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Items: 17

1.

Analysis of 1508 Plasma Samples by Capillary-Flow Data-Independent Acquisition Profiles Proteomics of Weight Loss and Maintenance.

Bruderer R, Muntel J, Müller S, Bernhardt OM, Gandhi T, Cominetti O, Macron C, Carayol J, Rinner O, Astrup A, Saris WHM, Hager J, Valsesia A, Dayon L, Reiter L.

Mol Cell Proteomics. 2019 Jun;18(6):1242-1254. doi: 10.1074/mcp.RA118.001288. Epub 2019 Apr 4.

2.

Comparison of Protein Quantification in a Complex Background by DIA and TMT Workflows with Fixed Instrument Time.

Muntel J, Kirkpatrick J, Bruderer R, Huang T, Vitek O, Ori A, Reiter L.

J Proteome Res. 2019 Mar 1;18(3):1340-1351. doi: 10.1021/acs.jproteome.8b00898. Epub 2019 Feb 20.

PMID:
30726097
3.

Multisystem Analysis of Mycobacterium tuberculosis Reveals Kinase-Dependent Remodeling of the Pathogen-Environment Interface.

Carette X, Platig J, Young DC, Helmel M, Young AT, Wang Z, Potluri LP, Moody CS, Zeng J, Prisic S, Paulson JN, Muntel J, Madduri AVR, Velarde J, Mayfield JA, Locher C, Wang T, Quackenbush J, Rhee KY, Moody DB, Steen H, Husson RN.

MBio. 2018 Mar 6;9(2). pii: e02333-17. doi: 10.1128/mBio.02333-17.

4.

Costs of life - Dynamics of the protein inventory of Staphylococcus aureus during anaerobiosis.

Zühlke D, Dörries K, Bernhardt J, Maaß S, Muntel J, Liebscher V, Pané-Farré J, Riedel K, Lalk M, Völker U, Engelmann S, Becher D, Fuchs S, Hecker M.

Sci Rep. 2016 Jun 27;6:28172. doi: 10.1038/srep28172.

5.

FLEXITau: Quantifying Post-translational Modifications of Tau Protein in Vitro and in Human Disease.

Mair W, Muntel J, Tepper K, Tang S, Biernat J, Seeley WW, Kosik KS, Mandelkow E, Steen H, Steen JA.

Anal Chem. 2016 Apr 5;88(7):3704-14. doi: 10.1021/acs.analchem.5b04509. Epub 2016 Mar 7.

6.

Quantitative prediction of genome-wide resource allocation in bacteria.

Goelzer A, Muntel J, Chubukov V, Jules M, Prestel E, Nölker R, Mariadassou M, Aymerich S, Hecker M, Noirot P, Becher D, Fromion V.

Metab Eng. 2015 Nov;32:232-243. doi: 10.1016/j.ymben.2015.10.003. Epub 2015 Oct 21.

PMID:
26498510
7.

Advancing Urinary Protein Biomarker Discovery by Data-Independent Acquisition on a Quadrupole-Orbitrap Mass Spectrometer.

Muntel J, Xuan Y, Berger ST, Reiter L, Bachur R, Kentsis A, Steen H.

J Proteome Res. 2015 Nov 6;14(11):4752-62. doi: 10.1021/acs.jproteome.5b00826. Epub 2015 Oct 22.

8.

MStern Blotting-High Throughput Polyvinylidene Fluoride (PVDF) Membrane-Based Proteomic Sample Preparation for 96-Well Plates.

Berger ST, Ahmed S, Muntel J, Cuevas Polo N, Bachur R, Kentsis A, Steen J, Steen H.

Mol Cell Proteomics. 2015 Oct;14(10):2814-23. doi: 10.1074/mcp.O115.049650. Epub 2015 Jul 29.

9.

First description of small proteins encoded by spRNAs in Methanosarcina mazei strain Gö1.

Prasse D, Thomsen J, De Santis R, Muntel J, Becher D, Schmitz RA.

Biochimie. 2015 Oct;117:138-48. doi: 10.1016/j.biochi.2015.04.007. Epub 2015 Apr 16.

PMID:
25890157
10.

Abundance-based classifier for the prediction of mass spectrometric peptide detectability upon enrichment (PPA).

Muntel J, Boswell SA, Tang S, Ahmed S, Wapinski I, Foley G, Steen H, Springer M.

Mol Cell Proteomics. 2015 Feb;14(2):430-40. doi: 10.1074/mcp.M114.044321. Epub 2014 Dec 3.

11.

Comprehensive absolute quantification of the cytosolic proteome of Bacillus subtilis by data independent, parallel fragmentation in liquid chromatography/mass spectrometry (LC/MS(E)).

Muntel J, Fromion V, Goelzer A, Maaβ S, Mäder U, Büttner K, Hecker M, Becher D.

Mol Cell Proteomics. 2014 Apr;13(4):1008-19. doi: 10.1074/mcp.M113.032631. Epub 2014 Jan 31.

12.

Stress responses of the industrial workhorse Bacillus licheniformis to osmotic challenges.

Schroeter R, Hoffmann T, Voigt B, Meyer H, Bleisteiner M, Muntel J, Jürgen B, Albrecht D, Becher D, Lalk M, Evers S, Bongaerts J, Maurer KH, Putzer H, Hecker M, Schweder T, Bremer E.

PLoS One. 2013 Nov 15;8(11):e80956. doi: 10.1371/journal.pone.0080956. eCollection 2013.

13.

SweetSEQer, simple de novo filtering and annotation of glycoconjugate mass spectra.

Serang O, Froehlich JW, Muntel J, McDowell G, Steen H, Lee RS, Steen JA.

Mol Cell Proteomics. 2013 Jun;12(6):1735-40. doi: 10.1074/mcp.O112.025940. Epub 2013 Feb 26.

14.

Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism.

Buescher JM, Liebermeister W, Jules M, Uhr M, Muntel J, Botella E, Hessling B, Kleijn RJ, Le Chat L, Lecointe F, Mäder U, Nicolas P, Piersma S, Rügheimer F, Becher D, Bessieres P, Bidnenko E, Denham EL, Dervyn E, Devine KM, Doherty G, Drulhe S, Felicori L, Fogg MJ, Goelzer A, Hansen A, Harwood CR, Hecker M, Hubner S, Hultschig C, Jarmer H, Klipp E, Leduc A, Lewis P, Molina F, Noirot P, Peres S, Pigeonneau N, Pohl S, Rasmussen S, Rinn B, Schaffer M, Schnidder J, Schwikowski B, Van Dijl JM, Veiga P, Walsh S, Wilkinson AJ, Stelling J, Aymerich S, Sauer U.

Science. 2012 Mar 2;335(6072):1099-103. doi: 10.1126/science.1206871.

15.

An exclusion list based label-free proteome quantification approach using an LTQ Orbitrap.

Muntel J, Hecker M, Becher D.

Rapid Commun Mass Spectrom. 2012 Mar 30;26(6):701-9. doi: 10.1002/rcm.6147.

PMID:
22328225
16.

The dynamic protein partnership of RNA polymerase in Bacillus subtilis.

Delumeau O, Lecointe F, Muntel J, Guillot A, Guédon E, Monnet V, Hecker M, Becher D, Polard P, Noirot P.

Proteomics. 2011 Aug;11(15):2992-3001. doi: 10.1002/pmic.201000790. Epub 2011 Jun 28.

PMID:
21710567
17.

Efficient, global-scale quantification of absolute protein amounts by integration of targeted mass spectrometry and two-dimensional gel-based proteomics.

Maass S, Sievers S, Zühlke D, Kuzinski J, Sappa PK, Muntel J, Hessling B, Bernhardt J, Sietmann R, Völker U, Hecker M, Becher D.

Anal Chem. 2011 Apr 1;83(7):2677-84. doi: 10.1021/ac1031836. Epub 2011 Mar 11.

PMID:
21395229

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