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Landscape drivers of genomic diversity and divergence in woodland Eucalyptus.

Murray KD, Janes JK, Jones A, Bothwell HM, Andrew RL, Borevitz JO.

Mol Ecol. 2019 Dec;28(24):5232-5247. doi: 10.1111/mec.15287. Epub 2019 Nov 17.


A toolbox of nanobodies developed and validated for use as intrabodies and nanoscale immunolabels in mammalian brain neurons.

Dong JX, Lee Y, Kirmiz M, Palacio S, Dumitras C, Moreno CM, Sando R, Santana LF, Südhof TC, Gong B, Murray KD, Trimmer JS.

Elife. 2019 Sep 30;8. pii: e48750. doi: 10.7554/eLife.48750.


Astroglial-targeted expression of the fragile X CGG repeat premutation in mice yields RAN translation, motor deficits and possible evidence for cell-to-cell propagation of FXTAS pathology.

Wenzel HJ, Murray KD, Haify SN, Hunsaker MR, Schwartzer JJ, Kim K, La Spada AR, Sopher BL, Hagerman PJ, Raske C, Severijnen LWFM, Willemsen R, Hukema RK, Berman RF.

Acta Neuropathol Commun. 2019 Feb 26;7(1):27. doi: 10.1186/s40478-019-0677-7.


A toolbox of IgG subclass-switched recombinant monoclonal antibodies for enhanced multiplex immunolabeling of brain.

Andrews NP, Boeckman JX, Manning CF, Nguyen JT, Bechtold H, Dumitras C, Gong B, Nguyen K, van der List D, Murray KD, Engebrecht J, Trimmer JS.

Elife. 2019 Jan 22;8. pii: e43322. doi: 10.7554/eLife.43322.


Global Diversity of the Brachypodium Species Complex as a Resource for Genome-Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate.

Wilson PB, Streich JC, Murray KD, Eichten SR, Cheng R, Aitken NC, Spokas K, Warthmann N, Gordon SP; Accession Contributors, Vogel JP, Borevitz JO.

Genetics. 2019 Jan;211(1):317-331. doi: 10.1534/genetics.118.301589. Epub 2018 Nov 16.


RNA Polymerase II Read-Through Promotes Expression of Neighboring Genes in SAL1-PAP-XRN Retrograde Signaling.

Crisp PA, Smith AB, Ganguly DR, Murray KD, Eichten SR, Millar AA, Pogson BJ.

Plant Physiol. 2018 Dec;178(4):1614-1630. doi: 10.1104/pp.18.00758. Epub 2018 Oct 9.


Short-lived pause in Central California subsidence after heavy winter precipitation of 2017.

Murray KD, Lohman RB.

Sci Adv. 2018 Aug 29;4(8):eaar8144. doi: 10.1126/sciadv.aar8144. eCollection 2018 Aug.


Axe: rapid, competitive sequence read demultiplexing using a trie.

Murray KD, Borevitz JO.

Bioinformatics. 2018 Nov 15;34(22):3924-3925. doi: 10.1093/bioinformatics/bty432.


Metabolic Inhibitors of O-GlcNAc Transferase That Act In Vivo Implicate Decreased O-GlcNAc Levels in Leptin-Mediated Nutrient Sensing.

Liu TW, Zandberg WF, Gloster TM, Deng L, Murray KD, Shan X, Vocadlo DJ.

Angew Chem Int Ed Engl. 2018 Jun 25;57(26):7644-7648. doi: 10.1002/anie.201803254. Epub 2018 May 24.


Kv2 Ion Channels Determine the Expression and Localization of the Associated AMIGO-1 Cell Adhesion Molecule in Adult Brain Neurons.

Bishop HI, Cobb MM, Kirmiz M, Parajuli LK, Mandikian D, Philp AM, Melnik M, Kuja-Panula J, Rauvala H, Shigemoto R, Murray KD, Trimmer JS.

Front Mol Neurosci. 2018 Jan 19;11:1. doi: 10.3389/fnmol.2018.00001. eCollection 2018.


kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity.

Murray KD, Webers C, Ong CS, Borevitz J, Warthmann N.

PLoS Comput Biol. 2017 Sep 5;13(9):e1005727. doi: 10.1371/journal.pcbi.1005727. eCollection 2017 Sep.


Heterogeneity in Kv2 Channel Expression Shapes Action Potential Characteristics and Firing Patterns in CA1 versus CA2 Hippocampal Pyramidal Neurons.

Palacio S, Chevaleyre V, Brann DH, Murray KD, Piskorowski RA, Trimmer JS.

eNeuro. 2017 Aug 24;4(4). pii: ENEURO.0267-17.2017. doi: 10.1523/ENEURO.0267-17.2017. eCollection 2017 Jul-Aug.


Rapid Recovery Gene Downregulation during Excess-Light Stress and Recovery in Arabidopsis.

Crisp PA, Ganguly DR, Smith AB, Murray KD, Estavillo GM, Searle I, Ford E, Bogdanović O, Lister R, Borevitz JO, Eichten SR, Pogson BJ.

Plant Cell. 2017 Aug;29(8):1836-1863. doi: 10.1105/tpc.16.00828. Epub 2017 Jul 13.


Identification and qualification of 500 nuclear, single-copy, orthologous genes for the Eupulmonata (Gastropoda) using transcriptome sequencing and exon capture.

Teasdale LC, Köhler F, Murray KD, O'Hara T, Moussalli A.

Mol Ecol Resour. 2016 Sep;16(5):1107-23. doi: 10.1111/1755-0998.12552. Epub 2016 Aug 8.


Complete nucleotide sequences of a new bipartite begomovirus from Malvastrum sp. plants with bright yellow mosaic symptoms in South Texas.

Alabi OJ, Villegas C, Gregg L, Murray KD.

Arch Virol. 2016 Jun;161(6):1729-33. doi: 10.1007/s00705-016-2821-z. Epub 2016 Mar 26.


Developing high-quality mouse monoclonal antibodies for neuroscience research - approaches, perspectives and opportunities.

Gong B, Murray KD, Trimmer JS.

N Biotechnol. 2016 Sep 25;33(5 Pt A):551-64. doi: 10.1016/j.nbt.2015.11.007. Epub 2015 Nov 28.


Distinct Cell- and Layer-Specific Expression Patterns and Independent Regulation of Kv2 Channel Subtypes in Cortical Pyramidal Neurons.

Bishop HI, Guan D, Bocksteins E, Parajuli LK, Murray KD, Cobb MM, Misonou H, Zito K, Foehring RC, Trimmer JS.

J Neurosci. 2015 Nov 4;35(44):14922-42. doi: 10.1523/JNEUROSCI.1897-15.2015.


The khmer software package: enabling efficient nucleotide sequence analysis.

Crusoe MR, Alameldin HF, Awad S, Boucher E, Caldwell A, Cartwright R, Charbonneau A, Constantinides B, Edvenson G, Fay S, Fenton J, Fenzl T, Fish J, Garcia-Gutierrez L, Garland P, Gluck J, González I, Guermond S, Guo J, Gupta A, Herr JR, Howe A, Hyer A, Härpfer A, Irber L, Kidd R, Lin D, Lippi J, Mansour T, McA'Nulty P, McDonald E, Mizzi J, Murray KD, Nahum JR, Nanlohy K, Nederbragt AJ, Ortiz-Zuazaga H, Ory J, Pell J, Pepe-Ranney C, Russ ZN, Schwarz E, Scott C, Seaman J, Sievert S, Simpson J, Skennerton CT, Spencer J, Srinivasan R, Standage D, Stapleton JA, Steinman SR, Stein J, Taylor B, Trimble W, Wiencko HL, Wright M, Wyss B, Zhang Q, Zyme E, Brown CT.

F1000Res. 2015 Sep 25;4:900. doi: 10.12688/f1000research.6924.1. eCollection 2015.


Mitochondrial complex I deficiency leads to inflammation and retinal ganglion cell death in the Ndufs4 mouse.

Yu AK, Song L, Murray KD, van der List D, Sun C, Shen Y, Xia Z, Cortopassi GA.

Hum Mol Genet. 2015 May 15;24(10):2848-60. doi: 10.1093/hmg/ddv045. Epub 2015 Feb 4.


A chromatin modifying enzyme, SDG8, is involved in morphological, gene expression, and epigenetic responses to mechanical stimulation.

Cazzonelli CI, Nisar N, Roberts AC, Murray KD, Borevitz JO, Pogson BJ.

Front Plant Sci. 2014 Oct 21;5:533. doi: 10.3389/fpls.2014.00533. eCollection 2014.


TraitCapture: genomic and environment modelling of plant phenomic data.

Brown TB, Cheng R, Sirault XR, Rungrat T, Murray KD, Trtilek M, Furbank RT, Badger M, Pogson BJ, Borevitz JO.

Curr Opin Plant Biol. 2014 Apr;18:73-9. doi: 10.1016/j.pbi.2014.02.002. Epub 2014 Mar 16. Review.


Transcriptome analysis of the honey bee fungal pathogen, Ascosphaera apis: implications for host pathogenesis.

Cornman RS, Bennett AK, Murray KD, Evans JD, Elsik CG, Aronstein K.

BMC Genomics. 2012 Jun 29;13:285. doi: 10.1186/1471-2164-13-285.


Abnormal dendrite and spine morphology in primary visual cortex in the CGG knock-in mouse model of the fragile X premutation.

Berman RF, Murray KD, Arque G, Hunsaker MR, Wenzel HJ.

Epilepsia. 2012 Jun;53 Suppl 1:150-60. doi: 10.1111/j.1528-1167.2012.03486.x.


Neuronal excitability and calcium/calmodulin-dependent protein kinase type II: location, location, location.

Liu XB, Murray KD.

Epilepsia. 2012 Jun;53 Suppl 1:45-52. doi: 10.1111/j.1528-1167.2012.03474.x. Review.


Sema3E/plexin-D1 mediated epithelial-to-mesenchymal transition in ovarian endometrioid cancer.

Tseng CH, Murray KD, Jou MF, Hsu SM, Cheng HJ, Huang PH.

PLoS One. 2011 Apr 29;6(4):e19396. doi: 10.1371/journal.pone.0019396.


Low-threshold calcium channel subunit Ca(v) 3.3 is specifically localized in GABAergic neurons of rodent thalamus and cerebral cortex.

Liu XB, Murray KD, Jones EG.

J Comp Neurol. 2011 Apr 15;519(6):1181-95. doi: 10.1002/cne.22567.


Transcriptional responses in honey bee larvae infected with chalkbrood fungus.

Aronstein KA, Murray KD, Saldivar E.

BMC Genomics. 2010 Jun 21;11:391. doi: 10.1186/1471-2164-11-391.


Chalkbrood disease in honey bees.

Aronstein KA, Murray KD.

J Invertebr Pathol. 2010 Jan;103 Suppl 1:S20-9. doi: 10.1016/j.jip.2009.06.018. Epub 2009 Nov 11. Review.


Dynamic interface pressure distributions of two transtibial prosthetic socket concepts.

Dumbleton T, Buis AW, McFadyen A, McHugh BF, McKay G, Murray KD, Sexton S.

J Rehabil Res Dev. 2009;46(3):405-15.


Environmental tobacco smoke avoidance among pregnant African-American nonsmokers.

Blake SM, Murray KD, El-Khorazaty MN, Gantz MG, Kiely M, Best D, Joseph JG, El-Mohandes AA.

Am J Prev Med. 2009 Mar;36(3):225-34. doi: 10.1016/j.amepre.2008.10.012.


Molecular correlates of laminar differences in the macaque dorsal lateral geniculate nucleus.

Murray KD, Rubin CM, Jones EG, Chalupa LM.

J Neurosci. 2008 Nov 12;28(46):12010-22. doi: 10.1523/JNEUROSCI.3800-08.2008.


Transformation of the Gram-positive honey bee pathogen, Paenibacillus larvae, by electroporation.

Murray KD, Aronstein KA.

J Microbiol Methods. 2008 Oct;75(2):325-8. doi: 10.1016/j.mimet.2008.07.007. Epub 2008 Jul 17.


Vesicular glutamate transporters define two sets of glutamatergic afferents to the somatosensory thalamus and two thalamocortical projections in the mouse.

Graziano A, Liu XB, Murray KD, Jones EG.

J Comp Neurol. 2008 Mar 10;507(2):1258-76. doi: 10.1002/cne.21592.


High mobility group (HMG-box) genes in the honeybee fungal pathogen Ascosphaera apis.

Aronstein KA, Murray KD, de León JH, Qin X, Weinstock GM.

Mycologia. 2007 Jul-Aug;99(4):553-61.


Low-income minority mothers' reports of infant health care utilisation compared with medical records.

Murray KD, El-Mohandes AA, El-Khorazaty MN, Kiely M.

Paediatr Perinat Epidemiol. 2007 May;21(3):274-83.


Nucleus- and cell-specific gene expression in monkey thalamus.

Murray KD, Choudary PV, Jones EG.

Proc Natl Acad Sci U S A. 2007 Feb 6;104(6):1989-94. Epub 2007 Jan 29.


Genome sequences of the honey bee pathogens Paenibacillus larvae and Ascosphaera apis.

Qin X, Evans JD, Aronstein KA, Murray KD, Weinstock GM.

Insect Mol Biol. 2006 Oct;15(5):715-8.


Ephrin-As mediate targeting of eye-specific projections to the lateral geniculate nucleus.

Huberman AD, Murray KD, Warland DK, Feldheim DA, Chapman B.

Nat Neurosci. 2005 Aug;8(8):1013-21. Epub 2005 Jul 17.


Minimally invasive is in the eye of the beholder: "big incisions for big operations".

Murray KD.

Chest. 2005 Jan;127(1):3-4. No abstract available.


Two epochs in the development of gamma-aminobutyric acidergic neurons in the ferret thalamus.

Hayes SG, Murray KD, Jones EG.

J Comp Neurol. 2003 Aug 11;463(1):45-65.


The effect of a parenting education program on the use of preventive pediatric health care services among low-income, minority mothers: a randomized, controlled study.

El-Mohandes AA, Katz KS, El-Khorazaty MN, McNeely-Johnson D, Sharps PW, Jarrett MH, Rose A, White DM, Young M, Grylack L, Murray KD, Katta PS, Burroughs M, Atiyeh G, Wingrove BK, Herman AA.

Pediatrics. 2003 Jun;111(6 Pt 1):1324-32.


The influence of pulmonary staple line reinforcement on air leaks.

Murray KD, Ho CH, Hsia JY, Little AG.

Chest. 2002 Dec;122(6):2146-9.


Cricothyroid approximation to elevate vocal pitch in male-to-female transsexuals: results of surgery.

Yang CY, Palmer AD, Murray KD, Meltzer TR, Cohen JI.

Ann Otol Rhinol Laryngol. 2002 Jun;111(6):477-85.


Characterisation of LMD virus-like nanoparticles self-assembled from cationic liposomes, adenovirus core peptide mu and plasmid DNA.

Tagawa T, Manvell M, Brown N, Keller M, Perouzel E, Murray KD, Harbottle RP, Tecle M, Booy F, Brahimi-Horn MC, Coutelle C, Lemoine NR, Alton EW, Miller AD.

Gene Ther. 2002 May;9(9):564-76.


Inhibition of polyglutamine aggregation in R6/2 HD brain slices-complex dose-response profiles.

Smith DL, Portier R, Woodman B, Hockly E, Mahal A, Klunk WE, Li XJ, Wanker E, Murray KD, Bates GP.

Neurobiol Dis. 2001 Dec;8(6):1017-26.


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