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Dynamic non-photochemical quenching in plants: from molecular mechanism to productivity.

Murchie EH, Ruban AV.

Plant J. 2020 Feb;101(4):885-896. doi: 10.1111/tpj.14601. Epub 2019 Dec 12.


Author Correction: Rice plants overexpressing OsEPF1 show reduced stomatal density and increased root cortical aerenchyma formation.

Mohammed U, Caine RS, Atkinson JA, Harrison EL, Wells D, Chater CC, Gray JE, Swarup R, Murchie EH.

Sci Rep. 2019 Oct 10;9(1):14827. doi: 10.1038/s41598-019-51402-7.


PTEN Loss Mediates Clinical Cross-Resistance to CDK4/6 and PI3Kα Inhibitors in Breast Cancer.

Costa C, Wang Y, Ly A, Hosono Y, Murchie E, Walmsley CS, Huynh T, Healy C, Peterson R, Yanase S, Jakubik CT, Henderson LE, Damon LJ, Timonina D, Sanidas I, Pinto CJ, Mino-Kenudson M, Stone JR, Dyson NJ, Ellisen LW, Bardia A, Ebi H, Benes CH, Engelman JA, Juric D.

Cancer Discov. 2020 Jan;10(1):72-85. doi: 10.1158/2159-8290.CD-18-0830. Epub 2019 Oct 8.


High throughput procedure utilising chlorophyll fluorescence imaging to phenotype dynamic photosynthesis and photoprotection in leaves under controlled gaseous conditions.

McAusland L, Atkinson JA, Lawson T, Murchie EH.

Plant Methods. 2019 Sep 18;15:109. doi: 10.1186/s13007-019-0485-x. eCollection 2019.


Recovering Wind-Induced Plant Motion in Dense Field Environments via Deep Learning and Multiple Object Tracking.

Gibbs JA, Burgess AJ, Pound MP, Pridmore TP, Murchie EH.

Plant Physiol. 2019 Sep;181(1):28-42. doi: 10.1104/pp.19.00141. Epub 2019 Jul 22.


Active Vision and Surface Reconstruction for 3D Plant Shoot Modelling.

Gibbs JA, Pound M, French A, Wells D, Murchie E, Pridmore T.

IEEE/ACM Trans Comput Biol Bioinform. 2019 Apr 25. doi: 10.1109/TCBB.2019.2896908. [Epub ahead of print]


Rice plants overexpressing OsEPF1 show reduced stomatal density and increased root cortical aerenchyma formation.

Mohammed U, Caine RS, Atkinson JA, Harrison EL, Wells D, Chater CC, Gray JE, Swarup R, Murchie EH.

Sci Rep. 2019 Apr 3;9(1):5584. doi: 10.1038/s41598-019-41922-7. Erratum in: Sci Rep. 2019 Oct 10;9(1):14827.


A canopy conundrum: can wind-induced movement help to increase crop productivity by relieving photosynthetic limitations?

Burgess AJ, Gibbs JA, Murchie EH.

J Exp Bot. 2019 Apr 29;70(9):2371-2380. doi: 10.1093/jxb/ery424.


KRAS G12C NSCLC Models Are Sensitive to Direct Targeting of KRAS in Combination with PI3K Inhibition.

Misale S, Fatherree JP, Cortez E, Li C, Bilton S, Timonina D, Myers DT, Lee D, Gomez-Caraballo M, Greenberg M, Nangia V, Greninger P, Egan RK, McClanaghan J, Stein GT, Murchie E, Zarrinkar PP, Janes MR, Li LS, Liu Y, Hata AN, Benes CH.

Clin Cancer Res. 2019 Jan 15;25(2):796-807. doi: 10.1158/1078-0432.CCR-18-0368. Epub 2018 Oct 16.


Enhanced thylakoid photoprotection can increase yield and canopy radiation use efficiency in rice.

Hubbart S, Smillie IRA, Heatley M, Swarup R, Foo CC, Zhao L, Murchie EH.

Commun Biol. 2018 Mar 22;1:22. doi: 10.1038/s42003-018-0026-6. eCollection 2018.


Plant Phenotyping: An Active Vision Cell for Three-Dimensional Plant Shoot Reconstruction.

Gibbs JA, Pound M, French AP, Wells DM, Murchie E, Pridmore T.

Plant Physiol. 2018 Oct;178(2):524-534. doi: 10.1104/pp.18.00664. Epub 2018 Aug 10.


Genetic variation in N-use efficiency and associated traits in Indian wheat cultivars.

Nehe AS, Misra S, Murchie EH, Chinnathambi K, Foulkes MJ.

Field Crops Res. 2018 Aug 1;225:152-162. doi: 10.1016/j.fcr.2018.06.002.


Erratum to: Deep machine learning provides state-of-the-art performance in image-based plant phenotyping.

Pound MP, Atkinson JA, Townsend AJ, Wilson MH, Griffiths M, Jackson AS, Bulat A, Tzimiropoulos G, Wells DM, Murchie EH, Pridmore TP, French AP.

Gigascience. 2018 Jul 1;7(7). doi: 10.1093/gigascience/giy042. No abstract available.


Rice with reduced stomatal density conserves water and has improved drought tolerance under future climate conditions.

Caine RS, Yin X, Sloan J, Harrison EL, Mohammed U, Fulton T, Biswal AK, Dionora J, Chater CC, Coe RA, Bandyopadhyay A, Murchie EH, Swarup R, Quick WP, Gray JE.

New Phytol. 2019 Jan;221(1):371-384. doi: 10.1111/nph.15344. Epub 2018 Jul 24.


Chlorophyll Fluorescence on the Fast Timescale.

Ajigboye OO, Ray RV, Murchie EH.

Methods Mol Biol. 2018;1770:95-104. doi: 10.1007/978-1-4939-7786-4_6.


Measuring the dynamic photosynthome.

Murchie EH, Kefauver S, Araus JL, Muller O, Rascher U, Flood PJ, Lawson T.

Ann Bot. 2018 Aug 1;122(2):207-220. doi: 10.1093/aob/mcy087. Review.


Three-dimensional plant architecture and sunlit-shaded patterns: a stochastic model of light dynamics in canopies.

Retkute R, Townsend AJ, Murchie EH, Jensen OE, Preston SP.

Ann Bot. 2018 Aug 1;122(2):291-302. doi: 10.1093/aob/mcy067.


Differential Effector Engagement by Oncogenic KRAS.

Yuan TL, Amzallag A, Bagni R, Yi M, Afghani S, Burgan W, Fer N, Strathern LA, Powell K, Smith B, Waters AM, Drubin D, Thomson T, Liao R, Greninger P, Stein GT, Murchie E, Cortez E, Egan RK, Procter L, Bess M, Cheng KT, Lee CS, Lee LC, Fellmann C, Stephens R, Luo J, Lowe SW, Benes CH, McCormick F.

Cell Rep. 2018 Feb 13;22(7):1889-1902. doi: 10.1016/j.celrep.2018.01.051.


Suboptimal Acclimation of Photosynthesis to Light in Wheat Canopies.

Townsend AJ, Retkute R, Chinnathambi K, Randall JWP, Foulkes J, Carmo-Silva E, Murchie EH.

Plant Physiol. 2018 Feb;176(2):1233-1246. doi: 10.1104/pp.17.01213. Epub 2017 Dec 7.


Increasing Leaf Vein Density via Mutagenesis in Rice Results in an Enhanced Rate of Photosynthesis, Smaller Cell Sizes and Can Reduce Interveinal Mesophyll Cell Number.

Feldman AB, Leung H, Baraoidan M, Elmido-Mabilangan A, Canicosa I, Quick WP, Sheehy J, Murchie EH.

Front Plant Sci. 2017 Nov 1;8:1883. doi: 10.3389/fpls.2017.01883. eCollection 2017.


Deep machine learning provides state-of-the-art performance in image-based plant phenotyping.

Pound MP, Atkinson JA, Townsend AJ, Wilson MH, Griffiths M, Jackson AS, Bulat A, Tzimiropoulos G, Wells DM, Murchie EH, Pridmore TP, French AP.

Gigascience. 2017 Oct 1;6(10):1-10. doi: 10.1093/gigascience/gix083. Erratum in: Gigascience. 2018 Jul 1;7(7):.


Don't ignore the green light: exploring diverse roles in plant processes.

Smith HL, McAusland L, Murchie EH.

J Exp Bot. 2017 Apr 1;68(9):2099-2110. doi: 10.1093/jxb/erx098. Review.


Exploring Relationships between Canopy Architecture, Light Distribution, and Photosynthesis in Contrasting Rice Genotypes Using 3D Canopy Reconstruction.

Burgess AJ, Retkute R, Herman T, Murchie EH.

Front Plant Sci. 2017 May 17;8:734. doi: 10.3389/fpls.2017.00734. eCollection 2017.


Safety conscious or living dangerously: what is the 'right' level of plant photoprotection for fitness and productivity?

Murchie EH.

Plant Cell Environ. 2017 Aug;40(8):1239-1242. doi: 10.1111/pce.12965. Epub 2017 Jun 2. No abstract available.


Altered gene expression by sedaxane increases PSII efficiency, photosynthesis and growth and improves tolerance to drought in wheat seedlings.

Ajigboye OO, Lu C, Murchie EH, Schlatter C, Swart G, Ray RV.

Pestic Biochem Physiol. 2017 Apr;137:49-61. doi: 10.1016/j.pestbp.2016.09.008. Epub 2016 Sep 29.


Image-based 3D canopy reconstruction to determine potential productivity in complex multi-species crop systems.

Burgess AJ, Retkute R, Pound MP, Mayes S, Murchie EH.

Ann Bot. 2017 Mar 1;119(4):517-532. doi: 10.1093/aob/mcw242.


The 4-Dimensional Plant: Effects of Wind-Induced Canopy Movement on Light Fluctuations and Photosynthesis.

Burgess AJ, Retkute R, Preston SP, Jensen OE, Pound MP, Pridmore TP, Murchie EH.

Front Plant Sci. 2016 Sep 21;7:1392. eCollection 2016.


Photoprotection as a Trait for Rice Yield Improvement: Status and Prospects.

Murchie EH, Ali A, Herman T.

Rice (N Y). 2015 Dec;8(1):31. doi: 10.1186/s12284-015-0065-2. Epub 2015 Sep 30.


High-Resolution Three-Dimensional Structural Data Quantify the Impact of Photoinhibition on Long-Term Carbon Gain in Wheat Canopies in the Field.

Burgess AJ, Retkute R, Pound MP, Foulkes J, Preston SP, Jensen OE, Pridmore TP, Murchie EH.

Plant Physiol. 2015 Oct;169(2):1192-204. doi: 10.1104/pp.15.00722. Epub 2015 Aug 17.


Exploiting heterogeneous environments: does photosynthetic acclimation optimize carbon gain in fluctuating light?

Retkute R, Smith-Unna SE, Smith RW, Burgess AJ, Jensen OE, Johnson GN, Preston SP, Murchie EH.

J Exp Bot. 2015 May;66(9):2437-47. doi: 10.1093/jxb/erv055. Epub 2015 Mar 18.


Leaf energy balance modelling as a tool to infer habitat preference in the early angiosperms.

Lee AP, Upchurch G Jr, Murchie EH, Lomax BH.

Proc Biol Sci. 2015 Mar 22;282(1803):20143052. doi: 10.1098/rspb.2014.3052.


Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.

Yu H, Murchie EH, González-Carranza ZH, Pyke KA, Roberts JA.

J Exp Bot. 2015 Mar;66(5):1543-52. doi: 10.1093/jxb/eru525. Epub 2015 Jan 11.


Automated recovery of three-dimensional models of plant shoots from multiple color images.

Pound MP, French AP, Murchie EH, Pridmore TP.

Plant Physiol. 2014 Dec;166(4):1688-98. doi: 10.1104/pp.114.248971. Epub 2014 Oct 20.


Foliar application of isopyrazam and epoxiconazole improves photosystem II efficiency, biomass and yield in winter wheat.

Ajigboye OO, Murchie E, Ray RV.

Pestic Biochem Physiol. 2014 Sep;114:52-60. doi: 10.1016/j.pestbp.2014.07.003. Epub 2014 Jul 17.


Increasing leaf vein density by mutagenesis: laying the foundations for C4 rice.

Feldman AB, Murchie EH, Leung H, Baraoidan M, Coe R, Yu SM, Lo SF, Quick WP.

PLoS One. 2014 Apr 23;9(4):e94947. doi: 10.1371/journal.pone.0094947. eCollection 2014.


Chlorophyll fluorescence analysis: a guide to good practice and understanding some new applications.

Murchie EH, Lawson T.

J Exp Bot. 2013 Oct;64(13):3983-98. doi: 10.1093/jxb/ert208. Epub 2013 Aug 3. Review.


Does growth under elevated CO₂ moderate photoacclimation in rice?

Hubbart S, Bird S, Lake JA, Murchie EH.

Physiol Plant. 2013 Jun;148(2):297-306. doi: 10.1111/j.1399-3054.2012.01702.x. Epub 2012 Oct 26.


Achieving yield gains in wheat.

Reynolds M, Foulkes J, Furbank R, Griffiths S, King J, Murchie E, Parry M, Slafer G.

Plant Cell Environ. 2012 Oct;35(10):1799-823. doi: 10.1111/j.1365-3040.2012.02588.x. Epub 2012 Aug 20. Review.


Variation in vein density and mesophyll cell architecture in a rice deletion mutant population.

Smillie IR, Pyke KA, Murchie EH.

J Exp Bot. 2012 Jul;63(12):4563-70. doi: 10.1093/jxb/ers142. Epub 2012 Jun 8.


Assessing the photoprotective effectiveness of non-photochemical chlorophyll fluorescence quenching: a new approach.

Ruban AV, Murchie EH.

Biochim Biophys Acta. 2012 Jul;1817(7):977-82. doi: 10.1016/j.bbabio.2012.03.026. Epub 2012 Apr 1.


The photoprotective protein PsbS exerts control over CO(2) assimilation rate in fluctuating light in rice.

Hubbart S, Ajigboye OO, Horton P, Murchie EH.

Plant J. 2012 Aug;71(3):402-12. doi: 10.1111/j.1365-313X.2012.04995.x. Epub 2012 Jun 5.


Gas exchange measurements for the determination of photosynthetic efficiency in Arabidopsis leaves.

Johnson G, Murchie E.

Methods Mol Biol. 2011;775:311-26. doi: 10.1007/978-1-61779-237-3_17.


Manipulation of photoprotection to improve plant photosynthesis.

Murchie EH, Niyogi KK.

Plant Physiol. 2011 Jan;155(1):86-92. doi: 10.1104/pp.110.168831. Epub 2010 Nov 17. Review. No abstract available.


Agriculture and the new challenges for photosynthesis research.

Murchie EH, Pinto M, Horton P.

New Phytol. 2009;181(3):532-52. doi: 10.1111/j.1469-8137.2008.02705.x. Epub 2008 Dec 18. Review.


Trends in leaf photosynthesis in historical rice varieties developed in the Philippines since 1966.

Hubbart S, Peng S, Horton P, Chen Y, Murchie EH.

J Exp Bot. 2007;58(12):3429-38. Epub 2007 Sep 17.


The identification of genes involved in the stomatal response to reduced atmospheric relative humidity.

Xie X, Wang Y, Williamson L, Holroyd GH, Tagliavia C, Murchie E, Theobald J, Knight MR, Davies WJ, Leyser HM, Hetherington AM.

Curr Biol. 2006 May 9;16(9):882-7.


Differential adaptation of two varieties of common bean to abiotic stress: II. Acclimation of photosynthesis.

Wentworth M, Murchie EH, Gray JE, Villegas D, Pastenes C, Pinto M, Horton P.

J Exp Bot. 2006;57(3):699-709. Epub 2006 Jan 16.


Differential adaptation of two varieties of common bean to abiotic stress: I. Effects of drought on yield and photosynthesis.

Lizana C, Wentworth M, Martinez JP, Villegas D, Meneses R, Murchie EH, Pastenes C, Lercari B, Vernieri P, Horton P, Pinto M.

J Exp Bot. 2006;57(3):685-97. Epub 2006 Jan 16.


Acclimation of photosynthesis to high irradiance in rice: gene expression and interactions with leaf development.

Murchie EH, Hubbart S, Peng S, Horton P.

J Exp Bot. 2005 Jan;56(411):449-60. Epub 2005 Jan 12.


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