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Items: 47

1.

Feasibility of simple machine learning approaches to support detection of non-glaucomatous visual fields in future automated glaucoma clinics.

Thomas PBM, Chan T, Nixon T, Muthusamy B, White A.

Eye (Lond). 2019 Mar 4. doi: 10.1038/s41433-019-0386-2. [Epub ahead of print]

PMID:
30833668
2.

Exome sequencing reveals a novel splice site variant in HUWE1 gene in patients with suspected Say-Meyer syndrome.

Muthusamy B, Nguyen TT, Bandari AK, Basheer S, Selvan LDN, Chandel D, Manoj J, Gayen S, Seshagiri S, Chandra Girimaji S, Pandey A.

Eur J Med Genet. 2019 Feb 21. pii: S1769-7212(18)30478-6. doi: 10.1016/j.ejmg.2019.02.007. [Epub ahead of print]

3.

Ventriculo-peritoneal shunting is a safe and effective treatment for idiopathic intracranial hypertension.

Bjornson A, Tapply I, Nabbanja E, Lalou AD, Czosnyka M, Czosnyka Z, Muthusamy B, Garnett M.

Br J Neurosurg. 2019 Feb;33(1):62-70. doi: 10.1080/02688697.2018.1538478. Epub 2019 Jan 17.

PMID:
30653369
4.

A Next-Generation Sequencing-Based Molecular Approach to Characterize a Tick Vector in Lyme Disease.

Madugundu AK, Muthusamy B, Sreenivasamurthy SK, Bhavani C, Sharma J, Kumar B, Murthy KR, Ravikumar R, Pandey A.

OMICS. 2018 Aug;22(8):565-574. doi: 10.1089/omi.2018.0089.

PMID:
30106352
5.

[Choroidal Osteoma in a Male Patient - Multimodal Imaging].

Chou M, Chronopoulos A, Muthusamy B, Newman D, Ong JM.

Klin Monbl Augenheilkd. 2017 Nov 8. doi: 10.1055/s-0043-117740. [Epub ahead of print] German. No abstract available.

PMID:
29117607
6.

Cross sectional, qualitative thematic analysis of patient perspectives of disease impact in juvenile idiopathic arthritis-associated uveitis.

Sen ES, Morgan MJ, MacLeod R, Strike H, Hinchcliffe A, Dick AD, Muthusamy B, Ramanan AV.

Pediatr Rheumatol Online J. 2017 Aug 4;15(1):58. doi: 10.1186/s12969-017-0189-6.

7.

Next-Generation Sequencing Reveals Novel Mutations in X-linked Intellectual Disability.

Muthusamy B, Selvan LDN, Nguyen TT, Manoj J, Stawiski EW, Jaiswal BS, Wang W, Raja R, Ramprasad VL, Gupta R, Murugan S, Kadandale JS, Prasad TSK, Reddy K, Peterson A, Pandey A, Seshagiri S, Girimaji SC, Gowda H.

OMICS. 2017 May;21(5):295-303. doi: 10.1089/omi.2017.0009.

8.

Secretome analysis of diarrhea-inducing strains of Escherichia coli.

Nirujogi RS, Muthusamy B, Kim MS, Sathe GJ, Lakshmi PT, Kovbasnjuk ON, Prasad TS, Wade M, Jabbour RE.

Proteomics. 2017 Mar;17(6). doi: 10.1002/pmic.201600299. Epub 2017 Mar 6.

9.

Isolated oculomotor nerve palsy in patients with mild head injury.

Tajsic T, Kolias AG, Das T, Scoffings D, Muthusamy B, Garnett MR, Hutchinson PJ.

Br J Neurosurg. 2017 Feb;31(1):94-95. doi: 10.1080/02688697.2016.1265093. Epub 2016 Dec 7.

PMID:
27927015
10.

Response to: 'Cotton wool spots and migraine: a case series of three patients'.

Svasti-Salee CR, Nixon TR, Muthusamy B.

Eye (Lond). 2016 Dec;30(12):1648-1649. doi: 10.1038/eye.2016.178. Epub 2016 Jul 29. No abstract available.

11.

ShcA Protects against Epithelial-Mesenchymal Transition through Compartmentalized Inhibition of TGF-β-Induced Smad Activation.

Muthusamy BP, Budi EH, Katsuno Y, Lee MK, Smith SM, Mirza AM, Akhurst RJ, Derynck R.

PLoS Biol. 2015 Dec 17;13(12):e1002325. doi: 10.1371/journal.pbio.1002325. eCollection 2015 Dec.

12.

A multi-omic analysis of human naïve CD4+ T cells.

Mitchell CJ, Getnet D, Kim MS, Manda SS, Kumar P, Huang TC, Pinto SM, Nirujogi RS, Iwasaki M, Shaw PG, Wu X, Zhong J, Chaerkady R, Marimuthu A, Muthusamy B, Sahasrabuddhe NA, Raju R, Bowman C, Danilova L, Cutler J, Kelkar DS, Drake CG, Prasad TS, Marchionni L, Murakami PN, Scott AF, Shi L, Thierry-Mieg J, Thierry-Mieg D, Irizarry R, Cope L, Ishihama Y, Wang C, Gowda H, Pandey A.

BMC Syst Biol. 2015 Nov 6;9:75. doi: 10.1186/s12918-015-0225-4.

13.

The insulin response integrates increased TGF-β signaling through Akt-induced enhancement of cell surface delivery of TGF-β receptors.

Budi EH, Muthusamy BP, Derynck R.

Sci Signal. 2015 Sep 29;8(396):ra96. doi: 10.1126/scisignal.aaa9432.

14.

Children with Down syndrome benefit from bifocals as evidenced by increased compliance with spectacle wear.

Adyanthaya R, Isenor S, Muthusamy B, Irsch K, Guyton DL.

J AAPOS. 2014 Oct;18(5):481-4. doi: 10.1016/j.jaapos.2014.07.158. Epub 2014 Sep 26.

PMID:
25263260
15.

Signaling pathway cooperation in TGF-β-induced epithelial-mesenchymal transition.

Derynck R, Muthusamy BP, Saeteurn KY.

Curr Opin Cell Biol. 2014 Dec;31:56-66. doi: 10.1016/j.ceb.2014.09.001. Epub 2014 Sep 18. Review.

16.

Hiding in plain sight: a closer look at posterior cortical atrophy.

Beh SC, Muthusamy B, Calabresi P, Hart J, Zee D, Patel V, Frohman E.

Pract Neurol. 2015 Feb;15(1):5-13. doi: 10.1136/practneurol-2014-000883. Epub 2014 Sep 12. Review.

PMID:
25216669
17.

Annotation of the zebrafish genome through an integrated transcriptomic and proteomic analysis.

Kelkar DS, Provost E, Chaerkady R, Muthusamy B, Manda SS, Subbannayya T, Selvan LD, Wang CH, Datta KK, Woo S, Dwivedi SB, Renuse S, Getnet D, Huang TC, Kim MS, Pinto SM, Mitchell CJ, Madugundu AK, Kumar P, Sharma J, Advani J, Dey G, Balakrishnan L, Syed N, Nanjappa V, Subbannayya Y, Goel R, Prasad TS, Bafna V, Sirdeshmukh R, Gowda H, Wang C, Leach SD, Pandey A.

Mol Cell Proteomics. 2014 Nov;13(11):3184-98. doi: 10.1074/mcp.M114.038299. Epub 2014 Jul 24.

18.

Brain proteomics of Anopheles gambiae.

Dwivedi SB, Muthusamy B, Kumar P, Kim MS, Nirujogi RS, Getnet D, Ahiakonu P, De G, Nair B, Gowda H, Prasad TS, Kumar N, Pandey A, Okulate M.

OMICS. 2014 Jul;18(7):421-37. doi: 10.1089/omi.2014.0007. Epub 2014 Jun 17.

19.

A draft map of the human proteome.

Kim MS, Pinto SM, Getnet D, Nirujogi RS, Manda SS, Chaerkady R, Madugundu AK, Kelkar DS, Isserlin R, Jain S, Thomas JK, Muthusamy B, Leal-Rojas P, Kumar P, Sahasrabuddhe NA, Balakrishnan L, Advani J, George B, Renuse S, Selvan LD, Patil AH, Nanjappa V, Radhakrishnan A, Prasad S, Subbannayya T, Raju R, Kumar M, Sreenivasamurthy SK, Marimuthu A, Sathe GJ, Chavan S, Datta KK, Subbannayya Y, Sahu A, Yelamanchi SD, Jayaram S, Rajagopalan P, Sharma J, Murthy KR, Syed N, Goel R, Khan AA, Ahmad S, Dey G, Mudgal K, Chatterjee A, Huang TC, Zhong J, Wu X, Shaw PG, Freed D, Zahari MS, Mukherjee KK, Shankar S, Mahadevan A, Lam H, Mitchell CJ, Shankar SK, Satishchandra P, Schroeder JT, Sirdeshmukh R, Maitra A, Leach SD, Drake CG, Halushka MK, Prasad TS, Hruban RH, Kerr CL, Bader GD, Iacobuzio-Donahue CA, Gowda H, Pandey A.

Nature. 2014 May 29;509(7502):575-81. doi: 10.1038/nature13302.

20.

Pancreatic Cancer Database: an integrative resource for pancreatic cancer.

Thomas JK, Kim MS, Balakrishnan L, Nanjappa V, Raju R, Marimuthu A, Radhakrishnan A, Muthusamy B, Khan AA, Sakamuri S, Tankala SG, Singal M, Nair B, Sirdeshmukh R, Chatterjee A, Prasad TS, Maitra A, Gowda H, Hruban RH, Pandey A.

Cancer Biol Ther. 2014 Aug;15(8):963-7. doi: 10.4161/cbt.29188. Epub 2014 May 19.

21.

Proteogenomic analysis of pathogenic yeast Cryptococcus neoformans using high resolution mass spectrometry.

Nagarajha Selvan LD, Kaviyil JE, Nirujogi RS, Muthusamy B, Puttamallesh VN, Subbannayya T, Syed N, Radhakrishnan A, Kelkar DS, Ahmad S, Pinto SM, Kumar P, Madugundu AK, Nair B, Chatterjee A, Pandey A, Ravikumar R, Gowda H, Prasad TS.

Clin Proteomics. 2014 Feb 3;11(1):5. doi: 10.1186/1559-0275-11-5.

22.

The sensitivity of the bielschowsky head-tilt test in diagnosing acquired bilateral superior oblique paresis.

Muthusamy B, Irsch K, Peggy Chang HY, Guyton DL.

Am J Ophthalmol. 2014 Apr;157(4):901-907.e2. doi: 10.1016/j.ajo.2014.01.003. Epub 2014 Jan 9.

PMID:
24412122
23.

Plasma Proteome Database as a resource for proteomics research: 2014 update.

Nanjappa V, Thomas JK, Marimuthu A, Muthusamy B, Radhakrishnan A, Sharma R, Ahmad Khan A, Balakrishnan L, Sahasrabuddhe NA, Kumar S, Jhaveri BN, Sheth KV, Kumar Khatana R, Shaw PG, Srikanth SM, Mathur PP, Shankar S, Nagaraja D, Christopher R, Mathivanan S, Raju R, Sirdeshmukh R, Chatterjee A, Simpson RJ, Harsha HC, Pandey A, Prasad TS.

Nucleic Acids Res. 2014 Jan;42(Database issue):D959-65. doi: 10.1093/nar/gkt1251. Epub 2013 Dec 3.

24.

Differentiating bilateral superior oblique paresis from sensory extorsion.

Muthusamy B, Peggy Chang HY, Irsch K, Ying HS, Muthusamy K, Anwar D, Guyton DL.

J AAPOS. 2013 Oct;17(5):471-6. doi: 10.1016/j.jaapos.2013.06.017.

PMID:
24160965
25.

Access guide to human proteinpedia.

Muthusamy B, Thomas JK, Prasad TS, Pandey A.

Curr Protoc Bioinformatics. 2013 Mar;Chapter 1:Unit 1.21. doi: 10.1002/0471250953.bi0121s41.

26.

A Bioinformatics Resource for TWEAK-Fn14 Signaling Pathway.

Bhattacharjee M, Raju R, Radhakrishnan A, Nanjappa V, Muthusamy B, Singh K, Kuppusamy D, Lingala BT, Pan A, Mathur PP, Harsha HC, Prasad TS, Atkins GJ, Pandey A, Chatterjee A.

J Signal Transduct. 2012;2012:376470. doi: 10.1155/2012/376470. Epub 2012 May 9.

27.

A proteogenomic approach to map the proteome of an unsequenced pathogen - Leishmania donovani.

Pawar H, Sahasrabuddhe NA, Renuse S, Keerthikumar S, Sharma J, Kumar GS, Venugopal A, Sekhar NR, Kelkar DS, Nemade H, Khobragade SN, Muthusamy B, Kandasamy K, Harsha HC, Chaerkady R, Patole MS, Pandey A.

Proteomics. 2012 Mar;12(6):832-44. doi: 10.1002/pmic.201100505.

PMID:
22539434
28.

Proteogenomic analysis of Candida glabrata using high resolution mass spectrometry.

Prasad TS, Harsha HC, Keerthikumar S, Sekhar NR, Selvan LD, Kumar P, Pinto SM, Muthusamy B, Subbannayya Y, Renuse S, Chaerkady R, Mathur PP, Ravikumar R, Pandey A.

J Proteome Res. 2012 Jan 1;11(1):247-60. doi: 10.1021/pr200827k. Epub 2011 Dec 13.

PMID:
22129275
29.

Comprehensive proteomic analysis of human bile.

Barbhuiya MA, Sahasrabuddhe NA, Pinto SM, Muthusamy B, Singh TD, Nanjappa V, Keerthikumar S, Delanghe B, Harsha HC, Chaerkady R, Jalaj V, Gupta S, Shrivastav BR, Tiwari PK, Pandey A.

Proteomics. 2011 Dec;11(23):4443-53. doi: 10.1002/pmic.201100197. Epub 2011 Nov 4.

PMID:
22114102
30.

Proteogenomic analysis of Mycobacterium tuberculosis by high resolution mass spectrometry.

Kelkar DS, Kumar D, Kumar P, Balakrishnan L, Muthusamy B, Yadav AK, Shrivastava P, Marimuthu A, Anand S, Sundaram H, Kingsbury R, Harsha HC, Nair B, Prasad TS, Chauhan DS, Katoch K, Katoch VM, Kumar P, Chaerkady R, Ramachandran S, Dash D, Pandey A.

Mol Cell Proteomics. 2011 Dec;10(12):M111.011627. doi: 10.1074/mcp.M111.011445. Epub 2011 Oct 3.

31.

NetSlim: high-confidence curated signaling maps.

Raju R, Nanjappa V, Balakrishnan L, Radhakrishnan A, Thomas JK, Sharma J, Tian M, Palapetta SM, Subbannayya T, Sekhar NR, Muthusamy B, Goel R, Subbannayya Y, Telikicherla D, Bhattacharjee M, Pinto SM, Syed N, Srikanth MS, Sathe GJ, Ahmad S, Chavan SN, Kumar GS, Marimuthu A, Prasad TS, Harsha HC, Rahiman BA, Ohara O, Bader GD, Sujatha Mohan S, Schiemann WP, Pandey A.

Database (Oxford). 2011 Sep 29;2011:bar032. doi: 10.1093/database/bar032. Print 2011.

32.

A proteogenomic analysis of Anopheles gambiae using high-resolution Fourier transform mass spectrometry.

Chaerkady R, Kelkar DS, Muthusamy B, Kandasamy K, Dwivedi SB, Sahasrabuddhe NA, Kim MS, Renuse S, Pinto SM, Sharma R, Pawar H, Sekhar NR, Mohanty AK, Getnet D, Yang Y, Zhong J, Dash AP, MacCallum RM, Delanghe B, Mlambo G, Kumar A, Keshava Prasad TS, Okulate M, Kumar N, Pandey A.

Genome Res. 2011 Nov;21(11):1872-81. doi: 10.1101/gr.127951.111. Epub 2011 Jul 27.

33.

A comprehensive manually curated reaction map of RANKL/RANK-signaling pathway.

Raju R, Balakrishnan L, Nanjappa V, Bhattacharjee M, Getnet D, Muthusamy B, Kurian Thomas J, Sharma J, Rahiman BA, Harsha HC, Shankar S, Prasad TS, Mohan SS, Bader GD, Wani MR, Pandey A.

Database (Oxford). 2011 Jul 8;2011:bar021. doi: 10.1093/database/bar021. Print 2011.

34.

Joubert syndrome presenting with motor delay and oculomotor apraxia.

Gill H, Muthusamy B, Atan D, Williams C, Ellis M.

Case Rep Pediatr. 2011;2011:262641. doi: 10.1155/2011/262641. Epub 2012 Jan 26.

35.

Human protein reference database and human proteinpedia as discovery resources for molecular biotechnology.

Goel R, Muthusamy B, Pandey A, Prasad TS.

Mol Biotechnol. 2011 May;48(1):87-95. doi: 10.1007/s12033-010-9336-8.

PMID:
20927658
36.

SILAC-based quantitative proteomic approach to identify potential biomarkers from the esophageal squamous cell carcinoma secretome.

Kashyap MK, Harsha HC, Renuse S, Pawar H, Sahasrabuddhe NA, Kim MS, Marimuthu A, Keerthikumar S, Muthusamy B, Kandasamy K, Subbannayya Y, Prasad TS, Mahmood R, Chaerkady R, Meltzer SJ, Kumar RV, Rustgi AK, Pandey A.

Cancer Biol Ther. 2010 Oct 15;10(8):796-810. Epub 2010 Oct 15.

37.

Control of protein and sterol trafficking by antagonistic activities of a type IV P-type ATPase and oxysterol binding protein homologue.

Muthusamy BP, Raychaudhuri S, Natarajan P, Abe F, Liu K, Prinz WA, Graham TR.

Mol Biol Cell. 2009 Jun;20(12):2920-31. doi: 10.1091/mbc.E08-10-1036. Epub 2009 Apr 29.

38.

Linking phospholipid flippases to vesicle-mediated protein transport.

Muthusamy BP, Natarajan P, Zhou X, Graham TR.

Biochim Biophys Acta. 2009 Jul;1791(7):612-9. doi: 10.1016/j.bbalip.2009.03.004. Epub 2009 Mar 12. Review.

39.

Genome-wide analysis of sterol-lipid storage and trafficking in Saccharomyces cerevisiae.

Fei W, Alfaro G, Muthusamy BP, Klaassen Z, Graham TR, Yang H, Beh CT.

Eukaryot Cell. 2008 Feb;7(2):401-14. Epub 2007 Dec 21.

40.

Roles for the Drs2p-Cdc50p complex in protein transport and phosphatidylserine asymmetry of the yeast plasma membrane.

Chen S, Wang J, Muthusamy BP, Liu K, Zare S, Andersen RJ, Graham TR.

Traffic. 2006 Nov;7(11):1503-17. Epub 2006 Sep 1.

41.

Plasma Proteome Database as a resource for proteomics research.

Muthusamy B, Hanumanthu G, Suresh S, Rekha B, Srinivas D, Karthick L, Vrushabendra BM, Sharma S, Mishra G, Chatterjee P, Mangala KS, Shivashankar HN, Chandrika KN, Deshpande N, Suresh M, Kannabiran N, Niranjan V, Nalli A, Prasad TS, Arun KS, Reddy R, Chandran S, Jadhav T, Julie D, Mahesh M, John SL, Palvankar K, Sudhir D, Bala P, Rashmi NS, Vishnupriya G, Dhar K, Reshma S, Chaerkady R, Gandhi TK, Harsha HC, Mohan SS, Deshpande KS, Sarker M, Pandey A.

Proteomics. 2005 Aug;5(13):3531-6.

PMID:
16041672
42.

Ovariectomy induces oxidative stress and impairs bone antioxidant system in adult rats.

Muthusami S, Ramachandran I, Muthusamy B, Vasudevan G, Prabhu V, Subramaniam V, Jagadeesan A, Narasimhan S.

Clin Chim Acta. 2005 Oct;360(1-2):81-6.

PMID:
15970279
43.

A manually curated functional annotation of the human X chromosome.

Harsha HC, Suresh S, Amanchy R, Deshpande N, Shanker K, Yatish AJ, Muthusamy B, Vrushabendra BM, Rashmi BP, Chandrika KN, Padma N, Sharma S, Badano JL, Ramya MA, Shivashankar HN, Peri S, Choudhury DR, Kavitha MP, Saravana R, Niranjan V, Gandhi TK, Ghosh N, Chandran S, Menezes M, Joy M, Mohan SS, Katsanis N, Deshpande KS, Raghothama C, Prasad CK, Pandey A.

Nat Genet. 2005 Apr;37(4):331-2. No abstract available.

PMID:
15800640
44.

A proteomic analysis of human hemodialysis fluid.

Molina H, Bunkenborg J, Reddy GH, Muthusamy B, Scheel PJ, Pandey A.

Mol Cell Proteomics. 2005 May;4(5):637-50. Epub 2005 Feb 20.

45.

Human protein reference database as a discovery resource for proteomics.

Peri S, Navarro JD, Kristiansen TZ, Amanchy R, Surendranath V, Muthusamy B, Gandhi TK, Chandrika KN, Deshpande N, Suresh S, Rashmi BP, Shanker K, Padma N, Niranjan V, Harsha HC, Talreja N, Vrushabendra BM, Ramya MA, Yatish AJ, Joy M, Shivashankar HN, Kavitha MP, Menezes M, Choudhury DR, Ghosh N, Saravana R, Chandran S, Mohan S, Jonnalagadda CK, Prasad CK, Kumar-Sinha C, Deshpande KS, Pandey A.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D497-501.

46.

Development of human protein reference database as an initial platform for approaching systems biology in humans.

Peri S, Navarro JD, Amanchy R, Kristiansen TZ, Jonnalagadda CK, Surendranath V, Niranjan V, Muthusamy B, Gandhi TK, Gronborg M, Ibarrola N, Deshpande N, Shanker K, Shivashankar HN, Rashmi BP, Ramya MA, Zhao Z, Chandrika KN, Padma N, Harsha HC, Yatish AJ, Kavitha MP, Menezes M, Choudhury DR, Suresh S, Ghosh N, Saravana R, Chandran S, Krishna S, Joy M, Anand SK, Madavan V, Joseph A, Wong GW, Schiemann WP, Constantinescu SN, Huang L, Khosravi-Far R, Steen H, Tewari M, Ghaffari S, Blobe GC, Dang CV, Garcia JG, Pevsner J, Jensen ON, Roepstorff P, Deshpande KS, Chinnaiyan AM, Hamosh A, Chakravarti A, Pandey A.

Genome Res. 2003 Oct;13(10):2363-71.

47.

A roadmap of the mouse genome.

Muthusamy B, Pandey A.

Trends Genet. 2002 Nov;18(11):553. No abstract available.

PMID:
12414182

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