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Items: 24


Exploring the extracellular matrix in health and disease using proteomics.

Taha IN, Naba A.

Essays Biochem. 2019 Sep 13;63(3):417-432. doi: 10.1042/EBC20190001. Print 2019 Sep 13. Review.


MatrixDB: integration of new data with a focus on glycosaminoglycan interactions.

Clerc O, Deniaud M, Vallet SD, Naba A, Rivet A, Perez S, Thierry-Mieg N, Ricard-Blum S.

Nucleic Acids Res. 2019 Jan 8;47(D1):D376-D381. doi: 10.1093/nar/gky1035.


The cancer matrisome: From comprehensive characterization to biomarker discovery.

Socovich AM, Naba A.

Semin Cell Dev Biol. 2019 May;89:157-166. doi: 10.1016/j.semcdb.2018.06.005. Epub 2018 Jul 13. Review.


Extracellular matrix in lung development, homeostasis and disease.

Zhou Y, Horowitz JC, Naba A, Ambalavanan N, Atabai K, Balestrini J, Bitterman PB, Corley RA, Ding BS, Engler AJ, Hansen KC, Hagood JS, Kheradmand F, Lin QS, Neptune E, Niklason L, Ortiz LA, Parks WC, Tschumperlin DJ, White ES, Chapman HA, Thannickal VJ.

Matrix Biol. 2018 Nov;73:77-104. doi: 10.1016/j.matbio.2018.03.005. Epub 2018 Mar 8. Review.


The in-silico zebrafish matrisome: A new tool to study extracellular matrix gene and protein functions.

Nauroy P, Hughes S, Naba A, Ruggiero F.

Matrix Biol. 2018 Jan;65:5-13. doi: 10.1016/j.matbio.2017.07.001. Epub 2017 Jul 21.


Characterization of the Extracellular Matrix of Normal and Diseased Tissues Using Proteomics.

Naba A, Pearce OMT, Del Rosario A, Ma D, Ding H, Rajeeve V, Cutillas PR, Balkwill FR, Hynes RO.

J Proteome Res. 2017 Aug 4;16(8):3083-3091. doi: 10.1021/acs.jproteome.7b00191. Epub 2017 Jul 19.


Quantitative proteomics identify Tenascin-C as a promoter of lung cancer progression and contributor to a signature prognostic of patient survival.

Gocheva V, Naba A, Bhutkar A, Guardia T, Miller KM, Li CM, Dayton TL, Sanchez-Rivera FJ, Kim-Kiselak C, Jailkhani N, Winslow MM, Del Rosario A, Hynes RO, Jacks T.

Proc Natl Acad Sci U S A. 2017 Jul 11;114(28):E5625-E5634. doi: 10.1073/pnas.1707054114. Epub 2017 Jun 26.


Proteomic characterization of human multiple myeloma bone marrow extracellular matrix.

Glavey SV, Naba A, Manier S, Clauser K, Tahri S, Park J, Reagan MR, Moschetta M, Mishima Y, Gambella M, Rocci A, Sacco A, O'Dwyer ME, Asara JM, Palumbo A, Roccaro AM, Hynes RO, Ghobrial IM.

Leukemia. 2017 Nov;31(11):2426-2434. doi: 10.1038/leu.2017.102. Epub 2017 Mar 27.


Comprehensive proteomic characterization of stem cell-derived extracellular matrices.

Ragelle H, Naba A, Larson BL, Zhou F, Prijić M, Whittaker CA, Del Rosario A, Langer R, Hynes RO, Anderson DG.

Biomaterials. 2017 Jun;128:147-159. doi: 10.1016/j.biomaterials.2017.03.008. Epub 2017 Mar 7.


Quantitative proteomic profiling of the extracellular matrix of pancreatic islets during the angiogenic switch and insulinoma progression.

Naba A, Clauser KR, Mani DR, Carr SA, Hynes RO.

Sci Rep. 2017 Jan 10;7:40495. doi: 10.1038/srep40495.


Lamellipodin promotes invasive 3D cancer cell migration via regulated interactions with Ena/VASP and SCAR/WAVE.

Carmona G, Perera U, Gillett C, Naba A, Law AL, Sharma VP, Wang J, Wyckoff J, Balsamo M, Mosis F, De Piano M, Monypenny J, Woodman N, McConnell RE, Mouneimne G, Van Hemelrijck M, Cao Y, Condeelis J, Hynes RO, Gertler FB, Krause M.

Oncogene. 2016 Sep 29;35(39):5155-69. doi: 10.1038/onc.2016.47. Epub 2016 Mar 21.


Enrichment of Extracellular Matrix Proteins from Tissues and Digestion into Peptides for Mass Spectrometry Analysis.

Naba A, Clauser KR, Hynes RO.

J Vis Exp. 2015 Jul 23;(101):e53057. doi: 10.3791/53057.


The extracellular matrix: Tools and insights for the "omics" era.

Naba A, Clauser KR, Ding H, Whittaker CA, Carr SA, Hynes RO.

Matrix Biol. 2016 Jan;49:10-24. doi: 10.1016/j.matbio.2015.06.003. Epub 2015 Jul 8. Review.


Extracellular matrix signatures of human primary metastatic colon cancers and their metastases to liver.

Naba A, Clauser KR, Whittaker CA, Carr SA, Tanabe KK, Hynes RO.

BMC Cancer. 2014 Jul 18;14:518. doi: 10.1186/1471-2407-14-518.


Extracellular matrix signatures of human mammary carcinoma identify novel metastasis promoters.

Naba A, Clauser KR, Lamar JM, Carr SA, Hynes RO.

Elife. 2014 Mar 11;3:e01308. doi: 10.7554/eLife.01308.


Towards definition of an ECM parts list: an advance on GO categories.

Naba A, Hoersch S, Hynes RO.

Matrix Biol. 2012 Sep-Oct;31(7-8):371-2. doi: 10.1016/j.matbio.2012.11.008. No abstract available.


Ezrin phosphorylation on tyrosine 477 regulates invasion and metastasis of breast cancer cells.

Mak H, Naba A, Varma S, Schick C, Day A, SenGupta SK, Arpin M, Elliott BE.

BMC Cancer. 2012 Mar 7;12:82. doi: 10.1186/1471-2407-12-82.


Ezrin regulates microvillus morphogenesis by promoting distinct activities of Eps8 proteins.

Zwaenepoel I, Naba A, Da Cunha MM, Del Maestro L, Formstecher E, Louvard D, Arpin M.

Mol Biol Cell. 2012 Mar;23(6):1080-94. doi: 10.1091/mbc.E11-07-0588. Epub 2012 Jan 19.


The matrisome: in silico definition and in vivo characterization by proteomics of normal and tumor extracellular matrices.

Naba A, Clauser KR, Hoersch S, Liu H, Carr SA, Hynes RO.

Mol Cell Proteomics. 2012 Apr;11(4):M111.014647. doi: 10.1074/mcp.M111.014647. Epub 2011 Dec 9.


Overview of the matrisome--an inventory of extracellular matrix constituents and functions.

Hynes RO, Naba A.

Cold Spring Harb Perspect Biol. 2012 Jan 1;4(1):a004903. doi: 10.1101/cshperspect.a004903. Review.


Emerging role for ERM proteins in cell adhesion and migration.

Arpin M, Chirivino D, Naba A, Zwaenepoel I.

Cell Adh Migr. 2011 Mar-Apr;5(2):199-206. Epub 2011 Mar 1. Review.


Ezrin is a target for oncogenic Kit mutants in murine erythroleukemia.

Monni R, Haddaoui L, Naba A, Gallais I, Arpin M, Mayeux P, Moreau-Gachelin F.

Blood. 2008 Mar 15;111(6):3163-72. doi: 10.1182/blood-2007-09-110510. Epub 2008 Jan 8.


Spatial recruitment and activation of the Fes kinase by ezrin promotes HGF-induced cell scattering.

Naba A, Reverdy C, Louvard D, Arpin M.

EMBO J. 2008 Jan 9;27(1):38-50. Epub 2007 Nov 29.

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