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Items: 1 to 50 of 80

1.

Does oxygen-enriched air better than normal air improve sympathovagal balance in recreational divers?An open-water study.

Zenske A, Kähler W, Koch A, Oellrich K, Pepper C, Muth T, Schipke JD.

Res Sports Med. 2019 Nov 24:1-16. doi: 10.1080/15438627.2019.1694930. [Epub ahead of print]

PMID:
31762338
2.

A Robust and Universal Metaproteomics Workflow for Research Studies and Routine Diagnostics Within 24 h Using Phenol Extraction, FASP Digest, and the MetaProteomeAnalyzer.

Heyer R, Schallert K, Büdel A, Zoun R, Dorl S, Behne A, Kohrs F, Püttker S, Siewert C, Muth T, Saake G, Reichl U, Benndorf D.

Front Microbiol. 2019 Aug 16;10:1883. doi: 10.3389/fmicb.2019.01883. eCollection 2019.

3.

Stressors and resources related to academic studies and improvements suggested by medical students: a qualitative study.

Weber J, Skodda S, Muth T, Angerer P, Loerbroks A.

BMC Med Educ. 2019 Aug 20;19(1):312. doi: 10.1186/s12909-019-1747-z.

4.

Purple: A Computational Workflow for Strategic Selection of Peptides for Viral Diagnostics Using MS-Based Targeted Proteomics.

Lechner J, Hartkopf F, Hiort P, Nitsche A, Grossegesse M, Doellinger J, Renard BY, Muth T.

Viruses. 2019 Jun 8;11(6). pii: E536. doi: 10.3390/v11060536.

5.

Hydration Status and Perception of Fluid Loss in Male and Female University Rugby Union Players.

Muth T, Pritchett R, Pritchett K, Depaepe J, Blank R.

Int J Exerc Sci. 2019 May 1;12(3):859-870. eCollection 2019.

6.

Green Infrastructure Design Influences Communities of Urban Soil Bacteria.

Joyner JL, Kerwin J, Deeb M, Lozefski G, Prithiviraj B, Paltseva A, McLaughlin J, Groffman P, Cheng Z, Muth TR.

Front Microbiol. 2019 May 16;10:982. doi: 10.3389/fmicb.2019.00982. eCollection 2019.

7.

Medical students' perceptions of stress due to academic studies and its interrelationships with other domains of life: a qualitative study.

Bergmann C, Muth T, Loerbroks A.

Med Educ Online. 2019 Dec;24(1):1603526. doi: 10.1080/10872981.2019.1603526.

8.

Challenges and promise at the interface of metaproteomics and genomics: an overview of recent progress in metaproteogenomic data analysis.

Schiebenhoefer H, Van Den Bossche T, Fuchs S, Renard BY, Muth T, Martens L.

Expert Rev Proteomics. 2019 May;16(5):375-390. doi: 10.1080/14789450.2019.1609944. Epub 2019 Apr 30.

PMID:
31002542
9.

Peptide-to-Protein Summarization: An Important Step for Accurate Quantification in Label-Based Proteomics.

Fischer M, Muth T, Renard BY.

Methods Mol Biol. 2019;1977:159-180. doi: 10.1007/978-1-4939-9232-4_11.

PMID:
30980328
10.

Editorial for Special Issue: Metaproteomics.

Seifert J, Muth T.

Proteomes. 2019 Mar 5;7(1). pii: E9. doi: 10.3390/proteomes7010009.

11.

The Relationship between Personality Traits with Depressive Symptoms and Suicidal Ideation among Medical Students: A Cross-Sectional Study at One Medical School in Germany.

Chow WS, Schmidtke J, Loerbroks A, Muth T, Angerer P.

Int J Environ Res Public Health. 2018 Jul 11;15(7). pii: E1462. doi: 10.3390/ijerph15071462.

12.

A Potential Golden Age to Come-Current Tools, Recent Use Cases, and Future Avenues for De Novo Sequencing in Proteomics.

Muth T, Hartkopf F, Vaudel M, Renard BY.

Proteomics. 2018 Sep;18(18):e1700150. doi: 10.1002/pmic.201700150. Epub 2018 Aug 22. Review.

PMID:
29968278
13.

Development and Validation of the Microbiology for Health Sciences Concept Inventory.

Seitz HM, Horak REA, Howard MW, Kluckhohn Jones LW, Muth T, Parker C, Rediske AP, Whitehurst MM.

J Microbiol Biol Educ. 2017 Oct 30;18(3). pii: 18.3.54. doi: 10.1128/jmbe.v18i3.1322. eCollection 2017.

14.

Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework.

Blank C, Easterly C, Gruening B, Johnson J, Kolmeder CA, Kumar P, May D, Mehta S, Mesuere B, Brown Z, Elias JE, Hervey WJ, McGowan T, Muth T, Nunn B, Rudney J, Tanca A, Griffin TJ, Jagtap PD.

Proteomes. 2018 Jan 31;6(1). pii: E7. doi: 10.3390/proteomes6010007.

15.

MPA Portable: A Stand-Alone Software Package for Analyzing Metaproteome Samples on the Go.

Muth T, Kohrs F, Heyer R, Benndorf D, Rapp E, Reichl U, Martens L, Renard BY.

Anal Chem. 2018 Jan 2;90(1):685-689. doi: 10.1021/acs.analchem.7b03544. Epub 2017 Dec 19.

16.

Elevated Psychosocial Stress at Work in Patients with Systemic Lupus Erythematosus and Rheumatoid Arthritis.

Richter JG, Muth T, Li J, Brinks R, Chehab G, Koch T, Siegrist J, Angerer P, Huscher D, Schneider M.

J Rheumatol. 2018 Feb;45(2):227-234. doi: 10.3899/jrheum.170233. Epub 2017 Nov 15.

PMID:
29142037
17.

Quantification of Agrobacterium tumefaciens C58 attachment to Arabidopsis thaliana roots.

Petrovicheva A, Joyner J, Muth TR.

FEMS Microbiol Lett. 2017 Oct 2;364(18). doi: 10.1093/femsle/fnx158.

PMID:
28922840
18.

T-DNA-genome junctions form early after infection and are influenced by the chromatin state of the host genome.

Shilo S, Tripathi P, Melamed-Bessudo C, Tzfadia O, Muth TR, Levy AA.

PLoS Genet. 2017 Jul 24;13(7):e1006875. doi: 10.1371/journal.pgen.1006875. eCollection 2017 Jul.

19.

Evaluating de novo sequencing in proteomics: already an accurate alternative to database-driven peptide identification?

Muth T, Renard BY.

Brief Bioinform. 2018 Sep 28;19(5):954-970. doi: 10.1093/bib/bbx033.

PMID:
28369237
20.

Student ERI: Psychometric properties of a new brief measure of effort-reward imbalance among university students.

Wege N, Li J, Muth T, Angerer P, Siegrist J.

J Psychosom Res. 2017 Mar;94:64-67. doi: 10.1016/j.jpsychores.2017.01.008. Epub 2017 Jan 19.

PMID:
28183404
21.

Tandem Mass Spectrum Sequencing: An Alternative to Database Search Engines in Shotgun Proteomics.

Muth T, Rapp E, Berven FS, Barsnes H, Vaudel M.

Adv Exp Med Biol. 2016;919:217-226. Review.

PMID:
27975219
22.

The impact of sequence database choice on metaproteomic results in gut microbiota studies.

Tanca A, Palomba A, Fraumene C, Pagnozzi D, Manghina V, Deligios M, Muth T, Rapp E, Martens L, Addis MF, Uzzau S.

Microbiome. 2016 Sep 27;4(1):51.

23.

Metaproteomic data analysis at a glance: advances in computational microbial community proteomics.

Muth T, Renard BY, Martens L.

Expert Rev Proteomics. 2016 Aug;13(8):757-69. doi: 10.1080/14789450.2016.1209418. Epub 2016 Jul 20. Review.

PMID:
27376173
24.

Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics.

Afshinnekoo E, Meydan C, Chowdhury S, Jaroudi D, Boyer C, Bernstein N, Maritz JM, Reeves D, Gandara J, Chhangawala S, Ahsanuddin S, Simmons A, Nessel T, Sundaresh B, Pereira E, Jorgensen E, Kolokotronis SO, Kirchberger N, Garcia I, Gandara D, Dhanraj S, Nawrin T, Saletore Y, Alexander N, Vijay P, Hénaff EM, Zumbo P, Walsh M, O'Mullan GD, Tighe S, Dudley JT, Dunaif A, Ennis S, O'Halloran E, Magalhaes TR, Boone B, Jones AL, Muth TR, Paolantonio KS, Alter E, Schadt EE, Garbarino J, Prill RJ, Carlton JM, Levy S, Mason CE.

Cell Syst. 2015 Jul 29;1(1):97-97.e3. doi: 10.1016/j.cels.2015.07.006. Epub 2015 Jul 29. No abstract available.

25.

Modern Methods for Delineating Metagenomic Complexity.

Afshinnekoo E, Meydan C, Chowdhury S, Jaroudi D, Boyer C, Bernstein N, Maritz JM, Reeves D, Gandara J, Chhangawala S, Ahsanuddin S, Simmons A, Nessel T, Sundaresh B, Pereira E, Jorgensen E, Kolokotronis SO, Kirchberger N, Garcia I, Gandara D, Dhanraj S, Nawrin T, Saletore Y, Alexander N, Vijay P, Hénaff EM, Zumbo P, Walsh M, O'Mullan GD, Tighe S, Dudley JT, Dunaif A, Ennis S, O'Halloran E, Magalhaes TR, Boone B, Jones AL, Muth TR, Paolantonio KS, Alter E, Schadt EE, Garbarino J, Prill RJ, Carlton JM, Levy S, Mason CE.

Cell Syst. 2015 Jul 29;1(1):6-7. doi: 10.1016/j.cels.2015.07.007. Epub 2015 Jul 29. No abstract available.

26.

Mental health among currently enrolled medical students in Germany.

Wege N, Muth T, Li J, Angerer P.

Public Health. 2016 Mar;132:92-100. doi: 10.1016/j.puhe.2015.12.014. Epub 2016 Feb 12.

PMID:
26880490
27.

Single-Dose Study of a Corticotropin-Releasing Factor Receptor-1 Antagonist in Women With 21-Hydroxylase Deficiency.

Turcu AF, Spencer-Segal JL, Farber RH, Luo R, Grigoriadis DE, Ramm CA, Madrigal D, Muth T, O'Brien CF, Auchus RJ.

J Clin Endocrinol Metab. 2016 Mar;101(3):1174-80. doi: 10.1210/jc.2015-3574. Epub 2016 Jan 11.

28.

"Lung packing" in breath hold-diving: An impressive case of pulmo-cardiac interaction.

Schipke JD, Kelm M, Siegmund K, Muth T, Sievers B, Steiner S.

Respir Med Case Rep. 2015 Sep 16;16:120-1. doi: 10.1016/j.rmcr.2015.09.007. eCollection 2015.

29.

Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics.

Afshinnekoo E, Meydan C, Chowdhury S, Jaroudi D, Boyer C, Bernstein N, Maritz JM, Reeves D, Gandara J, Chhangawala S, Ahsanuddin S, Simmons A, Nessel T, Sundaresh B, Pereira E, Jorgensen E, Kolokotronis SO, Kirchberger N, Garcia I, Gandara D, Dhanraj S, Nawrin T, Saletore Y, Alexander N, Vijay P, Hénaff EM, Zumbo P, Walsh M, O'Mullan GD, Tighe S, Dudley JT, Dunaif A, Ennis S, O'Halloran E, Magalhaes TR, Boone B, Jones AL, Muth TR, Paolantonio KS, Alter E, Schadt EE, Garbarino J, Prill RJ, Carlton JM, Levy S, Mason CE.

Cell Syst. 2015 Jul 29;1(1):72-87. Epub 2015 Mar 3.

30.

Colonic metaproteomic signatures of active bacteria and the host in obesity.

Kolmeder CA, Ritari J, Verdam FJ, Muth T, Keskitalo S, Varjosalo M, Fuentes S, Greve JW, Buurman WA, Reichl U, Rapp E, Martens L, Palva A, Salonen A, Rensen SS, de Vos WM.

Proteomics. 2015 Oct;15(20):3544-52. doi: 10.1002/pmic.201500049. Epub 2015 Sep 11.

PMID:
26255997
31.

[Needlestick Injuries to Medical Students].

Siegmann S, Muth T, Kluth W, Hofbauer U, Angerer P, Schwarze S.

Gesundheitswesen. 2016 Jan;78(1):22-7. doi: 10.1055/s-0034-1387716. Epub 2015 Jun 18. German.

PMID:
26086540
32.

Navigating through metaproteomics data: a logbook of database searching.

Muth T, Kolmeder CA, Salojärvi J, Keskitalo S, Varjosalo M, Verdam FJ, Rensen SS, Reichl U, de Vos WM, Rapp E, Martens L.

Proteomics. 2015 Oct;15(20):3439-53. doi: 10.1002/pmic.201400560. Epub 2015 Apr 27.

PMID:
25778831
33.

The MetaProteomeAnalyzer: a powerful open-source software suite for metaproteomics data analysis and interpretation.

Muth T, Behne A, Heyer R, Kohrs F, Benndorf D, Hoffmann M, Lehtevä M, Reichl U, Martens L, Rapp E.

J Proteome Res. 2015 Mar 6;14(3):1557-65. doi: 10.1021/pr501246w. Epub 2015 Feb 23.

PMID:
25660940
34.

Viewing the proteome: how to visualize proteomics data?

Oveland E, Muth T, Rapp E, Martens L, Berven FS, Barsnes H.

Proteomics. 2015 Apr;15(8):1341-55. doi: 10.1002/pmic.201400412. Epub 2015 Jan 21. Review.

PMID:
25504833
35.

Auranofin and related heterometallic gold(I)-thiolates as potent inhibitors of methicillin-resistant Staphylococcus aureus bacterial strains.

Hokai Y, Jurkowicz B, Fernández-Gallardo J, Zakirkhodjaev N, Sanaú M, Muth TR, Contel M.

J Inorg Biochem. 2014 Sep;138:81-88. doi: 10.1016/j.jinorgbio.2014.05.008. Epub 2014 May 28.

36.

Undergraduate urban metagenomics research module.

Muth TR, McEntee CM.

J Microbiol Biol Educ. 2014 May 1;15(1):38-40. doi: 10.1128/jmbe.v15i1.645. eCollection 2014 May. No abstract available.

37.

Comparative performance of four methods for high-throughput glycosylation analysis of immunoglobulin G in genetic and epidemiological research.

Huffman JE, Pučić-Baković M, Klarić L, Hennig R, Selman MH, Vučković F, Novokmet M, Krištić J, Borowiak M, Muth T, Polašek O, Razdorov G, Gornik O, Plomp R, Theodoratou E, Wright AF, Rudan I, Hayward C, Campbell H, Deelder AM, Reichl U, Aulchenko YS, Rapp E, Wuhrer M, Lauc G.

Mol Cell Proteomics. 2014 Jun;13(6):1598-610. doi: 10.1074/mcp.M113.037465. Epub 2014 Apr 9.

38.

Sample prefractionation with liquid isoelectric focusing enables in depth microbial metaproteome analysis of mesophilic and thermophilic biogas plants.

Kohrs F, Heyer R, Magnussen A, Benndorf D, Muth T, Behne A, Rapp E, Kausmann R, Heiermann M, Klocke M, Reichl U.

Anaerobe. 2014 Oct;29:59-67. doi: 10.1016/j.anaerobe.2013.11.009. Epub 2013 Dec 3.

PMID:
24309213
39.

DeNovoGUI: an open source graphical user interface for de novo sequencing of tandem mass spectra.

Muth T, Weilnböck L, Rapp E, Huber CG, Martens L, Vaudel M, Barsnes H.

J Proteome Res. 2014 Feb 7;13(2):1143-6. doi: 10.1021/pr4008078. Epub 2014 Jan 7.

40.
41.

ProteoCloud: a full-featured open source proteomics cloud computing pipeline.

Muth T, Peters J, Blackburn J, Rapp E, Martens L.

J Proteomics. 2013 Aug 2;88:104-8. doi: 10.1016/j.jprot.2012.12.026. Epub 2013 Jan 8.

PMID:
23305951
42.

Searching for a needle in a stack of needles: challenges in metaproteomics data analysis.

Muth T, Benndorf D, Reichl U, Rapp E, Martens L.

Mol Biosyst. 2013 Apr 5;9(4):578-85. doi: 10.1039/c2mb25415h. Review.

PMID:
23238088
43.

Recumbent cross-training is a feasible and safe mode of physical activity for significantly motor-impaired adults with cerebral palsy.

Peterson MD, Lukasik L, Muth T, Esposito P, Haapala H, Gordon PM, IglayReger H, Hurvitz EA.

Arch Phys Med Rehabil. 2013 Feb;94(2):401-7. doi: 10.1016/j.apmr.2012.09.027. Epub 2012 Oct 10.

44.

Safety of deep apneic diving.

Schipke JD, Muth T, Cleveland S.

Diving Hyperb Med. 2012 Jun;42(2):105-6; author reply 106-8. No abstract available.

PMID:
22828822
45.

Luminescent di- and polynuclear organometallic gold(I)-metal (Au2, {Au2Ag}n and {Au2Cu}n) compounds containing bidentate phosphanes as active antimicrobial agents.

Frik M, Jiménez J, Gracia I, Falvello LR, Abi-Habib S, Suriel K, Muth TR, Contel M.

Chemistry. 2012 Mar 19;18(12):3659-74. doi: 10.1002/chem.201103145. Epub 2012 Feb 14.

46.

JDet: interactive calculation and visualization of function-related conservation patterns in multiple sequence alignments and structures.

Muth T, García-Martín JA, Rausell A, Juan D, Valencia A, Pazos F.

Bioinformatics. 2012 Feb 15;28(4):584-6. doi: 10.1093/bioinformatics/btr688. Epub 2011 Dec 9.

PMID:
22171333
47.

XTandem Parser: an open-source library to parse and analyse X!Tandem MS/MS search results.

Muth T, Vaudel M, Barsnes H, Martens L, Sickmann A.

Proteomics. 2010 Apr;10(7):1522-4. doi: 10.1002/pmic.200900759. Erratum in: Proteomics. 2010 Jul;10(13):2560.

PMID:
20140905
48.

jTraqX: a free, platform independent tool for isobaric tag quantitation at the protein level.

Muth T, Keller D, Puetz SM, Martens L, Sickmann A, Boehm AM.

Proteomics. 2010 Mar;10(6):1223-5. doi: 10.1002/pmic.200900374.

PMID:
20058250
49.

ms_lims, a simple yet powerful open source laboratory information management system for MS-driven proteomics.

Helsens K, Colaert N, Barsnes H, Muth T, Flikka K, Staes A, Timmerman E, Wortelkamp S, Sickmann A, Vandekerckhove J, Gevaert K, Martens L.

Proteomics. 2010 Mar;10(6):1261-4. doi: 10.1002/pmic.200900409. Erratum in: Proteomics.2010 Jul;10(13):2560.

PMID:
20058248
50.

Esophageal pressure method and impulse oscillometry to assess mechanical properties of the respiratory system in healthy men.

Galetke W, Randerath WJ, Feier C, Muth T, Borsch-Galetke E.

Med Sci Monit. 2009 Aug;15(8):CR429-35.

PMID:
19644421

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