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Items: 28

1.

Transposable elements contribute to fungal genes and impact fungal lifestyle.

Muszewska A, Steczkiewicz K, Stepniewska-Dziubinska M, Ginalski K.

Sci Rep. 2019 Mar 13;9(1):4307. doi: 10.1038/s41598-019-40965-0.

2.

Global pentapeptide statistics are far away from expected distributions.

Poznański J, Topiński J, Muszewska A, Dębski KJ, Hoffman-Sommer M, Pawłowski K, Grynberg M.

Sci Rep. 2018 Oct 11;8(1):15178. doi: 10.1038/s41598-018-33433-8.

3.

Locus-aware decomposition of gene trees with respect to polytomous species trees.

Ciach MA, Muszewska A, Górecki P.

Algorithms Mol Biol. 2018 Jun 4;13:11. doi: 10.1186/s13015-018-0128-1. eCollection 2018.

4.

Phylogenetic and Phylogenomic Definition of Rhizopus Species.

Gryganskyi AP, Golan J, Dolatabadi S, Mondo S, Robb S, Idnurm A, Muszewska A, Steczkiewicz K, Masonjones S, Liao HL, Gajdeczka MT, Anike F, Vuek A, Anishchenko IM, Voigt K, de Hoog GS, Smith ME, Heitman J, Vilgalys R, Stajich JE.

G3 (Bethesda). 2018 May 31;8(6):2007-2018. doi: 10.1534/g3.118.200235.

5.

A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae).

Schoville SD, Chen YH, Andersson MN, Benoit JB, Bhandari A, Bowsher JH, Brevik K, Cappelle K, Chen MM, Childers AK, Childers C, Christiaens O, Clements J, Didion EM, Elpidina EN, Engsontia P, Friedrich M, García-Robles I, Gibbs RA, Goswami C, Grapputo A, Gruden K, Grynberg M, Henrissat B, Jennings EC, Jones JW, Kalsi M, Khan SA, Kumar A, Li F, Lombard V, Ma X, Martynov A, Miller NJ, Mitchell RF, Munoz-Torres M, Muszewska A, Oppert B, Palli SR, Panfilio KA, Pauchet Y, Perkin LC, Petek M, Poelchau MF, Record É, Rinehart JP, Robertson HM, Rosendale AJ, Ruiz-Arroyo VM, Smagghe G, Szendrei Z, Thomas GWC, Torson AS, Vargas Jentzsch IM, Weirauch MT, Yates AD, Yocum GD, Yoon JS, Richards S.

Sci Rep. 2018 Jan 31;8(1):1931. doi: 10.1038/s41598-018-20154-1.

6.

Analysis of Transposable Elements in Coccidioides Species.

Kirkland TN, Muszewska A, Stajich JE.

J Fungi (Basel). 2018 Jan 19;4(1). pii: E13. doi: 10.3390/jof4010013.

7.

Diversity of Cell Wall Related Proteins in Human Pathogenic Fungi.

Muszewska A, Piłsyk S, Perlińska-Lenart U, Kruszewska JS.

J Fungi (Basel). 2017 Dec 29;4(1). pii: E6. doi: 10.3390/jof4010006.

8.

Cut-and-Paste Transposons in Fungi with Diverse Lifestyles.

Muszewska A, Steczkiewicz K, Stepniewska-Dziubinska M, Ginalski K.

Genome Biol Evol. 2017 Dec 1;9(12):3463-3477. doi: 10.1093/gbe/evx261.

9.

Fungal lifestyle reflected in serine protease repertoire.

Muszewska A, Stepniewska-Dziubinska MM, Steczkiewicz K, Pawlowska J, Dziedzic A, Ginalski K.

Sci Rep. 2017 Aug 22;7(1):9147. doi: 10.1038/s41598-017-09644-w.

10.

Exploring the genomic diversity of black yeasts and relatives (Chaetothyriales, Ascomycota).

Teixeira MM, Moreno LF, Stielow BJ, Muszewska A, Hainaut M, Gonzaga L, Abouelleil A, Patané JS, Priest M, Souza R, Young S, Ferreira KS, Zeng Q, da Cunha MM, Gladki A, Barker B, Vicente VA, de Souza EM, Almeida S, Henrissat B, Vasconcelos AT, Deng S, Voglmayr H, Moussa TA, Gorbushina A, Felipe MS, Cuomo CA, de Hoog GS.

Stud Mycol. 2017 Mar;86:1-28. doi: 10.1016/j.simyco.2017.01.001. Epub 2017 Jan 27.

11.

Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.

Kotliński M, Knizewski L, Muszewska A, Rutowicz K, Lirski M, Schmidt A, Baroux C, Ginalski K, Jerzmanowski A.

Plant Physiol. 2017 May;174(1):27-34. doi: 10.1104/pp.16.00214. Epub 2017 Mar 15.

12.

Phosphorylation of spore coat proteins by a family of atypical protein kinases.

Nguyen KB, Sreelatha A, Durrant ES, Lopez-Garrido J, Muszewska A, Dudkiewicz M, Grynberg M, Yee S, Pogliano K, Tomchick DR, Pawłowski K, Dixon JE, Tagliabracci VS.

Proc Natl Acad Sci U S A. 2016 Jun 21;113(25):E3482-91. doi: 10.1073/pnas.1605917113. Epub 2016 May 16.

13.

Preliminary studies on the evolution of carbon assimilation abilities within Mucorales.

Pawłowska J, Aleksandrzak-Piekarczyk T, Banach A, Kiersztyn B, Muszewska A, Serewa L, Szatraj K, Wrzosek M.

Fungal Biol. 2016 May;120(5):752-63. doi: 10.1016/j.funbio.2016.02.004. Epub 2016 Feb 18.

PMID:
27109371
14.

FAM46 proteins are novel eukaryotic non-canonical poly(A) polymerases.

Kuchta K, Muszewska A, Knizewski L, Steczkiewicz K, Wyrwicz LS, Pawlowski K, Rychlewski L, Ginalski K.

Nucleic Acids Res. 2016 May 5;44(8):3534-48. doi: 10.1093/nar/gkw222. Epub 2016 Apr 7.

15.

A Specialized Histone H1 Variant Is Required for Adaptive Responses to Complex Abiotic Stress and Related DNA Methylation in Arabidopsis.

Rutowicz K, Puzio M, Halibart-Puzio J, Lirski M, Kotliński M, Kroteń MA, Knizewski L, Lange B, Muszewska A, Śniegowska-Świerk K, Kościelniak J, Iwanicka-Nowicka R, Buza K, Janowiak F, Żmuda K, Jõesaar I, Laskowska-Kaszub K, Fogtman A, Kollist H, Zielenkiewicz P, Tiuryn J, Siedlecki P, Swiezewski S, Ginalski K, Koblowska M, Archacki R, Wilczynski B, Rapacz M, Jerzmanowski A.

Plant Physiol. 2015 Nov;169(3):2080-101. doi: 10.1104/pp.15.00493. Epub 2015 Sep 8.

16.

Biology, systematics, and clinical manifestations of Zygomycota infections.

Muszewska A, Pawłowska J, Krzyściak P.

Eur J Clin Microbiol Infect Dis. 2014 Aug;33(8):1273-87. doi: 10.1007/s10096-014-2076-0. Epub 2014 Mar 11. Review.

17.

The RNase H-like superfamily: new members, comparative structural analysis and evolutionary classification.

Majorek KA, Dunin-Horkawicz S, Steczkiewicz K, Muszewska A, Nowotny M, Ginalski K, Bujnicki JM.

Nucleic Acids Res. 2014 Apr;42(7):4160-79. doi: 10.1093/nar/gkt1414. Epub 2014 Jan 23.

18.

DIRS and Ngaro Retrotransposons in Fungi.

Muszewska A, Steczkiewicz K, Ginalski K.

PLoS One. 2013 Sep 25;8(9):e76319. doi: 10.1371/journal.pone.0076319. eCollection 2013.

19.

Identification of a novel human mitochondrial endo-/exonuclease Ddk1/c20orf72 necessary for maintenance of proper 7S DNA levels.

Szczesny RJ, Hejnowicz MS, Steczkiewicz K, Muszewska A, Borowski LS, Ginalski K, Dziembowski A.

Nucleic Acids Res. 2013 Mar 1;41(5):3144-61. doi: 10.1093/nar/gkt029. Epub 2013 Jan 28.

20.

Sequence, structure and functional diversity of PD-(D/E)XK phosphodiesterase superfamily.

Steczkiewicz K, Muszewska A, Knizewski L, Rychlewski L, Ginalski K.

Nucleic Acids Res. 2012 Aug;40(15):7016-45. doi: 10.1093/nar/gks382. Epub 2012 May 25.

21.

Novel AlkB dioxygenases--alternative models for in silico and in vivo studies.

Mielecki D, Zugaj DŁ, Muszewska A, Piwowarski J, Chojnacka A, Mielecki M, Nieminuszczy J, Grynberg M, Grzesiuk E.

PLoS One. 2012;7(1):e30588. doi: 10.1371/journal.pone.0030588. Epub 2012 Jan 24.

22.

LTR retrotransposons in fungi.

Muszewska A, Hoffman-Sommer M, Grynberg M.

PLoS One. 2011;6(12):e29425. doi: 10.1371/journal.pone.0029425. Epub 2011 Dec 29.

23.

Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis.

Desjardins CA, Champion MD, Holder JW, Muszewska A, Goldberg J, Bailão AM, Brigido MM, Ferreira ME, Garcia AM, Grynberg M, Gujja S, Heiman DI, Henn MR, Kodira CD, León-Narváez H, Longo LV, Ma LJ, Malavazi I, Matsuo AL, Morais FV, Pereira M, Rodríguez-Brito S, Sakthikumar S, Salem-Izacc SM, Sykes SM, Teixeira MM, Vallejo MC, Walter ME, Yandava C, Young S, Zeng Q, Zucker J, Felipe MS, Goldman GH, Haas BJ, McEwen JG, Nino-Vega G, Puccia R, San-Blas G, Soares CM, Birren BW, Cuomo CA.

PLoS Genet. 2011 Oct;7(10):e1002345. doi: 10.1371/journal.pgen.1002345. Epub 2011 Oct 27.

24.

Independent subtilases expansions in fungi associated with animals.

Muszewska A, Taylor JW, Szczesny P, Grynberg M.

Mol Biol Evol. 2011 Dec;28(12):3395-404. doi: 10.1093/molbev/msr176. Epub 2011 Jul 4.

25.

Extending the aerolysin family: from bacteria to vertebrates.

Szczesny P, Iacovache I, Muszewska A, Ginalski K, van der Goot FG, Grynberg M.

PLoS One. 2011;6(6):e20349. doi: 10.1371/journal.pone.0020349. Epub 2011 Jun 8.

26.

A widespread peroxiredoxin-like domain present in tumor suppression- and progression-implicated proteins.

Pawłowski K, Muszewska A, Lenart A, Szczepińska T, Godzik A, Grynberg M.

BMC Genomics. 2010 Oct 21;11:590. doi: 10.1186/1471-2164-11-590.

27.

Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives.

Sharpton TJ, Stajich JE, Rounsley SD, Gardner MJ, Wortman JR, Jordar VS, Maiti R, Kodira CD, Neafsey DE, Zeng Q, Hung CY, McMahan C, Muszewska A, Grynberg M, Mandel MA, Kellner EM, Barker BM, Galgiani JN, Orbach MJ, Kirkland TN, Cole GT, Henn MR, Birren BW, Taylor JW.

Genome Res. 2009 Oct;19(10):1722-31. doi: 10.1101/gr.087551.108. Epub 2009 Aug 28.

28.

Laboratory trials to infect insects and nematodes by some acaropathogenic Hirsutella strains (Mycota: Clavicipitaceous anamorphs).

Bałazy S, Wrzosek M, Sosnowska D, Tkaczuk C, Muszewska A.

J Invertebr Pathol. 2008 Feb;97(2):103-13. Epub 2007 Aug 28.

PMID:
17920621

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