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Items: 38

1.

The newly-arisen Devil facial tumour disease 2 (DFT2) reveals a mechanism for the emergence of a contagious cancer.

Caldwell A, Coleby R, Tovar C, Stammnitz MR, Kwon YM, Owen RS, Tringides M, Murchison EP, Skjødt K, Thomas GJ, Kaufman J, Elliott T, Woods GM, Siddle HV.

Elife. 2018 Aug 14;7. pii: e35314. doi: 10.7554/eLife.35314.

2.

The evolutionary history of dogs in the Americas.

Ní Leathlobhair M, Perri AR, Irving-Pease EK, Witt KE, Linderholm A, Haile J, Lebrasseur O, Ameen C, Blick J, Boyko AR, Brace S, Cortes YN, Crockford SJ, Devault A, Dimopoulos EA, Eldridge M, Enk J, Gopalakrishnan S, Gori K, Grimes V, Guiry E, Hansen AJ, Hulme-Beaman A, Johnson J, Kitchen A, Kasparov AK, Kwon YM, Nikolskiy PA, Lope CP, Manin A, Martin T, Meyer M, Myers KN, Omura M, Rouillard JM, Pavlova EY, Sciulli P, Sinding MS, Strakova A, Ivanova VV, Widga C, Willerslev E, Pitulko VV, Barnes I, Gilbert MTP, Dobney KM, Malhi RS, Murchison EP, Larson G, Frantz LAF.

Science. 2018 Jul 6;361(6397):81-85. doi: 10.1126/science.aao4776.

PMID:
29976825
3.

The Origins and Vulnerabilities of Two Transmissible Cancers in Tasmanian Devils.

Stammnitz MR, Coorens THH, Gori KC, Hayes D, Fu B, Wang J, Martin-Herranz DE, Alexandrov LB, Baez-Ortega A, Barthorpe S, Beck A, Giordano F, Knowles GW, Kwon YM, Hall G, Price S, Pye RJ, Tubio JMC, Siddle HVT, Sohal SS, Woods GM, McDermott U, Yang F, Garnett MJ, Ning Z, Murchison EP.

Cancer Cell. 2018 Apr 9;33(4):607-619.e15. doi: 10.1016/j.ccell.2018.03.013.

4.

scanPAV: a pipeline for extracting presence-absence variations in genome pairs.

Giordano F, Stammnitz MR, Murchison EP, Ning Z.

Bioinformatics. 2018 Mar 28. doi: 10.1093/bioinformatics/bty189. [Epub ahead of print]

5.

No evidence for clonal transmission of urogenital carcinoma in California sea lions ( Zalophus californianus).

Ní Leathlobhair M, Gulland FMD, Murchison EP.

Wellcome Open Res. 2017 Jun 22;2:46. doi: 10.12688/wellcomeopenres.11483.1. eCollection 2017.

6.

Rapid evolutionary response to a transmissible cancer in Tasmanian devils.

Epstein B, Jones M, Hamede R, Hendricks S, McCallum H, Murchison EP, Schönfeld B, Wiench C, Hohenlohe P, Storfer A.

Nat Commun. 2016 Aug 30;7:12684. doi: 10.1038/ncomms12684.

7.

Cancer in the Wilderness.

Murchison EP.

Cell. 2016 Jul 14;166(2):264-268. doi: 10.1016/j.cell.2016.06.050.

8.

Cancer: Transmissible tumours under the sea.

Murchison EP.

Nature. 2016 Jun 30;534(7609):628-9. Epub 2016 Jun 22. No abstract available.

PMID:
27350242
9.

Mitochondrial genetic diversity, selection and recombination in a canine transmissible cancer.

Strakova A, Ní Leathlobhair M, Wang GD, Yin TT, Airikkala-Otter I, Allen JL, Allum KM, Bansse-Issa L, Bisson JL, Castillo Domracheva A, de Castro KF, Corrigan AM, Cran HR, Crawford JT, Cutter SM, Delgadillo Keenan L, Donelan EM, Faramade IA, Flores Reynoso E, Fotopoulou E, Fruean SN, Gallardo-Arrieta F, Glebova O, Häfelin Manrique RF, Henriques JJ, Ignatenko N, Koenig D, Lanza-Perea M, Lobetti R, Lopez Quintana AM, Losfelt T, Marino G, Martincorena I, Martínez Castañeda S, Martínez-López MF, Meyer M, Nakanwagi B, De Nardi AB, Neunzig W, Nixon SJ, Onsare MM, Ortega-Pacheco A, Peleteiro MC, Pye RJ, Reece JF, Rojas Gutierrez J, Sadia H, Schmeling SK, Shamanova O, Ssuna RK, Steenland-Smit AE, Svitich A, Thoya Ngoka I, Vițălaru BA, de Vos AP, de Vos JP, Walkinton O, Wedge DC, Wehrle-Martinez AS, van der Wel MG, Widdowson SA, Murchison EP.

Elife. 2016 May 17;5. pii: e14552. doi: 10.7554/eLife.14552.

10.

Evaluation of a genetic assay for canine transmissible venereal tumour diagnosis in Brazil.

Castro KF, Strakova A, Tinucci-Costa M, Murchison EP.

Vet Comp Oncol. 2017 Jun;15(2):615-618. doi: 10.1111/vco.12205. Epub 2016 May 2.

PMID:
27135875
11.

A second transmissible cancer in Tasmanian devils.

Pye RJ, Pemberton D, Tovar C, Tubio JM, Dun KA, Fox S, Darby J, Hayes D, Knowles GW, Kreiss A, Siddle HV, Swift K, Lyons AB, Murchison EP, Woods GM.

Proc Natl Acad Sci U S A. 2016 Jan 12;113(2):374-9. doi: 10.1073/pnas.1519691113. Epub 2015 Dec 28.

12.

Transmissible cancer in Tasmanian devils: localized lineage replacement and host population response.

Hamede RK, Pearse AM, Swift K, Barmuta LA, Murchison EP, Jones ME.

Proc Biol Sci. 2015 Sep 7;282(1814). pii: 20151468. doi: 10.1098/rspb.2015.1468.

13.

The cancer which survived: insights from the genome of an 11000 year-old cancer.

Strakova A, Murchison EP.

Curr Opin Genet Dev. 2015 Feb;30:49-55. doi: 10.1016/j.gde.2015.03.005. Epub 2015 Apr 11. Review.

PMID:
25867244
14.

Enhancer evolution across 20 mammalian species.

Villar D, Berthelot C, Aldridge S, Rayner TF, Lukk M, Pignatelli M, Park TJ, Deaville R, Erichsen JT, Jasinska AJ, Turner JM, Bertelsen MF, Murchison EP, Flicek P, Odom DT.

Cell. 2015 Jan 29;160(3):554-66. doi: 10.1016/j.cell.2015.01.006.

15.

The changing global distribution and prevalence of canine transmissible venereal tumour.

Strakova A, Murchison EP.

BMC Vet Res. 2014 Sep 3;10:168. doi: 10.1186/s12917-014-0168-9.

16.

Transmissible [corrected] dog cancer genome reveals the origin and history of an ancient cell lineage.

Murchison EP, Wedge DC, Alexandrov LB, Fu B, Martincorena I, Ning Z, Tubio JMC, Werner EI, Allen J, De Nardi AB, Donelan EM, Marino G, Fassati A, Campbell PJ, Yang F, Burt A, Weiss RA, Stratton MR.

Science. 2014 Jan 24;343(6169):437-440. doi: 10.1126/science.1247167. Erratum in: Science. 2014 Feb 14;343(6172):730.

17.

Deregulated sex chromosome gene expression with male germ cell-specific loss of Dicer1.

Greenlee AR, Shiao MS, Snyder E, Buaas FW, Gu T, Stearns TM, Sharma M, Murchison EP, Puente GC, Braun RE.

PLoS One. 2012;7(10):e46359. doi: 10.1371/journal.pone.0046359. Epub 2012 Oct 4.

18.

Extreme telomere length dimorphism in the Tasmanian devil and related marsupials suggests parental control of telomere length.

Bender HS, Murchison EP, Pickett HA, Deakin JE, Strong MA, Conlan C, McMillan DA, Neumann AA, Greider CW, Hannon GJ, Reddel RR, Graves JA.

PLoS One. 2012;7(9):e46195. doi: 10.1371/journal.pone.0046195. Epub 2012 Sep 25.

19.

Expansion of CORE-SINEs in the genome of the Tasmanian devil.

Nilsson MA, Janke A, Murchison EP, Ning Z, Hallström BM.

BMC Genomics. 2012 May 6;13:172. doi: 10.1186/1471-2164-13-172.

20.

Genomic restructuring in the Tasmanian devil facial tumour: chromosome painting and gene mapping provide clues to evolution of a transmissible tumour.

Deakin JE, Bender HS, Pearse AM, Rens W, O'Brien PC, Ferguson-Smith MA, Cheng Y, Morris K, Taylor R, Stuart A, Belov K, Amemiya CT, Murchison EP, Papenfuss AT, Graves JA.

PLoS Genet. 2012;8(2):e1002483. doi: 10.1371/journal.pgen.1002483. Epub 2012 Feb 16. Erratum in: PLoS Genet. 2014 Oct;10(10):e1004840.

21.

Genome sequencing and analysis of the Tasmanian devil and its transmissible cancer.

Murchison EP, Schulz-Trieglaff OB, Ning Z, Alexandrov LB, Bauer MJ, Fu B, Hims M, Ding Z, Ivakhno S, Stewart C, Ng BL, Wong W, Aken B, White S, Alsop A, Becq J, Bignell GR, Cheetham RK, Cheng W, Connor TR, Cox AJ, Feng ZP, Gu Y, Grocock RJ, Harris SR, Khrebtukova I, Kingsbury Z, Kowarsky M, Kreiss A, Luo S, Marshall J, McBride DJ, Murray L, Pearse AM, Raine K, Rasolonjatovo I, Shaw R, Tedder P, Tregidgo C, Vilella AJ, Wedge DC, Woods GM, Gormley N, Humphray S, Schroth G, Smith G, Hall K, Searle SM, Carter NP, Papenfuss AT, Futreal PA, Campbell PJ, Yang F, Bentley DR, Evers DJ, Stratton MR.

Cell. 2012 Feb 17;148(4):780-91. doi: 10.1016/j.cell.2011.11.065.

22.

Identification and validation of a novel mature microRNA encoded by the Merkel cell polyomavirus in human Merkel cell carcinomas.

Lee S, Paulson KG, Murchison EP, Afanasiev OK, Alkan C, Leonard JH, Byrd DR, Hannon GJ, Nghiem P.

J Clin Virol. 2011 Nov;52(3):272-5. doi: 10.1016/j.jcv.2011.08.012. Epub 2011 Sep 9.

23.

Sequencing skippy: the genome sequence of an Australian kangaroo, Macropus eugenii.

Murchison EP, Adams DJ.

Genome Biol. 2011 Aug 19;12(8):123. doi: 10.1186/gb-2011-12-8-123.

24.

Ordered progression of stage-specific miRNA profiles in the mouse B2 B-cell lineage.

Spierings DC, McGoldrick D, Hamilton-Easton AM, Neale G, Murchison EP, Hannon GJ, Green DR, Withoff S.

Blood. 2011 May 19;117(20):5340-9. doi: 10.1182/blood-2010-10-316034. Epub 2011 Mar 14.

25.

Tumor-specific diagnostic marker for transmissible facial tumors of Tasmanian devils: immunohistochemistry studies.

Tovar C, Obendorf D, Murchison EP, Papenfuss AT, Kreiss A, Woods GM.

Vet Pathol. 2011 Nov;48(6):1195-203. doi: 10.1177/0300985811400447. Epub 2011 Mar 7.

PMID:
21383118
26.

The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer.

Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT.

Science. 2010 Jan 1;327(5961):84-7. doi: 10.1126/science.1180616.

27.

Clonally transmissible cancers in dogs and Tasmanian devils.

Murchison EP.

Oncogene. 2008 Dec;27 Suppl 2:S19-30. doi: 10.1038/onc.2009.350. Review.

PMID:
19956175
28.

miRNAs are essential for survival and differentiation of newborn neurons but not for expansion of neural progenitors during early neurogenesis in the mouse embryonic neocortex.

De Pietri Tonelli D, Pulvers JN, Haffner C, Murchison EP, Hannon GJ, Huttner WB.

Development. 2008 Dec;135(23):3911-21. doi: 10.1242/dev.025080.

29.

Genome analysis of the platypus reveals unique signatures of evolution.

Warren WC, Hillier LW, Marshall Graves JA, Birney E, Ponting CP, Grützner F, Belov K, Miller W, Clarke L, Chinwalla AT, Yang SP, Heger A, Locke DP, Miethke P, Waters PD, Veyrunes F, Fulton L, Fulton B, Graves T, Wallis J, Puente XS, López-Otín C, Ordóñez GR, Eichler EE, Chen L, Cheng Z, Deakin JE, Alsop A, Thompson K, Kirby P, Papenfuss AT, Wakefield MJ, Olender T, Lancet D, Huttley GA, Smit AF, Pask A, Temple-Smith P, Batzer MA, Walker JA, Konkel MK, Harris RS, Whittington CM, Wong ES, Gemmell NJ, Buschiazzo E, Vargas Jentzsch IM, Merkel A, Schmitz J, Zemann A, Churakov G, Kriegs JO, Brosius J, Murchison EP, Sachidanandam R, Smith C, Hannon GJ, Tsend-Ayush E, McMillan D, Attenborough R, Rens W, Ferguson-Smith M, Lefèvre CM, Sharp JA, Nicholas KR, Ray DA, Kube M, Reinhardt R, Pringle TH, Taylor J, Jones RC, Nixon B, Dacheux JL, Niwa H, Sekita Y, Huang X, Stark A, Kheradpour P, Kellis M, Flicek P, Chen Y, Webber C, Hardison R, Nelson J, Hallsworth-Pepin K, Delehaunty K, Markovic C, Minx P, Feng Y, Kremitzki C, Mitreva M, Glasscock J, Wylie T, Wohldmann P, Thiru P, Nhan MN, Pohl CS, Smith SM, Hou S, Nefedov M, de Jong PJ, Renfree MB, Mardis ER, Wilson RK.

Nature. 2008 May 8;453(7192):175-83. doi: 10.1038/nature06936. Erratum in: Nature. 2008 Sep 11;455(7210):256. Nefedov, Mikhail [added]; de Jong, Pieter J [added].

30.

Conservation of small RNA pathways in platypus.

Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grützner F, Stark A, Hannon GJ.

Genome Res. 2008 Jun;18(6):995-1004. doi: 10.1101/gr.073056.107. Epub 2008 May 7.

31.

Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes.

Tam OH, Aravin AA, Stein P, Girard A, Murchison EP, Cheloufi S, Hodges E, Anger M, Sachidanandam R, Schultz RM, Hannon GJ.

Nature. 2008 May 22;453(7194):534-8. doi: 10.1038/nature06904. Epub 2008 Apr 10.

32.

Targeted deletion of Dicer in the heart leads to dilated cardiomyopathy and heart failure.

Chen JF, Murchison EP, Tang R, Callis TE, Tatsuguchi M, Deng Z, Rojas M, Hammond SM, Schneider MD, Selzman CH, Meissner G, Patterson C, Hannon GJ, Wang DZ.

Proc Natl Acad Sci U S A. 2008 Feb 12;105(6):2111-6. doi: 10.1073/pnas.0710228105. Epub 2008 Feb 6.

33.

The expanding universe of noncoding RNAs.

Hannon GJ, Rivas FV, Murchison EP, Steitz JA.

Cold Spring Harb Symp Quant Biol. 2006;71:551-64. Review.

PMID:
17381339
34.

Critical roles for Dicer in the female germline.

Murchison EP, Stein P, Xuan Z, Pan H, Zhang MQ, Schultz RM, Hannon GJ.

Genes Dev. 2007 Mar 15;21(6):682-93.

35.

The miRNA-processing enzyme dicer is essential for the morphogenesis and maintenance of hair follicles.

Andl T, Murchison EP, Liu F, Zhang Y, Yunta-Gonzalez M, Tobias JW, Andl CD, Seykora JT, Hannon GJ, Millar SE.

Curr Biol. 2006 May 23;16(10):1041-9. Epub 2006 May 11.

36.

Characterization of Dicer-deficient murine embryonic stem cells.

Murchison EP, Partridge JF, Tam OH, Cheloufi S, Hannon GJ.

Proc Natl Acad Sci U S A. 2005 Aug 23;102(34):12135-40. Epub 2005 Aug 12.

37.

miRNAs on the move: miRNA biogenesis and the RNAi machinery.

Murchison EP, Hannon GJ.

Curr Opin Cell Biol. 2004 Jun;16(3):223-9. Review.

PMID:
15145345
38.

Dicer is essential for mouse development.

Bernstein E, Kim SY, Carmell MA, Murchison EP, Alcorn H, Li MZ, Mills AA, Elledge SJ, Anderson KV, Hannon GJ.

Nat Genet. 2003 Nov;35(3):215-7. Epub 2003 Oct 5. Erratum in: Nat Genet. 2003 Nov;35(3):287.

PMID:
14528307

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