federman S, Samayoa E, Rousseau C, Piron P, Kapel N, Simon F, Socié G, Chiu CY.

Nat Med. 2017 Sep;23(9):1080-1085. doi: 10.1038/nm.4380. Epub 2017 Jul 31.

PMID:
28759053
12.

Neurobrucellosis: Unexpected Answer From Metagenomic Next-Generation Sequencing.

Mongkolrattanothai K, Naccache SN, Bender JM, Samayoa E, Pham E, Yu G, Dien Bard J, Miller S, Aldrovandi G, Chiu CY.

J Pediatric Infect Dis Soc. 2017 Nov 24;6(4):393-398. doi: 10.1093/jpids/piw066.

13.

Use of a Molecular Panel To Aid in Diagnosis of Culture-Negative Meningitis.

Dien Bard J, Naccache SN, Bender JM.

J Clin Microbiol. 2016 Dec;54(12):3069-3070. Epub 2016 Sep 28. No abstract available.

14.

Distinct Zika Virus Lineage in Salvador, Bahia, Brazil.

Naccache SN, Thézé J, Sardi SI, Somasekar S, Greninger AL, Bandeira AC, Campos GS, Tauro LB, Faria NR, Pybus OG, Chiu CY.

Emerg Infect Dis. 2016 Oct;22(10):1788-92. doi: 10.3201/eid2210.160663. Epub 2016 Oct 15.

15.

Coinfections of Zika and Chikungunya Viruses in Bahia, Brazil, Identified by Metagenomic Next-Generation Sequencing.

Sardi SI, Somasekar S, Naccache SN, Bandeira AC, Tauro LB, Campos GS, Chiu CY.

J Clin Microbiol. 2016 Sep;54(9):2348-53. doi: 10.1128/JCM.00877-16. Epub 2016 Jul 13.

16.

Two human immunodeficiency virus Type 2 cases in US blood donors including serologic, molecular, and genomic characterization of an epidemiologically unusual case.

Stramer SL, Yu G, Herron R, Espinoza N, Foster GA, Naccache SN, Brodsky JP, Ong E, Linnen JM, Dyer N, Styer LM, Parker MM, Chiu CY.

Transfusion. 2016 Jun;56(6 Pt 2):1560-8. doi: 10.1111/trf.13600. Epub 2016 Apr 15.

PMID:
27079968
17.

Erratum to: Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing.

Greninger AL, Messacar K, Dunnebacke T, Naccache SN, Federman S, Bouquet J, Mirsky D, Nomura Y, Yagi S, Glaser C, Vollmer M, Press CA, Kleinschmidt-DeMasters BK, Dominguez SR, Chiu CY.

Genome Med. 2016 Jan 11;8(1):1. doi: 10.1186/s13073-015-0257-9. No abstract available.

18.

Discovery of a Novel Human Pegivirus in Blood Associated with Hepatitis C Virus Co-Infection.

Berg MG, Lee D, Coller K, Frankel M, Aronsohn A, Cheng K, Forberg K, Marcinkus M, Naccache SN, Dawson G, Brennan C, Jensen DM, Hackett J Jr, Chiu CY.

PLoS Pathog. 2015 Dec 11;11(12):e1005325. doi: 10.1371/journal.ppat.1005325. eCollection 2015 Dec. Erratum in: PLoS Pathog. 2016 Jan;12(1):e1005386.

19.

Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing.

Greninger AL, Messacar K, Dunnebacke T, Naccache SN, Federman S, Bouquet J, Mirsky D, Nomura Y, Yagi S, Glaser C, Vollmer M, Press CA, Kleinschmidt-DeMasters BK, Dominguez SR, Chiu CY.

Genome Med. 2015 Dec 1;7:113. doi: 10.1186/s13073-015-0235-2. Erratum in: Genome Med. 2016;8(1):1. Klenschmidt-DeMasters, Bette K [corrected to Kleinschmidt-DeMasters, Bette K].

20.

Utility of Metagenomic Next-Generation Sequencing for Characterization of HIV and Human Pegivirus Diversity.

Luk KC, Berg MG, Naccache SN, Kabre B, Federman S, Mbanya D, Kaptué L, Chiu CY, Brennan CA, Hackett J Jr.

PLoS One. 2015 Nov 23;10(11):e0141723. doi: 10.1371/journal.pone.0141723. eCollection 2015.

21.

Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis.

Greninger AL, Naccache SN, Federman S, Yu G, Mbala P, Bres V, Stryke D, Bouquet J, Somasekar S, Linnen JM, Dodd R, Mulembakani P, Schneider BS, Muyembe-Tamfum JJ, Stramer SL, Chiu CY.

Genome Med. 2015 Sep 29;7:99. doi: 10.1186/s13073-015-0220-9.

22.

Genomic Assays for Identification of Chikungunya Virus in Blood Donors, Puerto Rico, 2014.

Chiu CY, Bres V, Yu G, Krysztof D, Naccache SN, Lee D, Pfeil J, Linnen JM, Stramer SL.

Emerg Infect Dis. 2015 Aug;21(8):1409-13. doi: 10.3201/eid2108.150458.

23.

A novel outbreak enterovirus D68 strain associated with acute flaccid myelitis cases in the USA (2012-14): a retrospective cohort study.

Greninger AL, Naccache SN, Messacar K, Clayton A, Yu G, Somasekar S, Federman S, Stryke D, Anderson C, Yagi S, Messenger S, Wadford D, Xia D, Watt JP, Van Haren K, Dominguez SR, Glaser C, Aldrovandi G, Chiu CY.

Lancet Infect Dis. 2015 Jun;15(6):671-82. doi: 10.1016/S1473-3099(15)70093-9. Epub 2015 Mar 31.

24.

An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing data.

Deng X, Naccache SN, Ng T, Federman S, Li L, Chiu CY, Delwart EL.

Nucleic Acids Res. 2015 Apr 20;43(7):e46. doi: 10.1093/nar/gkv002. Epub 2015 Jan 13.

25.

Diagnosis of neuroinvasive astrovirus infection in an immunocompromised adult with encephalitis by unbiased next-generation sequencing.

Naccache SN, Peggs KS, Mattes FM, Phadke R, Garson JA, Grant P, Samayoa E, Federman S, Miller S, Lunn MP, Gant V, Chiu CY.

Clin Infect Dis. 2015 Mar 15;60(6):919-23. doi: 10.1093/cid/ciu912. Epub 2015 Jan 7.

26.

A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples.

Naccache SN, Federman S, Veeraraghavan N, Zaharia M, Lee D, Samayoa E, Bouquet J, Greninger AL, Luk KC, Enge B, Wadford DA, Messenger SL, Genrich GL, Pellegrino K, Grard G, Leroy E, Schneider BS, Fair JN, Martínez MA, Isa P, Crump JA, DeRisi JL, Sittler T, Hackett J Jr, Miller S, Chiu CY.

Genome Res. 2014 Jul;24(7):1180-92. doi: 10.1101/gr.171934.113. Epub 2014 Jun 4.

27.

Actionable diagnosis of neuroleptospirosis by next-generation sequencing.

Wilson MR, Naccache SN, Samayoa E, Biagtan M, Bashir H, Yu G, Salamat SM, Somasekar S, Federman S, Miller S, Sokolic R, Garabedian E, Candotti F, Buckley RH, Reed KD, Meyer TL, Seroogy CM, Galloway R, Henderson SL, Gern JE, DeRisi JL, Chiu CY.

N Engl J Med. 2014 Jun 19;370(25):2408-17. doi: 10.1056/NEJMoa1401268. Epub 2014 Jun 4.

28.

Concerns over the origin of NIH-CQV, a novel virus discovered in Chinese patients with seronegative hepatitis.

Naccache SN, Hackett J Jr, Delwart EL, Chiu CY.

Proc Natl Acad Sci U S A. 2014 Mar 18;111(11):E976. doi: 10.1073/pnas.1317064111. Epub 2014 Feb 26. No abstract available.

29.

The perils of pathogen discovery: origin of a novel parvovirus-like hybrid genome traced to nucleic acid extraction spin columns.

Naccache SN, Greninger AL, Lee D, Coffey LL, Phan T, Rein-Weston A, Aronsohn A, Hackett J Jr, Delwart EL, Chiu CY.

J Virol. 2013 Nov;87(22):11966-77. doi: 10.1128/JVI.02323-13. Epub 2013 Sep 11.

30.

The genome sequence of Lone Star virus, a highly divergent bunyavirus found in the Amblyomma americanum tick.

Swei A, Russell BJ, Naccache SN, Kabre B, Veeraraghavan N, Pilgard MA, Johnson BJ, Chiu CY.

PLoS One. 2013 Apr 29;8(4):e62083. doi: 10.1371/journal.pone.0062083. Print 2013.

31.

A novel bocavirus in canine liver.

Li L, Pesavento PA, Leutenegger CM, Estrada M, Coffey LL, Naccache SN, Samayoa E, Chiu C, Qiu J, Wang C, Deng X, Delwart E.

Virol J. 2013 Feb 13;10:54. doi: 10.1186/1743-422X-10-54.

32.

Myosin VI altered at threonine 406 stabilizes actin filaments in vivo.

Naccache SN, Hasson T.

Cell Motil Cytoskeleton. 2006 Oct;63(10):633-45.

PMID:
16917816
33.

Binding of internalized receptors to the PDZ domain of GIPC/synectin recruits myosin VI to endocytic vesicles.

Naccache SN, Hasson T, Horowitz A.

Proc Natl Acad Sci U S A. 2006 Aug 22;103(34):12735-40. Epub 2006 Aug 14. Erratum in: Proc Natl Acad Sci U S A. 2006 Oct 10;103(41):15272.

34.

Uncoated endocytic vesicles require the unconventional myosin, Myo6, for rapid transport through actin barriers.

Aschenbrenner L, Naccache SN, Hasson T.

Mol Biol Cell. 2004 May;15(5):2253-63. Epub 2004 Mar 5.

35.

Supplemental Content

Loading ...
Support Center