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Items: 1 to 50 of 54

1.

Whole-Genome Single-Nucleotide Polymorphism (SNP) Analysis Applied Directly to Stool for Genotyping Shiga Toxin-Producing Escherichia coli: an Advanced Molecular Detection Method for Foodborne Disease Surveillance and Outbreak Tracking.

Singh N, Lapierre P, Quinlan TM, Halse TA, Wirth S, Dickinson MC, Lasek-Nesselquist E, Musser KA.

J Clin Microbiol. 2019 Jun 25;57(7). pii: e00307-19. doi: 10.1128/JCM.00307-19. Print 2019 Jul.

PMID:
31068414
2.

Neonatal Conjunctivitis Caused by Neisseria meningitidis US Urethritis Clade, New York, USA, August 2017.

Kretz CB, Bergeron G, Aldrich M, Bloch D, Del Rosso PE, Halse TA, Ostrowsky B, Liu Q, Gonzalez E, Omoregie E, Chicaiza L, Zayas G, Tha B, Liang A, Wang JC, Levi M, Hughes S, Musser KA, Weiss D, Rakeman JL.

Emerg Infect Dis. 2019 May;25(5):972-975. doi: 10.3201/eid2505.181631.

3.

Revised Interpretation of the Hain Lifescience GenoType MTBC To Differentiate Mycobacterium canettii and Members of the Mycobacterium tuberculosis Complex.

Loiseau C, Brites D, Moser I, Coll F, Pourcel C, Robbe-Austerman S, Escuyer V, Musser KA, Peacock SJ, Feuerriegel S, Kohl TA, Niemann S, Gagneux S, Köser CU.

Antimicrob Agents Chemother. 2019 May 24;63(6). pii: e00159-19. doi: 10.1128/AAC.00159-19. Print 2019 Jun.

4.

Investigation of a Cluster of Sphingomonas koreensis Infections.

Johnson RC, Deming C, Conlan S, Zellmer CJ, Michelin AV, Lee-Lin S, Thomas PJ, Park M, Weingarten RA, Less J, Dekker JP, Frank KM, Musser KA, McQuiston JR, Henderson DK, Lau AF, Palmore TN, Segre JA.

N Engl J Med. 2018 Dec 27;379(26):2529-2539. doi: 10.1056/NEJMoa1803238.

5.

Insights into the long-term persistence of Legionella in facilities from whole-genome sequencing.

Wells M, Lasek-Nesselquist E, Schoonmaker-Bopp D, Baker D, Thompson L, Wroblewski D, Nazarian E, Lapierre P, Musser KA.

Infect Genet Evol. 2018 Nov;65:200-209. doi: 10.1016/j.meegid.2018.07.040. Epub 2018 Jul 31.

PMID:
30075256
6.

Notes from the Field: Nontuberculous Mycobacteria Infections in U.S. Medical Tourists Associated with Plastic Surgery - Dominican Republic, 2017.

Gaines J, Poy J, Musser KA, Benowitz I, Leung V, Carothers B, Kauerauf J, Mollon N, Duwell M, Henschel K, De Jesus A, Head SK, Lee K, Arboleda N, Esposito DH.

MMWR Morb Mortal Wkly Rep. 2018 Mar 30;67(12):369-370. doi: 10.15585/mmwr.mm6712a5. No abstract available.

7.

Legionnaires' Disease Outbreak Caused by Endemic Strain of Legionella pneumophila, New York, New York, USA, 2015.

Lapierre P, Nazarian E, Zhu Y, Wroblewski D, Saylors A, Passaretti T, Hughes S, Tran A, Lin Y, Kornblum J, Morrison SS, Mercante JW, Fitzhenry R, Weiss D, Raphael BH, Varma JK, Zucker HA, Rakeman JL, Musser KA.

Emerg Infect Dis. 2017 Nov;23(11):1784-1791. doi: 10.3201/eid2311.170308.

8.

Neisseria dumasiana sp. nov. from human sputum and a dog's mouth.

Wroblewski D, Cole J, McGinnis J, Perez M, Wilson H, Mingle LA, Musser KA, Wolfgang WJ.

Int J Syst Evol Microbiol. 2017 Nov;67(11):4304-4310. doi: 10.1099/ijsem.0.002148. Epub 2017 Sep 21.

PMID:
28933320
9.

Comprehensive Whole-Genome Sequencing and Reporting of Drug Resistance Profiles on Clinical Cases of Mycobacterium tuberculosis in New York State.

Shea J, Halse TA, Lapierre P, Shudt M, Kohlerschmidt D, Van Roey P, Limberger R, Taylor J, Escuyer V, Musser KA.

J Clin Microbiol. 2017 Jun;55(6):1871-1882. doi: 10.1128/JCM.00298-17. Epub 2017 Apr 5.

10.

Implementing the Bruker MALDI Biotyper in the Public Health Laboratory for C. botulinum Neurotoxin Detection.

Perry MJ, Centurioni DA, Davis SW, Hannett GE, Musser KA, Egan CT.

Toxins (Basel). 2017 Mar 9;9(3). pii: E94. doi: 10.3390/toxins9030094.

11.

Detection of Borrelia miyamotoi and other tick-borne pathogens in human clinical specimens and Ixodes scapularis ticks in New York State, 2012-2015.

Wroblewski D, Gebhardt L, Prusinski MA, Meehan LJ, Halse TA, Musser KA.

Ticks Tick Borne Dis. 2017 Mar;8(3):407-411. doi: 10.1016/j.ttbdis.2017.01.004. Epub 2017 Jan 16.

PMID:
28131594
12.

Correction for Shewmaker et al., Evaluation of Methods for Identification and Determination of the Taxonomic Status of Strains Belonging to the Streptococcus porcinus-Streptococcus pseudoporcinus Complex Isolated from Animal, Human, and Dairy Sources.

Shewmaker PL, Steigerwalt AG, Whitney AM, Morey RE, Graziano JC, Facklam RR, Musser KA, Merquior VL, Teixeira LM.

J Clin Microbiol. 2016 Dec 28;55(1):345. doi: 10.1128/JCM.02149-16. Print 2017 Jan. No abstract available.

13.

Performance of the G4 Xpert® MTB/RIF assay for the detection of Mycobacterium tuberculosis and rifampin resistance: a retrospective case-control study of analytical and clinical samples from high- and low-tuberculosis prevalence settings.

Dharan NJ, Blakemore R, Sloutsky A, Kaur D, Alexander RC, Ghajar M, Musser KA, Escuyer VE, Rowlinson MC, Crowe S, Laniado-Laborin R, Valli E, Nabeta P, Johnson P, Alland D.

BMC Infect Dis. 2016 Dec 20;16(1):764.

14.

Implementation of Salmonella serotype determination using pulsed-field gel electrophoresis in a state public health laboratory.

Bopp DJ, Baker DJ, Thompson L, Saylors A, Root TP, Armstrong L, Mitchell K, Dumas NB, Musser KA.

Diagn Microbiol Infect Dis. 2016 Aug;85(4):416-8. doi: 10.1016/j.diagmicrobio.2016.04.023. Epub 2016 May 5.

PMID:
27220605
15.

Draft Genome Sequence of Branchiibius sp. NY16-3462-2, Isolated from a Mixed Clinical Sample.

Lapierre P, Halse TA, Shea J, Escuyer VE, Musser KA.

Genome Announc. 2016 May 12;4(3). pii: e00368-16. doi: 10.1128/genomeA.00368-16.

16.

Genomic Resolution of Outbreak-Associated Legionella pneumophila Serogroup 1 Isolates from New York State.

Raphael BH, Baker DJ, Nazarian E, Lapierre P, Bopp D, Kozak-Muiznieks NA, Morrison SS, Lucas CE, Mercante JW, Musser KA, Winchell JM.

Appl Environ Microbiol. 2016 May 31;82(12):3582-3590. doi: 10.1128/AEM.00362-16. Print 2016 Jun 15.

17.

Rapid prediction of inducible clarithromycin resistance in Mycobacterium abscessus.

Zhu YC, Mitchell KK, Nazarian EJ, Escuyer VE, Musser KA.

Mol Cell Probes. 2015 Dec;29(6):514-516. doi: 10.1016/j.mcp.2015.08.007. Epub 2015 Sep 1.

PMID:
26334290
18.

Paracoccus sanguinis sp. nov., isolated from clinical specimens of New York State patients.

McGinnis JM, Cole JA, Dickinson MC, Mingle LA, Lapierre P, Musser KA, Wolfgang WJ.

Int J Syst Evol Microbiol. 2015 Jun;65(Pt 6):1877-82. doi: 10.1099/ijs.0.000193. Epub 2015 Mar 19.

PMID:
25792366
19.

Two cases of adult botulism caused by botulinum neurotoxin producing Clostridium baratii.

Hannett GE, Schaffzin JK, Davis SW, Fage MP, Schoonmaker-Bopp D, Dumas NB, Musser KA, Egan C.

Anaerobe. 2014 Dec;30:178-180. doi: 10.1016/j.anaerobe.2014.10.005. Epub 2014 Oct 18.

PMID:
25463969
20.

Rapid whole-genome sequencing for surveillance of Salmonella enterica serovar enteritidis.

den Bakker HC, Allard MW, Bopp D, Brown EW, Fontana J, Iqbal Z, Kinney A, Limberger R, Musser KA, Shudt M, Strain E, Wiedmann M, Wolfgang WJ.

Emerg Infect Dis. 2014 Aug;20(8):1306-14. doi: 10.3201/eid2008.131399.

21.

Detection of Mycobacterium avium complex DNA directly in clinical respiratory specimens: opportunities for improved turn-around time and cost savings.

Tran AC, Halse TA, Escuyer VE, Musser KA.

Diagn Microbiol Infect Dis. 2014 May;79(1):43-8. doi: 10.1016/j.diagmicrobio.2014.01.019. Epub 2014 Jan 30.

PMID:
24612561
22.

Postmortem diagnosis of invasive meningococcal disease.

Ridpath AD, Halse TA, Musser KA, Wroblewski D, Paddock CD, Shieh WJ, Pasquale-Styles M, Scordi-Bello I, Del Rosso PE, Weiss D.

Emerg Infect Dis. 2014 Mar;20(3):453-5. doi: 10.3201/eid2003.131245.

23.

Premarket evaluations of the IMDx C. difficile for Abbott m2000 Assay and the BD Max Cdiff Assay.

Stellrecht KA, Espino AA, Maceira VP, Nattanmai SM, Butt SA, Wroblewski D, Hannett GE, Musser KA.

J Clin Microbiol. 2014 May;52(5):1423-8. doi: 10.1128/JCM.03293-13. Epub 2014 Feb 19.

24.

Ground beef recall associated with non-O157 Shiga toxin-producing Escherichia coli, United States.

Robbins A, Anand M, Nicholas DC, Egan JS, Musser KA, Giguere S, Prince H, Beaufait HE, Sears SD, Borda J, Dietz D, Collaro T, Evans P, Seys SA, Kissler BW.

Emerg Infect Dis. 2014 Jan;20(1):165-7. doi: 10.3201/eid2001.130915. No abstract available.

25.

Pertactin-negative variants of Bordetella pertussis in New York State: a retrospective analysis, 2004-2013.

Quinlan T, Musser KA, Currenti SA, Zansky SM, Halse TA.

Mol Cell Probes. 2014 Aug;28(4):138-40. doi: 10.1016/j.mcp.2013.12.003. Epub 2013 Dec 21.

PMID:
24365130
26.

Hazenella coriacea gen. nov., sp. nov., isolated from clinical specimens.

Buss SN, Cole JA, Hannett GE, Nazarian EJ, Nazarian L, Coorevits A, Van Landschoot A, De Vos P, Schumann P, Musser KA, Wolfgang WJ.

Int J Syst Evol Microbiol. 2013 Nov;63(Pt 11):4087-93. doi: 10.1099/ijs.0.050914-0. Epub 2013 May 31.

PMID:
23728377
27.

Utilization of a real-time PCR approach for Haemophilus influenzae serotype determination as an alternative to the slide agglutination test.

Wroblewski D, Halse TA, Hayes J, Kohlerschmidt D, Musser KA.

Mol Cell Probes. 2013 Apr;27(2):86-9. doi: 10.1016/j.mcp.2012.11.003. Epub 2012 Nov 26.

PMID:
23195602
28.

Enhanced identification and characterization of non-O157 Shiga toxin-producing Escherichia coli: a six-year study.

Mingle LA, Garcia DL, Root TP, Halse TA, Quinlan TM, Armstrong LR, Chiefari AK, Schoonmaker-Bopp DJ, Dumas NB, Limberger RJ, Musser KA.

Foodborne Pathog Dis. 2012 Nov;9(11):1028-36. doi: 10.1089/fpd.2012.1202. Epub 2012 Sep 25.

PMID:
23009170
29.

Real-time PCR and pyrosequencing for differentiation of medically relevant Bartonella species.

Buss SN, Gebhardt LL, Musser KA.

J Microbiol Methods. 2012 Nov;91(2):252-6. doi: 10.1016/j.mimet.2012.08.014. Epub 2012 Sep 1.

PMID:
22960689
30.

Evaluation of methods for identification and determination of the taxonomic status of strains belonging to the Streptococcus porcinus-Streptococcus pseudoporcinus complex isolated from animal, human, and dairy sources.

Shewmaker PL, Steigerwalt AG, Whitney AM, Morey RE, Graziano JC, Facklam RR, Musser KA, Merquior VL, Teixeira LM.

J Clin Microbiol. 2012 Nov;50(11):3591-7. doi: 10.1128/JCM.01481-12. Epub 2012 Aug 29. Erratum in: J Clin Microbiol. 2016 Dec 28;55(1):345.

31.

Neisseria oralis sp. nov., isolated from healthy gingival plaque and clinical samples.

Wolfgang WJ, Passaretti TV, Jose R, Cole J, Coorevits A, Carpenter AN, Jose S, Van Landschoot A, Izard J, Kohlerschmidt DJ, Vandamme P, Dewhirst FE, Fisher MA, Musser KA.

Int J Syst Evol Microbiol. 2013 Apr;63(Pt 4):1323-8. doi: 10.1099/ijs.0.041731-0. Epub 2012 Jul 13.

32.

Clinical and laboratory characteristics of Clostridium difficile infection in patients with discordant diagnostic test results.

Kaltsas A, Simon M, Unruh LH, Son C, Wroblewski D, Musser KA, Sepkowitz K, Babady NE, Kamboj M.

J Clin Microbiol. 2012 Apr;50(4):1303-7. doi: 10.1128/JCM.05711-11. Epub 2012 Jan 11.

33.

Evaluation of the RIDAQuick norovirus immunochromatographic test kit.

Battaglioli G, Nazarian EJ, Lamson D, Musser KA, St George K.

J Clin Virol. 2012 Mar;53(3):262-4. doi: 10.1016/j.jcv.2011.12.007. Epub 2012 Jan 9.

PMID:
22226980
34.

A novel vehicle for transmission of Escherichia coli O157:H7 to humans: multistate outbreak of E. coli O157:H7 infections associated with consumption of ready-to-bake commercial prepackaged cookie dough--United States, 2009.

Neil KP, Biggerstaff G, MacDonald JK, Trees E, Medus C, Musser KA, Stroika SG, Zink D, Sotir MJ.

Clin Infect Dis. 2012 Feb 15;54(4):511-8. doi: 10.1093/cid/cir831. Epub 2011 Dec 8.

PMID:
22157169
35.

A whole-genome single nucleotide polymorphism-based approach to trace and identify outbreaks linked to a common Salmonella enterica subsp. enterica serovar Montevideo pulsed-field gel electrophoresis type.

Bakker HC, Switt AI, Cummings CA, Hoelzer K, Degoricija L, Rodriguez-Rivera LD, Wright EM, Fang R, Davis M, Root T, Schoonmaker-Bopp D, Musser KA, Villamil E, Waechter H, Kornstein L, Furtado MR, Wiedmann M.

Appl Environ Microbiol. 2011 Dec;77(24):8648-55. doi: 10.1128/AEM.06538-11. Epub 2011 Oct 14.

36.

Evaluation of a single-tube multiplex real-time PCR for differentiation of members of the Mycobacterium tuberculosis complex in clinical specimens.

Halse TA, Escuyer VE, Musser KA.

J Clin Microbiol. 2011 Jul;49(7):2562-7. doi: 10.1128/JCM.00467-11. Epub 2011 May 18.

37.

Public health approach to detection of non-O157 Shiga toxin-producing Escherichia coli: summary of two outbreaks and laboratory procedures.

Schaffzin JK, Coronado F, Dumas NB, Root TP, Halse TA, Schoonmaker-Bopp DJ, Lurie MM, Nicholas D, Gerzonich B, Johnson GS, Wallace BJ, Musser KA.

Epidemiol Infect. 2012 Feb;140(2):283-9. doi: 10.1017/S0950268811000719. Epub 2011 May 5.

PMID:
21554779
38.

Sporosarcina newyorkensis sp. nov. from clinical specimens and raw cow's milk.

Wolfgang WJ, Coorevits A, Cole JA, De Vos P, Dickinson MC, Hannett GE, Jose R, Nazarian EJ, Schumann P, Van Landschoot A, Wirth SE, Musser KA.

Int J Syst Evol Microbiol. 2012 Feb;62(Pt 2):322-9. doi: 10.1099/ijs.0.030080-0. Epub 2011 Mar 18.

PMID:
21421928
39.

Psychrobacter sanguinis sp. nov., recovered from four clinical specimens over a 4-year period.

Wirth SE, Ayala-del-Río HL, Cole JA, Kohlerschmidt DJ, Musser KA, Sepúlveda-Torres Ldel C, Thompson LM, Wolfgang WJ.

Int J Syst Evol Microbiol. 2012 Jan;62(Pt 1):49-54. doi: 10.1099/ijs.0.029058-0. Epub 2011 Feb 11.

PMID:
21317274
40.

Analysis of Escherichia coli O157 clinical isolates by multilocus sequence typing.

Rajkhowa S, Scaria J, Garcia DL, Musser KA, Akey BL, Chang YF.

BMC Res Notes. 2010 Dec 21;3:343. doi: 10.1186/1756-0500-3-343.

41.

Comparison of premier CAMPY enzyme immunoassay (EIA), ProSpecT Campylobacter EIA, and ImmunoCard STAT! CAMPY tests with culture for laboratory diagnosis of Campylobacter enteric infections.

Granato PA, Chen L, Holiday I, Rawling RA, Novak-Weekley SM, Quinlan T, Musser KA.

J Clin Microbiol. 2010 Nov;48(11):4022-7. doi: 10.1128/JCM.00486-10. Epub 2010 Sep 1.

42.

Neisseria wadsworthii sp. nov. and Neisseria shayeganii sp. nov., isolated from clinical specimens.

Wolfgang WJ, Carpenter AN, Cole JA, Gronow S, Habura A, Jose S, Nazarian EJ, Kohlerschmidt DJ, Limberger R, Schoonmaker-Bopp D, Spröer C, Musser KA.

Int J Syst Evol Microbiol. 2011 Jan;61(Pt 1):91-8. doi: 10.1099/ijs.0.022426-0. Epub 2010 Feb 19.

PMID:
20173010
43.

Combined real-time PCR and rpoB gene pyrosequencing for rapid identification of Mycobacterium tuberculosis and determination of rifampin resistance directly in clinical specimens.

Halse TA, Edwards J, Cunningham PL, Wolfgang WJ, Dumas NB, Escuyer VE, Musser KA.

J Clin Microbiol. 2010 Apr;48(4):1182-8. doi: 10.1128/JCM.02149-09. Epub 2010 Jan 27.

44.

Use of multiple-locus variable number tandem repeat analysis and phage typing for subtyping of Salmonella Enteritidis from sporadic human cases in the United States.

Cho S, Whittam TS, Boxrud DJ, Bartkus JM, Rankin SC, Wilkins MJ, Somsel P, Downes FP, Musser KA, Root TP, Warnick LD, Wiedmann M, Saeed AM.

J Appl Microbiol. 2010 Mar;108(3):859-67. doi: 10.1111/j.1365-2672.2009.04492.x. Epub 2009 Jul 20.

45.

Rapid molecular characterization of Clostridium difficile and assessment of populations of C. difficile in stool specimens.

Wroblewski D, Hannett GE, Bopp DJ, Dumyati GK, Halse TA, Dumas NB, Musser KA.

J Clin Microbiol. 2009 Jul;47(7):2142-8. doi: 10.1128/JCM.02498-08. Epub 2009 Apr 29.

46.

Design and implementation of a protocol for the detection of Legionella in clinical and environmental samples.

Nazarian EJ, Bopp DJ, Saylors A, Limberger RJ, Musser KA.

Diagn Microbiol Infect Dis. 2008 Oct;62(2):125-32. doi: 10.1016/j.diagmicrobio.2008.05.004. Epub 2008 Jul 14.

PMID:
18621500
47.

High-level vancomycin-resistant Staphylococcus aureus isolates associated with a polymicrobial biofilm.

Weigel LM, Donlan RM, Shin DH, Jensen B, Clark NC, McDougal LK, Zhu W, Musser KA, Thompson J, Kohlerschmidt D, Dumas N, Limberger RJ, Patel JB.

Antimicrob Agents Chemother. 2007 Jan;51(1):231-8. Epub 2006 Oct 30.

48.

Development and evaluation of a 4-target multiplex real-time polymerase chain reaction assay for the detection and characterization of Yersinia pestis.

Woron AM, Nazarian EJ, Egan C, McDonough KA, Cirino NM, Limberger RJ, Musser KA.

Diagn Microbiol Infect Dis. 2006 Nov;56(3):261-8. Epub 2006 Sep 1.

PMID:
16949784
49.
50.

Use of a multiplex molecular beacon platform for rapid detection of methicillin and vancomycin resistance in Staphylococcus aureus.

Sinsimer D, Leekha S, Park S, Marras SA, Koreen L, Willey B, Naidich S, Musser KA, Kreiswirth BN.

J Clin Microbiol. 2005 Sep;43(9):4585-91.

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