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tRNAs and Aminoacyl-tRNA Synthetases in Human Disease: an introduction to the JBC Reviews thematic series.

Musier-Forsyth K.

J Biol Chem. 2019 Feb 24. pii: jbc.REV119.007721. doi: 10.1074/jbc.REV119.007721. [Epub ahead of print] Review.


Solution Conformation of Bovine Leukemia Virus Gag Suggests an Elongated Structure.

Qualley DF, Cooper SE, Ross JL, Olson ED, Cantara WA, Musier-Forsyth K.

J Mol Biol. 2019 Mar 15;431(6):1203-1216. doi: 10.1016/j.jmb.2019.01.036. Epub 2019 Feb 4.


Role of Host tRNAs and Aminoacyl-tRNA Synthetases in Retroviral Replication.

Jin D, Musier-Forsyth K.

J Biol Chem. 2019 Jan 30. pii: jbc.REV118.002957. doi: 10.1074/jbc.REV118.002957. [Epub ahead of print] Review.


Analysis of discrete local variability and structural covariance in macromolecular assemblies using Cryo-EM and focused classification.

Zhang C, Cantara W, Jeon Y, Musier-Forsyth K, Grigorieff N, Lyumkis D.

Ultramicroscopy. 2018 Nov 29. pii: S0304-3991(18)30266-3. doi: 10.1016/j.ultramic.2018.11.016. [Epub ahead of print]


Isothermal amplification of long DNA segments by quadruplex priming amplification.

Lomidze L, Williford TH, Musier-Forsyth K, Kankia B.

Anal Methods. 2018 Jul 7;10(25):2972-2979. doi: 10.1039/C8AY00843D. Epub 2018 May 29.


Stoichiometry of triple-sieve tRNA editing complex ensures fidelity of aminoacyl-tRNA formation.

Chen L, Tanimoto A, So BR, Bakhtina M, Magliery TJ, Wysocki VH, Musier-Forsyth K.

Nucleic Acids Res. 2019 Jan 25;47(2):929-940. doi: 10.1093/nar/gky1153.


Human T-cell leukemia virus type 1 Gag domains have distinct RNA-binding specificities with implications for RNA packaging and dimerization.

Wu W, Hatterschide J, Syu YC, Cantara WA, Blower RJ, Hanson HM, Mansky LM, Musier-Forsyth K.

J Biol Chem. 2018 Oct 19;293(42):16261-16276. doi: 10.1074/jbc.RA118.005531. Epub 2018 Sep 14.


Argonaute-based programmable RNase as a tool for cleavage of highly-structured RNA.

Dayeh DM, Cantara WA, Kitzrow JP, Musier-Forsyth K, Nakanishi K.

Nucleic Acids Res. 2018 Sep 19;46(16):e98. doi: 10.1093/nar/gky496.


SAMHD1 Impairs HIV-1 Gene Expression and Negatively Modulates Reactivation of Viral Latency in CD4+ T Cells.

Antonucci JM, Kim SH, St Gelais C, Bonifati S, Li TW, Buzovetsky O, Knecht KM, Duchon AA, Xiong Y, Musier-Forsyth K, Wu L.

J Virol. 2018 Jul 17;92(15). pii: e00292-18. doi: 10.1128/JVI.00292-18. Print 2018 Aug 1.


Retroviral Gag protein-RNA interactions: Implications for specific genomic RNA packaging and virion assembly.

Olson ED, Musier-Forsyth K.

Semin Cell Dev Biol. 2019 Feb;86:129-139. doi: 10.1016/j.semcdb.2018.03.015. Epub 2018 Apr 1. Review.


Publisher Correction: Double mimicry evades tRNA synthetase editing by toxic vegetable-sourced non-proteinogenic amino acid.

Song Y, Zhou H, Vo MN, Shi Y, Nawaz MH, Vargas-Rodriguez O, Diedrich JK, Yates JR 3rd, Kishi S, Musier-Forsyth K, Schimmel P.

Nat Commun. 2018 Mar 13;9(1):1113. doi: 10.1038/s41467-018-03594-1.


Double mimicry evades tRNA synthetase editing by toxic vegetable-sourced non-proteinogenic amino acid.

Song Y, Zhou H, Vo MN, Shi Y, Nawaz MH, Vargas-Rodriguez O, Diedrich JK, Yates JR, Kishi S, Musier-Forsyth K, Schimmel P.

Nat Commun. 2017 Dec 22;8(1):2281. doi: 10.1038/s41467-017-02201-z. Erratum in: Nat Commun. 2018 Mar 13;9(1):1113.


Conservation of tRNA mimicry in the 5'-untranslated region of distinct HIV-1 subtypes.

Comandur R, Olson ED, Musier-Forsyth K.

RNA. 2017 Dec;23(12):1850-1859. doi: 10.1261/rna.062182.117. Epub 2017 Aug 31.


HIV-1 Exploits a Dynamic Multi-aminoacyl-tRNA Synthetase Complex To Enhance Viral Replication.

Duchon AA, St Gelais C, Titkemeier N, Hatterschide J, Wu L, Musier-Forsyth K.

J Virol. 2017 Oct 13;91(21). pii: e01240-17. doi: 10.1128/JVI.01240-17. Print 2017 Nov 1.


Conformational and chemical selection by a trans-acting editing domain.

Danhart EM, Bakhtina M, Cantara WA, Kuzmishin AB, Ma X, Sanford BL, Vargas-Rodriguez O, Košutić M, Goto Y, Suga H, Nakanishi K, Micura R, Foster MP, Musier-Forsyth K.

Proc Natl Acad Sci U S A. 2017 Aug 15;114(33):E6774-E6783. doi: 10.1073/pnas.1703925114. Epub 2017 Aug 2. Erratum in: Proc Natl Acad Sci U S A. 2017 Nov 13;:. Vargas-Rodriguez, Oscar [added].


Quality control by trans-editing factor prevents global mistranslation of non-protein amino acid α-aminobutyrate.

Bacusmo JM, Kuzmishin AB, Cantara WA, Goto Y, Suga H, Musier-Forsyth K.

RNA Biol. 2018;15(4-5):576-585. doi: 10.1080/15476286.2017.1353846. Epub 2017 Nov 3.


Mechanistic differences between HIV-1 and SIV nucleocapsid proteins and cross-species HIV-1 genomic RNA recognition.

Post K, Olson ED, Naufer MN, Gorelick RJ, Rouzina I, Williams MC, Musier-Forsyth K, Levin JG.

Retrovirology. 2016 Dec 29;13(1):89. doi: 10.1186/s12977-016-0322-5.


Inhibition of HIV-1 Gag-membrane interactions by specific RNAs.

Todd GC, Duchon A, Inlora J, Olson ED, Musier-Forsyth K, Ono A.

RNA. 2017 Mar;23(3):395-405. doi: 10.1261/rna.058453.116. Epub 2016 Dec 8.


Anticodon-like binding of the HIV-1 tRNA-like element to human lysyl-tRNA synthetase.

Liu S, Comandur R, Jones CP, Tsang P, Musier-Forsyth K.

RNA. 2016 Dec;22(12):1828-1835. Epub 2016 Oct 19.


RiboCAT: a new capillary electrophoresis data analysis tool for nucleic acid probing.

Cantara WA, Hatterschide J, Wu W, Musier-Forsyth K.

RNA. 2017 Feb;23(2):240-249. doi: 10.1261/rna.058404.116. Epub 2016 Nov 7.


Analysis of RNA structure using small-angle X-ray scattering.

Cantara WA, Olson ED, Musier-Forsyth K.

Methods. 2017 Jan 15;113:46-55. doi: 10.1016/j.ymeth.2016.10.008. Epub 2016 Oct 21.


Functional Equivalence of Retroviral MA Domains in Facilitating Psi RNA Binding Specificity by Gag.

Rye-McCurdy T, Olson ED, Liu S, Binkley C, Reyes JP, Thompson BR, Flanagan JM, Parent LJ, Musier-Forsyth K.

Viruses. 2016 Sep 19;8(9). pii: E256.


Sr(2+) induces unusually stable d(GGGTGGGTGGGTGGG) quadruplex dimers.

Lomidze L, Kelley S, Gogichaishvili S, Metreveli N, Musier-Forsyth K, Kankia B.

Biopolymers. 2016 Nov;105(11):811-8. doi: 10.1002/bip.22916.


Stable Domain Assembly of a Monomolecular DNA Quadruplex: Implications for DNA-Based Nanoswitches.

Kankia B, Gvarjaladze D, Rabe A, Lomidze L, Metreveli N, Musier-Forsyth K.

Biophys J. 2016 May 24;110(10):2169-75. doi: 10.1016/j.bpj.2016.04.031.


Targeted binding of nucleocapsid protein transforms the folding landscape of HIV-1 TAR RNA.

McCauley MJ, Rouzina I, Manthei KA, Gorelick RJ, Musier-Forsyth K, Williams MC.

Proc Natl Acad Sci U S A. 2015 Nov 3;112(44):13555-60. doi: 10.1073/pnas.1510100112. Epub 2015 Oct 19.


New Structure Sheds Light on Selective HIV-1 Genomic RNA Packaging.

Olson ED, Cantara WA, Musier-Forsyth K.

Viruses. 2015 Aug 24;7(8):4826-35. doi: 10.3390/v7082846.


Homologous trans-editing factors with broad tRNA specificity prevent mistranslation caused by serine/threonine misactivation.

Liu Z, Vargas-Rodriguez O, Goto Y, Novoa EM, Ribas de Pouplana L, Suga H, Musier-Forsyth K.

Proc Natl Acad Sci U S A. 2015 May 12;112(19):6027-32. doi: 10.1073/pnas.1423664112. Epub 2015 Apr 27.


Ancestral AlaX editing enzymes for control of genetic code fidelity are not tRNA-specific.

Novoa EM, Vargas-Rodriguez O, Lange S, Goto Y, Suga H, Musier-Forsyth K, Ribas de Pouplana L.

J Biol Chem. 2015 Apr 17;290(16):10495-503. doi: 10.1074/jbc.M115.640060. Epub 2015 Feb 27.


Fluorescence anisotropy-based salt-titration approach to characterize protein-nucleic acid interactions.

Rye-McCurdy T, Rouzina I, Musier-Forsyth K.

Methods Mol Biol. 2015;1259:385-402. doi: 10.1007/978-1-4939-2214-7_23.


Retroviral nucleocapsid protein and assembly. Foreword.

Berkhout B, Mouland AJ, Musier-Forsyth K.

Virus Res. 2014 Nov 26;193:1. doi: 10.1016/j.virusres.2014.10.018. Epub 2014 Nov 5. No abstract available.


Structural biology: wobble puts RNA on target.

Vargas-Rodriguez O, Musier-Forsyth K.

Nature. 2014 Jun 26;510(7506):480-1. doi: 10.1038/nature13502. Epub 2014 Jun 11. No abstract available.


Single aromatic residue location alters nucleic acid binding and chaperone function of FIV nucleocapsid protein.

Wu H, Wang W, Naiyer N, Fichtenbaum E, Qualley DF, McCauley MJ, Gorelick RJ, Rouzina I, Musier-Forsyth K, Williams MC.

Virus Res. 2014 Nov 26;193:39-51. doi: 10.1016/j.virusres.2014.06.002. Epub 2014 Jun 7.


Distinct nucleic acid interaction properties of HIV-1 nucleocapsid protein precursor NCp15 explain reduced viral infectivity.

Wang W, Naiyer N, Mitra M, Li J, Williams MC, Rouzina I, Gorelick RJ, Wu Z, Musier-Forsyth K.

Nucleic Acids Res. 2014 Jun;42(11):7145-59. doi: 10.1093/nar/gku335. Epub 2014 May 9.


Single-Molecule Fluorescence Using Nucleotide Analogs: A Proof-of-Principle.

Alemán EA, de Silva C, Patrick EM, Musier-Forsyth K, Rueda D.

J Phys Chem Lett. 2014 Mar 6;5(5):777-781. Epub 2014 Feb 6.


Mechanistic differences between nucleic acid chaperone activities of the Gag proteins of Rous sarcoma virus and human immunodeficiency virus type 1 are attributed to the MA domain.

Rye-McCurdy TD, Nadaraia-Hoke S, Gudleski-O'Regan N, Flanagan JM, Parent LJ, Musier-Forsyth K.

J Virol. 2014 Jul;88(14):7852-61. doi: 10.1128/JVI.00736-14. Epub 2014 Apr 30.


The Arabidopsis thaliana tandem zinc finger 1 (AtTZF1) protein in RNA binding and decay.

Qu J, Kang SG, Wang W, Musier-Forsyth K, Jang JC.

Plant J. 2014 May;78(3):452-67. doi: 10.1111/tpj.12485. Epub 2014 Apr 15.


Small-angle X-ray scattering-derived structure of the HIV-1 5' UTR reveals 3D tRNA mimicry.

Jones CP, Cantara WA, Olson ED, Musier-Forsyth K.

Proc Natl Acad Sci U S A. 2014 Mar 4;111(9):3395-400. doi: 10.1073/pnas.1319658111. Epub 2014 Feb 18.


Strictly conserved lysine of prolyl-tRNA Synthetase editing domain facilitates binding and positioning of misacylated tRNA(Pro.).

Bartholow TG, Sanford BL, Cao B, Schmit HL, Johnson JM, Meitzner J, Bhattacharyya S, Musier-Forsyth K, Hati S.

Biochemistry. 2014 Feb 18;53(6):1059-68. doi: 10.1021/bi401279r. Epub 2014 Feb 3.


Distinct tRNA recognition strategies used by a homologous family of editing domains prevent mistranslation.

Das M, Vargas-Rodriguez O, Goto Y, Suga H, Musier-Forsyth K.

Nucleic Acids Res. 2014 Apr;42(6):3943-53. doi: 10.1093/nar/gkt1332. Epub 2013 Dec 25.


Oligomerization transforms human APOBEC3G from an efficient enzyme to a slowly dissociating nucleic acid-binding protein.

Chaurasiya KR, McCauley MJ, Wang W, Qualley DF, Wu T, Kitamura S, Geertsema H, Chan DS, Hertz A, Iwatani Y, Levin JG, Musier-Forsyth K, Rouzina I, Williams MC.

Nat Chem. 2014 Jan;6(1):28-33. doi: 10.1038/nchem.1795. Epub 2013 Nov 24.


Thermal stability of quadruplex primers for highly versatile isothermal DNA amplification.

Mathias J, Okyere R, Lomidze L, Gvarjaladze D, Musier-Forsyth K, Kankia B.

Biophys Chem. 2014 Jan;185:14-8. doi: 10.1016/j.bpc.2013.10.008. Epub 2013 Nov 9.


Differential contribution of basic residues to HIV-1 nucleocapsid protein's nucleic acid chaperone function and retroviral replication.

Wu H, Mitra M, Naufer MN, McCauley MJ, Gorelick RJ, Rouzina I, Musier-Forsyth K, Williams MC.

Nucleic Acids Res. 2014 Feb;42(4):2525-37. doi: 10.1093/nar/gkt1227. Epub 2013 Nov 28.


Retrovirus-specific differences in matrix and nucleocapsid protein-nucleic acid interactions: implications for genomic RNA packaging.

Sun M, Grigsby IF, Gorelick RJ, Mansky LM, Musier-Forsyth K.

J Virol. 2014 Jan;88(2):1271-80. doi: 10.1128/JVI.02151-13. Epub 2013 Nov 13.


The N-terminal zinc finger and flanking basic domains represent the minimal region of the human immunodeficiency virus type-1 nucleocapsid protein for targeting chaperone function.

Mitra M, Wang W, Vo MN, Rouzina I, Barany G, Musier-Forsyth K.

Biochemistry. 2013 Nov 19;52(46):8226-36. doi: 10.1021/bi401250a. Epub 2013 Nov 6.


Distinct binding interactions of HIV-1 Gag to Psi and non-Psi RNAs: implications for viral genomic RNA packaging.

Webb JA, Jones CP, Parent LJ, Rouzina I, Musier-Forsyth K.

RNA. 2013 Aug;19(8):1078-88. doi: 10.1261/rna.038869.113. Epub 2013 Jun 24.


Multiple pathways promote dynamical coupling between catalytic domains in Escherichia coli prolyl-tRNA synthetase.

Johnson JM, Sanford BL, Strom AM, Tadayon SN, Lehman BP, Zirbes AM, Bhattacharyya S, Musier-Forsyth K, Hati S.

Biochemistry. 2013 Jun 25;52(25):4399-412. doi: 10.1021/bi400079h. Epub 2013 Jun 17.


Exclusive use of trans-editing domains prevents proline mistranslation.

Vargas-Rodriguez O, Musier-Forsyth K.

J Biol Chem. 2013 May 17;288(20):14391-9. doi: 10.1074/jbc.M113.467795. Epub 2013 Apr 5.


Molecular mimicry of human tRNALys anti-codon domain by HIV-1 RNA genome facilitates tRNA primer annealing.

Jones CP, Saadatmand J, Kleiman L, Musier-Forsyth K.

RNA. 2013 Feb;19(2):219-29. doi: 10.1261/rna.036681.112. Epub 2012 Dec 21.


Isothermal quadruplex priming amplification for DNA-based diagnostics.

Taylor A, Joseph A, Okyere R, Gogichaishvili S, Musier-Forsyth K, Kankia B.

Biophys Chem. 2013 Jan;171:1-8. doi: 10.1016/j.bpc.2012.11.001. Epub 2012 Nov 14.


Aminoacyl-tRNA substrate and enzyme backbone atoms contribute to translational quality control by YbaK.

Kumar S, Das M, Hadad CM, Musier-Forsyth K.

J Phys Chem B. 2013 Apr 25;117(16):4521-7. doi: 10.1021/jp308628y. Epub 2012 Dec 6.

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