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Analysis of Orthologous SECONDARY WALL-ASSOCIATED NAC DOMAIN1 (SND1) Promotor Activity in Herbaceous and Woody Angiosperms.

Tonfack LB, Hussey SG, Veale A, Myburg AA, Mizrachi E.

Int J Mol Sci. 2019 Sep 18;20(18). pii: E4623. doi: 10.3390/ijms20184623.


Dual RNA-Seq Analysis of the Pine-Fusarium circinatum Interaction in Resistant (Pinus tecunumanii) and Susceptible (Pinus patula) Hosts.

Visser EA, Wegrzyn JL, Steenkamp ET, Myburg AA, Naidoo S.

Microorganisms. 2019 Sep 4;7(9). pii: E315. doi: 10.3390/microorganisms7090315.


Systems and Synthetic Biology of Forest Trees: A Bioengineering Paradigm for Woody Biomass Feedstocks.

Myburg AA, Hussey SG, Wang JP, Street NR, Mizrachi E.

Front Plant Sci. 2019 Jun 20;10:775. doi: 10.3389/fpls.2019.00775. eCollection 2019. Review.


A systems genetics analysis in Eucalyptus reveals coordination of metabolic pathways associated with xylan modification in wood-forming tissues.

Wierzbicki MP, Christie N, Pinard D, Mansfield SD, Mizrachi E, Myburg AA.

New Phytol. 2019 Sep;223(4):1952-1972. doi: 10.1111/nph.15972. Epub 2019 Jul 20.


Identification and functional evaluation of accessible chromatin associated with wood formation in Eucalyptus grandis.

Brown K, Takawira LT, O'Neill MM, Mizrachi E, Myburg AA, Hussey SG.

New Phytol. 2019 Sep;223(4):1937-1951. doi: 10.1111/nph.15897. Epub 2019 Jun 14.


Xylan in the Middle: Understanding Xylan Biosynthesis and Its Metabolic Dependencies Toward Improving Wood Fiber for Industrial Processing.

Wierzbicki MP, Maloney V, Mizrachi E, Myburg AA.

Front Plant Sci. 2019 Feb 25;10:176. doi: 10.3389/fpls.2019.00176. eCollection 2019. Review.


The plastid and mitochondrial genomes of Eucalyptus grandis.

Pinard D, Myburg AA, Mizrachi E.

BMC Genomics. 2019 Feb 13;20(1):132. doi: 10.1186/s12864-019-5444-4.


Organellar carbon metabolism is coordinated with distinct developmental phases of secondary xylem.

Pinard D, Fierro AC, Marchal K, Myburg AA, Mizrachi E.

New Phytol. 2019 Jun;222(4):1832-1845. doi: 10.1111/nph.15739. Epub 2019 Mar 25.


A Standardized Synthetic Eucalyptus Transcription Factor and Promoter Panel for Re-engineering Secondary Cell Wall Regulation in Biomass and Bioenergy Crops.

Hussey SG, Grima-Pettenati J, Myburg AA, Mizrachi E, Brady SM, Yoshikuni Y, Deutsch S.

ACS Synth Biol. 2019 Feb 15;8(2):463-465. doi: 10.1021/acssynbio.8b00440. Epub 2019 Jan 16.


Defence transcriptome assembly and pathogenesis related gene family analysis in Pinus tecunumanii (low elevation).

Visser EA, Wegrzyn JL, Myburg AA, Naidoo S.

BMC Genomics. 2018 Aug 23;19(1):632. doi: 10.1186/s12864-018-5015-0.


Temporal analysis of Arabidopsis genes activated by Eucalyptus grandis NAC transcription factors associated with xylem fibre and vessel development.

Laubscher M, Brown K, Tonfack LB, Myburg AA, Mizrachi E, Hussey SG.

Sci Rep. 2018 Jul 20;8(1):10983. doi: 10.1038/s41598-018-29278-w.


Terpenes associated with resistance against the gall wasp, Leptocybe invasa, in Eucalyptus grandis.

Naidoo S, Christie N, Acosta JJ, Mphahlele MM, Payn KG, Myburg AA, Külheim C.

Plant Cell Environ. 2018 Aug;41(8):1840-1851. doi: 10.1111/pce.13323. Epub 2018 Jun 1.


Carbohydrate active enzyme domains from extreme thermophiles: components of a modular toolbox for lignocellulose degradation.

Botha J, Mizrachi E, Myburg AA, Cowan DA.

Extremophiles. 2018 Jan;22(1):1-12. doi: 10.1007/s00792-017-0974-7. Epub 2017 Nov 6. Review.


In planta expression of hyperthermophilic enzymes as a strategy for accelerated lignocellulosic digestion.

Mir BA, Myburg AA, Mizrachi E, Cowan DA.

Sci Rep. 2017 Sep 13;7(1):11462. doi: 10.1038/s41598-017-11026-1.


A time series transcriptome analysis of cassava (Manihot esculenta Crantz) varieties challenged with Ugandan cassava brown streak virus.

Amuge T, Berger DK, Katari MS, Myburg AA, Goldman SL, Ferguson ME.

Sci Rep. 2017 Aug 29;7(1):9747. doi: 10.1038/s41598-017-09617-z.


QTL Mapping for Pest and Disease Resistance in Cassava and Coincidence of Some QTL with Introgression Regions Derived from Manihot glaziovii.

Nzuki I, Katari MS, Bredeson JV, Masumba E, Kapinga F, Salum K, Mkamilo GS, Shah T, Lyons JB, Rokhsar DS, Rounsley S, Myburg AA, Ferguson ME.

Front Plant Sci. 2017 Jul 21;8:1168. doi: 10.3389/fpls.2017.01168. eCollection 2017.


QTL associated with resistance to cassava brown streak and cassava mosaic diseases in a bi-parental cross of two Tanzanian farmer varieties, Namikonga and Albert.

Masumba EA, Kapinga F, Mkamilo G, Salum K, Kulembeka H, Rounsley S, Bredeson JV, Lyons JB, Rokhsar DS, Kanju E, Katari MS, Myburg AA, van der Merwe NA, Ferguson ME.

Theor Appl Genet. 2017 Oct;130(10):2069-2090. doi: 10.1007/s00122-017-2943-z. Epub 2017 Jul 13.


Integrated analysis and transcript abundance modelling of H3K4me3 and H3K27me3 in developing secondary xylem.

Hussey SG, Loots MT, van der Merwe K, Mizrachi E, Myburg AA.

Sci Rep. 2017 Jun 13;7(1):3370. doi: 10.1038/s41598-017-03665-1.


Genomewide analysis of the lateral organ boundaries domain gene family in Eucalyptus grandis reveals members that differentially impact secondary growth.

Lu Q, Shao F, Macmillan C, Wilson IW, van der Merwe K, Hussey SG, Myburg AA, Dong X, Qiu D.

Plant Biotechnol J. 2018 Jan;16(1):124-136. doi: 10.1111/pbi.12754. Epub 2017 Jul 25.


Evidence for salicylic acid signalling and histological changes in the defence response of Eucalyptus grandis to Chrysoporthe austroafricana.

Zwart L, Berger DK, Moleleki LN, van der Merwe NA, Myburg AA, Naidoo S.

Sci Rep. 2017 Mar 28;7:45402. doi: 10.1038/srep45402.


Network-based integration of systems genetics data reveals pathways associated with lignocellulosic biomass accumulation and processing.

Mizrachi E, Verbeke L, Christie N, Fierro AC, Mansfield SD, Davis MF, Gjersing E, Tuskan GA, Van Montagu M, Van de Peer Y, Marchal K, Myburg AA.

Proc Natl Acad Sci U S A. 2017 Jan 31;114(5):1195-1200. doi: 10.1073/pnas.1620119114. Epub 2017 Jan 17.


Localization and Transcriptional Responses of Chrysoporthe austroafricana in Eucalyptus grandis Identify Putative Pathogenicity Factors.

Mangwanda R, Zwart L, van der Merwe NA, Moleleki LN, Berger DK, Myburg AA, Naidoo S.

Front Microbiol. 2016 Dec 8;7:1953. doi: 10.3389/fmicb.2016.01953. eCollection 2016.


Insect Gallers and Their Plant Hosts: From Omics Data to Systems Biology.

Oates CN, Denby KJ, Myburg AA, Slippers B, Naidoo S.

Int J Mol Sci. 2016 Nov 18;17(11). pii: E1891. Review.


Systems genetics reveals a transcriptional network associated with susceptibility in the maize-grey leaf spot pathosystem.

Christie N, Myburg AA, Joubert F, Murray SL, Carstens M, Lin YC, Meyer J, Crampton BG, Christensen SA, Ntuli JF, Wighard SS, Van de Peer Y, Berger DK.

Plant J. 2017 Feb;89(4):746-763. doi: 10.1111/tpj.13419. Epub 2017 Feb 13.


Dual RNA-Sequencing of Eucalyptus nitens during Phytophthora cinnamomi Challenge Reveals Pathogen and Host Factors Influencing Compatibility.

Meyer FE, Shuey LS, Naidoo S, Mamni T, Berger DK, Myburg AA, van den Berg N, Naidoo S.

Front Plant Sci. 2016 Mar 2;7:191. doi: 10.3389/fpls.2016.00191. eCollection 2016.


Functional network analysis of genes differentially expressed during xylogenesis in soc1ful woody Arabidopsis plants.

Davin N, Edger PP, Hefer CA, Mizrachi E, Schuetz M, Smets E, Myburg AA, Douglas CJ, Schranz ME, Lens F.

Plant J. 2016 Jun;86(5):376-90. doi: 10.1111/tpj.13157.


Systems genetics of wood formation.

Mizrachi E, Myburg AA.

Curr Opin Plant Biol. 2016 Apr;30:94-100. doi: 10.1016/j.pbi.2016.02.007. Epub 2016 Mar 1. Review.


The Arabidopsis Domain of Unknown Function 1218 (DUF1218) Containing Proteins, MODIFYING WALL LIGNIN-1 and 2 (At1g31720/MWL-1 and At4g19370/MWL-2) Function Redundantly to Alter Secondary Cell Wall Lignin Content.

Mewalal R, Mizrachi E, Coetzee B, Mansfield SD, Myburg AA.

PLoS One. 2016 Mar 1;11(3):e0150254. doi: 10.1371/journal.pone.0150254. eCollection 2016.


Combined de novo and genome guided assembly and annotation of the Pinus patula juvenile shoot transcriptome.

Visser EA, Wegrzyn JL, Steenkmap ET, Myburg AA, Naidoo S.

BMC Genomics. 2015 Dec 12;16:1057. doi: 10.1186/s12864-015-2277-7.


The Eucalyptus terpene synthase gene family.

Külheim C, Padovan A, Hefer C, Krause ST, Köllner TG, Myburg AA, Degenhardt J, Foley WJ.

BMC Genomics. 2015 Jun 11;16:450. doi: 10.1186/s12864-015-1598-x.


Horsetails Are Ancient Polyploids: Evidence from Equisetum giganteum.

Vanneste K, Sterck L, Myburg AA, Van de Peer Y, Mizrachi E.

Plant Cell. 2015 Jun;27(6):1567-78. doi: 10.1105/tpc.15.00157. Epub 2015 May 22.


Comparative analysis of plant carbohydrate active enZymes and their role in xylogenesis.

Pinard D, Mizrachi E, Hefer CA, Kersting AR, Joubert F, Douglas CJ, Mansfield SD, Myburg AA.

BMC Genomics. 2015 May 22;16:402. doi: 10.1186/s12864-015-1571-8.


Genome-wide mapping of histone H3 lysine 4 trimethylation in Eucalyptus grandis developing xylem.

Hussey SG, Mizrachi E, Groover A, Berger DK, Myburg AA.

BMC Plant Biol. 2015 May 10;15:117. doi: 10.1186/s12870-015-0499-0.


Plant scientists celebrate new woody plant genome.

Strauss SH, Myburg AA.

New Phytol. 2015 Jun;206(4):1185-7. doi: 10.1111/nph.13443. No abstract available.


The Transcriptome and Terpene Profile of Eucalyptus grandis Reveals Mechanisms of Defense Against the Insect Pest, Leptocybe invasa.

Oates CN, Külheim C, Myburg AA, Slippers B, Naidoo S.

Plant Cell Physiol. 2015 Jul;56(7):1418-28. doi: 10.1093/pcp/pcv064. Epub 2015 May 5.


Transcriptome and hormone profiling reveals Eucalyptus grandis defence responses against Chrysoporthe austroafricana.

Mangwanda R, Myburg AA, Naidoo S.

BMC Genomics. 2015 Apr 18;16:319. doi: 10.1186/s12864-015-1529-x.


Explosive tandem and segmental duplications of multigenic families in Eucalyptus grandis.

Li Q, Yu H, Cao PB, Fawal N, Mathé C, Azar S, Cassan-Wang H, Myburg AA, Grima-Pettenati J, Marque C, Teulières C, Dunand C.

Genome Biol Evol. 2015 Mar 13;7(4):1068-81. doi: 10.1093/gbe/evv048.


Genome-wide analysis of the lignin toolbox of Eucalyptus grandis.

Carocha V, Soler M, Hefer C, Cassan-Wang H, Fevereiro P, Myburg AA, Paiva JA, Grima-Pettenati J.

New Phytol. 2015 Jun;206(4):1297-313. doi: 10.1111/nph.13313. Epub 2015 Feb 12.


Genomic patterns of species diversity and divergence in Eucalyptus.

Hudson CJ, Freeman JS, Myburg AA, Potts BM, Vaillancourt RE.

New Phytol. 2015 Jun;206(4):1378-90. doi: 10.1111/nph.13316. Epub 2015 Feb 10.


Comparative interrogation of the developing xylem transcriptomes of two wood-forming species: Populus trichocarpa and Eucalyptus grandis.

Hefer CA, Mizrachi E, Myburg AA, Douglas CJ, Mansfield SD.

New Phytol. 2015 Jun;206(4):1391-405. doi: 10.1111/nph.13277. Epub 2015 Feb 6.


Comprehensive genome-wide analysis of the Aux/IAA gene family in Eucalyptus: evidence for the role of EgrIAA4 in wood formation.

Yu H, Soler M, San Clemente H, Mila I, Paiva JA, Myburg AA, Bouzayen M, Grima-Pettenati J, Cassan-Wang H.

Plant Cell Physiol. 2015 Apr;56(4):700-14. doi: 10.1093/pcp/pcu215. Epub 2015 Jan 9.


Protein domain evolution is associated with reproductive diversification and adaptive radiation in the genus Eucalyptus.

Kersting AR, Mizrachi E, Bornberg-Bauer E, Myburg AA.

New Phytol. 2015 Jun;206(4):1328-36. doi: 10.1111/nph.13211. Epub 2014 Dec 11.


Investigating the molecular underpinnings underlying morphology and changes in carbon partitioning during tension wood formation in Eucalyptus.

Mizrachi E, Maloney VJ, Silberbauer J, Hefer CA, Berger DK, Mansfield SD, Myburg AA.

New Phytol. 2015 Jun;206(4):1351-63. doi: 10.1111/nph.13152. Epub 2014 Nov 12.


Structural, evolutionary and functional analysis of the NAC domain protein family in Eucalyptus.

Hussey SG, Saïdi MN, Hefer CA, Myburg AA, Grima-Pettenati J.

New Phytol. 2015 Jun;206(4):1337-50. doi: 10.1111/nph.13139. Epub 2014 Nov 10.


The floral transcriptome of Eucalyptus grandis.

Vining KJ, Romanel E, Jones RC, Klocko A, Alves-Ferreira M, Hefer CA, Amarasinghe V, Dharmawardhana P, Naithani S, Ranik M, Wesley-Smith J, Solomon L, Jaiswal P, Myburg AA, Strauss SH.

New Phytol. 2015 Jun;206(4):1406-22. doi: 10.1111/nph.13077. Epub 2014 Oct 29.


Genome-wide characterization and expression profiling of the AUXIN RESPONSE FACTOR (ARF) gene family in Eucalyptus grandis.

Yu H, Soler M, Mila I, San Clemente H, Savelli B, Dunand C, Paiva JA, Myburg AA, Bouzayen M, Grima-Pettenati J, Cassan-Wang H.

PLoS One. 2014 Sep 30;9(9):e108906. doi: 10.1371/journal.pone.0108906. eCollection 2014.


Uncovering the defence responses of Eucalyptus to pests and pathogens in the genomics age.

Naidoo S, Külheim C, Zwart L, Mangwanda R, Oates CN, Visser EA, Wilken FE, Mamni TB, Myburg AA.

Tree Physiol. 2014 Sep;34(9):931-43. doi: 10.1093/treephys/tpu075. Review.


The Eucalyptus grandis R2R3-MYB transcription factor family: evidence for woody growth-related evolution and function.

Soler M, Camargo EL, Carocha V, Cassan-Wang H, San Clemente H, Savelli B, Hefer CA, Paiva JA, Myburg AA, Grima-Pettenati J.

New Phytol. 2015 Jun;206(4):1364-77. doi: 10.1111/nph.13039. Epub 2014 Sep 24.


The genome of Eucalyptus grandis.

Myburg AA, Grattapaglia D, Tuskan GA, Hellsten U, Hayes RD, Grimwood J, Jenkins J, Lindquist E, Tice H, Bauer D, Goodstein DM, Dubchak I, Poliakov A, Mizrachi E, Kullan AR, Hussey SG, Pinard D, van der Merwe K, Singh P, van Jaarsveld I, Silva-Junior OB, Togawa RC, Pappas MR, Faria DA, Sansaloni CP, Petroli CD, Yang X, Ranjan P, Tschaplinski TJ, Ye CY, Li T, Sterck L, Vanneste K, Murat F, Soler M, Clemente HS, Saidi N, Cassan-Wang H, Dunand C, Hefer CA, Bornberg-Bauer E, Kersting AR, Vining K, Amarasinghe V, Ranik M, Naithani S, Elser J, Boyd AE, Liston A, Spatafora JW, Dharmwardhana P, Raja R, Sullivan C, Romanel E, Alves-Ferreira M, Külheim C, Foley W, Carocha V, Paiva J, Kudrna D, Brommonschenkel SH, Pasquali G, Byrne M, Rigault P, Tibbits J, Spokevicius A, Jones RC, Steane DA, Vaillancourt RE, Potts BM, Joubert F, Barry K, Pappas GJ, Strauss SH, Jaiswal P, Grima-Pettenati J, Salse J, Van de Peer Y, Rokhsar DS, Schmutz J.

Nature. 2014 Jun 19;510(7505):356-62. doi: 10.1038/nature13308. Epub 2014 Jun 11.


Mapping QTL conferring resistance in maize to gray leaf spot disease caused by Cercospora zeina.

Berger DK, Carstens M, Korsman JN, Middleton F, Kloppers FJ, Tongoona P, Myburg AA.

BMC Genet. 2014 May 22;15:60. doi: 10.1186/1471-2156-15-60.

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