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Items: 1 to 50 of 136

1.

Multi-platform discovery of haplotype-resolved structural variation in human genomes.

Chaisson MJP, Sanders AD, Zhao X, Malhotra A, Porubsky D, Rausch T, Gardner EJ, Rodriguez OL, Guo L, Collins RL, Fan X, Wen J, Handsaker RE, Fairley S, Kronenberg ZN, Kong X, Hormozdiari F, Lee D, Wenger AM, Hastie AR, Antaki D, Anantharaman T, Audano PA, Brand H, Cantsilieris S, Cao H, Cerveira E, Chen C, Chen X, Chin CS, Chong Z, Chuang NT, Lambert CC, Church DM, Clarke L, Farrell A, Flores J, Galeev T, Gorkin DU, Gujral M, Guryev V, Heaton WH, Korlach J, Kumar S, Kwon JY, Lam ET, Lee JE, Lee J, Lee WP, Lee SP, Li S, Marks P, Viaud-Martinez K, Meiers S, Munson KM, Navarro FCP, Nelson BJ, Nodzak C, Noor A, Kyriazopoulou-Panagiotopoulou S, Pang AWC, Qiu Y, Rosanio G, Ryan M, Stütz A, Spierings DCJ, Ward A, Welch AE, Xiao M, Xu W, Zhang C, Zhu Q, Zheng-Bradley X, Lowy E, Yakneen S, McCarroll S, Jun G, Ding L, Koh CL, Ren B, Flicek P, Chen K, Gerstein MB, Kwok PY, Lansdorp PM, Marth GT, Sebat J, Shi X, Bashir A, Ye K, Devine SE, Talkowski ME, Mills RE, Marschall T, Korbel JO, Eichler EE, Lee C.

Nat Commun. 2019 Apr 16;10(1):1784. doi: 10.1038/s41467-018-08148-z.

2.

Outcome of Electronic Order Alert Intervention Relative to Toxigenic Clostridium difficile PCR Analysis and Hospital-Onset C difficile Infection in a Multihospital Health Care System.

Munson E, Rodriguez S, Riederer N, Munson KL, Block D, Land G, Stone R, Villalobos A, Dewey E, Block TK.

Am J Clin Pathol. 2019 May 3;151(6):622-627. doi: 10.1093/ajcp/aqz022.

PMID:
30989227
3.

pH-dependent gating mechanism of the Helicobacter pylori urea channel revealed by cryo-EM.

Cui Y, Zhou K, Strugatsky D, Wen Y, Sachs G, Zhou ZH, Munson K.

Sci Adv. 2019 Mar 20;5(3):eaav8423. doi: 10.1126/sciadv.aav8423. eCollection 2019 Mar.

4.

Subsurface seawater methylmercury maximum explains biotic mercury concentrations in the Canadian Arctic.

Wang K, Munson KM, Beaupré-Laperrière A, Mucci A, Macdonald RW, Wang F.

Sci Rep. 2018 Sep 27;8(1):14465. doi: 10.1038/s41598-018-32760-0.

5.

Transcriptional fates of human-specific segmental duplications in brain.

Dougherty ML, Underwood JG, Nelson BJ, Tseng E, Munson KM, Penn O, Nowakowski TJ, Pollen AA, Eichler EE.

Genome Res. 2018 Oct;28(10):1566-1576. doi: 10.1101/gr.237610.118. Epub 2018 Sep 18.

6.

Editorial: control of acid secretion.

Sachs G, Marcus EA, Wen Y, Munson K.

Aliment Pharmacol Ther. 2018 Sep;48(6):682-683. doi: 10.1111/apt.14864. No abstract available.

7.

High-resolution comparative analysis of great ape genomes.

Kronenberg ZN, Fiddes IT, Gordon D, Murali S, Cantsilieris S, Meyerson OS, Underwood JG, Nelson BJ, Chaisson MJP, Dougherty ML, Munson KM, Hastie AR, Diekhans M, Hormozdiari F, Lorusso N, Hoekzema K, Qiu R, Clark K, Raja A, Welch AE, Sorensen M, Baker C, Fulton RS, Armstrong J, Graves-Lindsay TA, Denli AM, Hoppe ER, Hsieh P, Hill CM, Pang AWC, Lee J, Lam ET, Dutcher SK, Gage FH, Warren WC, Shendure J, Haussler D, Schneider VA, Cao H, Ventura M, Wilson RK, Paten B, Pollen A, Eichler EE.

Science. 2018 Jun 8;360(6393). pii: eaar6343. doi: 10.1126/science.aar6343.

8.

Electron-Phonon Coupling and Resonant Relaxation from 1D and 1P States in PbS Quantum Dots.

Kennehan ER, Doucette GS, Marshall AR, Grieco C, Munson KT, Beard MC, Asbury JB.

ACS Nano. 2018 Jun 26;12(6):6263-6272. doi: 10.1021/acsnano.8b03216. Epub 2018 May 31.

PMID:
29792675
9.

Recurrent structural variation, clustered sites of selection, and disease risk for the complement factor H (CFH) gene family.

Cantsilieris S, Nelson BJ, Huddleston J, Baker C, Harshman L, Penewit K, Munson KM, Sorensen M, Welch AE, Dang V, Grassmann F, Richardson AJ, Guymer RH, Graves-Lindsay TA, Wilson RK, Weber BHF, Baird PN, Allikmets R, Eichler EE.

Proc Natl Acad Sci U S A. 2018 May 8;115(19):E4433-E4442. doi: 10.1073/pnas.1717600115. Epub 2018 Apr 23.

10.

Dissecting the Causal Mechanism of X-Linked Dystonia-Parkinsonism by Integrating Genome and Transcriptome Assembly.

Aneichyk T, Hendriks WT, Yadav R, Shin D, Gao D, Vaine CA, Collins RL, Domingo A, Currall B, Stortchevoi A, Multhaupt-Buell T, Penney EB, Cruz L, Dhakal J, Brand H, Hanscom C, Antolik C, Dy M, Ragavendran A, Underwood J, Cantsilieris S, Munson KM, Eichler EE, Acuña P, Go C, Jamora RDG, Rosales RL, Church DM, Williams SR, Garcia S, Klein C, Müller U, Wilhelmsen KC, Timmers HTM, Sapir Y, Wainger BJ, Henderson D, Ito N, Weisenfeld N, Jaffe D, Sharma N, Breakefield XO, Ozelius LJ, Bragg DC, Talkowski ME.

Cell. 2018 Feb 22;172(5):897-909.e21. doi: 10.1016/j.cell.2018.02.011.

11.

Corrigendum: Discovery and genotyping of structural variation from long-read haploid genome sequence data.

Huddleston J, Chaisson MJP, Steinberg KM, Warren W, Hoekzema K, Gordon D, Graves-Lindsay TA, Munson KM, Kronenberg ZN, Vives L, Peluso P, Boitano M, Chin CS, Korlach J, Wilson RK, Eichler EE.

Genome Res. 2018 Jan;28(1):144. doi: 10.1101/gr.233007.117. No abstract available.

12.

Answer to November 2017 Photo Quiz.

Olson R, Munson KL, Napierala M, Munson E.

J Clin Microbiol. 2017 Nov;55(11):3311-3312. doi: 10.1128/JCM.03280-15. No abstract available.

13.

Photo Quiz: A 69-Year-Old Immunosuppressed Male with Chest Pain and Shortness of Breath.

Olson R, Munson KL, Napierala M, Munson E.

J Clin Microbiol. 2017 Nov;55(11):3151-3152. doi: 10.1128/JCM.03279-15. No abstract available.

14.

The cryo-EM structure of gastric H+,K+-ATPase with bound BYK99, a high-affinity member of K+-competitive, imidazo[1,2-a]pyridine inhibitors.

Abe K, Shimokawa J, Naito M, Munson K, Vagin O, Sachs G, Suzuki H, Tani K, Fujiyoshi Y.

Sci Rep. 2017 Jul 26;7(1):6632. doi: 10.1038/s41598-017-06698-8.

15.

Discovery and genotyping of structural variation from long-read haploid genome sequence data.

Huddleston J, Chaisson MJP, Steinberg KM, Warren W, Hoekzema K, Gordon D, Graves-Lindsay TA, Munson KM, Kronenberg ZN, Vives L, Peluso P, Boitano M, Chin CS, Korlach J, Wilson RK, Eichler EE.

Genome Res. 2017 May;27(5):677-685. doi: 10.1101/gr.214007.116. Epub 2016 Nov 28. Erratum in: Genome Res. 2018 Jan;28(1):144.

16.

Clinical laboratory assessments for Mycoplasma genitalium in a high-prevalence sexually-transmitted infection community reveal epidemiologic dichotomies with Trichomonas vaginalis.

Munson E, Munson KL, Schell RF.

Expert Rev Anti Infect Ther. 2017 Feb;15(2):133-145. doi: 10.1080/14787210.2017.1265887. Epub 2016 Dec 10. Review.

PMID:
27894204
17.

Interchromosomal core duplicons drive both evolutionary instability and disease susceptibility of the Chromosome 8p23.1 region.

Mohajeri K, Cantsilieris S, Huddleston J, Nelson BJ, Coe BP, Campbell CD, Baker C, Harshman L, Munson KM, Kronenberg ZN, Kremitzki M, Raja A, Catacchio CR, Graves TA, Wilson RK, Ventura M, Eichler EE.

Genome Res. 2016 Nov;26(11):1453-1467. Epub 2016 Oct 7.

18.

Expansion of Comprehensive Screening of Male Sexually Transmitted Infection Clinic Attendees with Mycoplasma genitalium and Trichomonas vaginalis Molecular Assessment: a Retrospective Analysis.

Munson E, Wenten D, Jhansale S, Schuknecht MK, Pantuso N, Gerritts J, Steward A, Munson KL, Napierala M, Hamer D.

J Clin Microbiol. 2016 Dec 28;55(1):321-325. doi: 10.1128/JCM.01625-16. Print 2017 Jan.

19.

Yes, my lady.

Munson K.

Midwives. 2016 Summer;19:31. No abstract available.

PMID:
27498473
20.

Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq).

Mahat DB, Kwak H, Booth GT, Jonkers IH, Danko CG, Patel RK, Waters CT, Munson K, Core LJ, Lis JT.

Nat Protoc. 2016 Aug;11(8):1455-76. doi: 10.1038/nprot.2016.086. Epub 2016 Jul 21.

21.

Long-read sequence assembly of the gorilla genome.

Gordon D, Huddleston J, Chaisson MJ, Hill CM, Kronenberg ZN, Munson KM, Malig M, Raja A, Fiddes I, Hillier LW, Dunn C, Baker C, Armstrong J, Diekhans M, Paten B, Shendure J, Wilson RK, Haussler D, Chin CS, Eichler EE.

Science. 2016 Apr 1;352(6281):aae0344. doi: 10.1126/science.aae0344.

22.

Application of Alternative Nucleic Acid Extraction Protocols to ProGastro SSCS Assay for Detection of Bacterial Enteric Pathogens.

Munson E, Napierala M, Munson KL, Bilbo D, Schulte MA.

J Clin Microbiol. 2016 May;54(5):1384-7. doi: 10.1128/JCM.00271-16. Epub 2016 Mar 2.

23.

Corrigendum. The binding selectivity of vonoprazan (TAK-438) to the gastric H+,K+-ATPase.

Scott DR, Munson KB, Marcus EA, Lambrecht NW, Sachs G.

Aliment Pharmacol Ther. 2016 Jan;43(2):315. doi: 10.1111/apt.13493. No abstract available.

24.

Suboptimal Trichomonas vaginalis Antigen Test Performance in a Low-Prevalence Sexually Transmitted Infection Community.

Munson KL, Napierala M, Munson E.

J Clin Microbiol. 2016 Feb;54(2):500-1. doi: 10.1128/JCM.02949-15. Epub 2015 Dec 9. No abstract available.

25.

Clinical Laboratory Assessment of Mycoplasma genitalium Transcription-Mediated Amplification Using Primary Female Urogenital Specimens.

Munson E, Bykowski H, Munson KL, Napierala M, Reiss PJ, Schell RF, Hryciuk JE.

J Clin Microbiol. 2016 Feb;54(2):432-8. doi: 10.1128/JCM.02463-15. Epub 2015 Dec 9.

26.

The binding selectivity of vonoprazan (TAK-438) to the gastric H+, K+ -ATPase.

Scott DR, Munson KB, Marcus EA, Lambrecht NW, Sachs G.

Aliment Pharmacol Ther. 2015 Dec;42(11-12):1315-26. doi: 10.1111/apt.13414. Epub 2015 Sep 30. Erratum in: Aliment Pharmacol Ther. 2016 Jan;43(2):315.

27.

Detection of Mycoplasma genitalium from male primary urine specimens: an epidemiologic dichotomy with Trichomonas vaginalis.

Napierala M, Munson E, Wenten D, Phipps P, Gremminger R, Schuknecht MK, Munson KL, Boyd V, Hamer D, Schell RF, Hryciuk JE.

Diagn Microbiol Infect Dis. 2015 Jul;82(3):194-8. doi: 10.1016/j.diagmicrobio.2015.03.016. Epub 2015 Mar 25.

PMID:
25934156
28.

Characterization of the bridged proton structure in HTFSI acid ionic liquid solutions.

Munson KT, Vergara J, Yu L, Vaden TD.

J Phys Chem B. 2015 May 21;119(20):6304-10. doi: 10.1021/acs.jpcb.5b02715. Epub 2015 May 7.

PMID:
25932889
29.

Frozen master mix-based modification of commercial reverse transcriptase PCR for detection of influenza and respiratory syncytial viruses.

Wenninger B, Munson E, Napierala M, Munson KL, Bilbo D, Hryciuk JE.

J Clin Microbiol. 2015 Apr;53(4):1452-3. doi: 10.1128/JCM.03457-14. Epub 2015 Jan 28. No abstract available.

30.

A global ocean inventory of anthropogenic mercury based on water column measurements.

Lamborg CH, Hammerschmidt CR, Bowman KL, Swarr GJ, Munson KM, Ohnemus DC, Lam PJ, Heimbürger LE, Rijkenberg MJ, Saito MA.

Nature. 2014 Aug 7;512(7512):65-8. doi: 10.1038/nature13563.

PMID:
25100482
31.

Gastric acid-dependent diseases: a twentieth-century revolution.

Sachs G, Shin JM, Munson K, Scott DR.

Dig Dis Sci. 2014 Jul;59(7):1358-69. doi: 10.1007/s10620-014-3104-8. No abstract available.

PMID:
24852882
32.

Comparison of commercial hybridization and automated transcription-mediated amplification modalities for detection of high-risk human papillomavirus nucleic acid.

Munson E, Kroeger L, Balzer S, Amrhein R, Munson KL, Napierala M, Hudspeth R, Dillon PJ.

J Clin Microbiol. 2014 Jan;52(1):331-4. doi: 10.1128/JCM.03066-13. Epub 2013 Nov 6.

33.

Mercury speciation and mobilization in a wastewater-contaminated groundwater plume.

Lamborg CH, Kent DB, Swarr GJ, Munson KM, Kading T, O'Connor AE, Fairchild GM, Leblanc DR, Wiatrowski HA.

Environ Sci Technol. 2013;47(23):13239-49. doi: 10.1021/es402441d. Epub 2013 Nov 20.

PMID:
24187956
34.

Structure of the proton-gated urea channel from the gastric pathogen Helicobacter pylori.

Strugatsky D, McNulty R, Munson K, Chen CK, Soltis SM, Sachs G, Luecke H.

Nature. 2013 Jan 10;493(7431):255-8. doi: 10.1038/nature11684. Epub 2012 Dec 9.

35.

Assessment of screening practices in a subacute clinical setting following introduction of Trichomonas vaginalis nucleic acid amplification testing.

Munson E, Miller C, Napierala M, Kramme T, Olson R, Munson KL, Olson S, Hryciuk JE, Schell RF.

WMJ. 2012 Oct;111(5):233-6.

36.

Screening of male patients for Trichomonas vaginalis with transcription-mediated amplification in a community with a high prevalence of sexually transmitted infection.

Munson KL, Napierala M, Munson E, Schell RF, Kramme T, Miller C, Hryciuk JE.

J Clin Microbiol. 2013 Jan;51(1):101-4. doi: 10.1128/JCM.02526-12. Epub 2012 Oct 24.

37.

Female epidemiology of transcription-mediated amplification-based Trichomonas vaginalis detection in a metropolitan setting with a high prevalence of sexually transmitted infection.

Munson E, Kramme T, Napierala M, Munson KL, Miller C, Hryciuk JE.

J Clin Microbiol. 2012 Dec;50(12):3927-31. doi: 10.1128/JCM.02078-12. Epub 2012 Sep 26.

38.

Three-year history of transcription-mediated amplification-based Trichomonas vaginalis analyte-specific reagent testing in a subacute care patient population.

Napierala M, Munson E, Munson KL, Kramme T, Miller C, Burtch J, Olson R, Hryciuk JE.

J Clin Microbiol. 2011 Dec;49(12):4190-4. doi: 10.1128/JCM.05632-11. Epub 2011 Oct 12.

39.

Gastric H+,K+-ATPase.

Shin JM, Munson K, Sachs G.

Compr Physiol. 2011 Oct;1(4):2141-53. doi: 10.1002/cphy.c110010. Review.

PMID:
23733700
40.

Characterization of a novel potassium-competitive acid blocker of the gastric H,K-ATPase, 1-[5-(2-fluorophenyl)-1-(pyridin-3-ylsulfonyl)-1H-pyrrol-3-yl]-N-methylmethanamine monofumarate (TAK-438).

Shin JM, Inatomi N, Munson K, Strugatsky D, Tokhtaeva E, Vagin O, Sachs G.

J Pharmacol Exp Ther. 2011 Nov;339(2):412-20. doi: 10.1124/jpet.111.185314. Epub 2011 Aug 9.

41.

Temporal characterization of carrot broth-enhanced real-time PCR as an alternative means for rapid detection of Streptococcus agalactiae from prenatal anorectal and vaginal screenings.

Munson E, Napierala M, Munson KL, Culver A, Hryciuk JE.

J Clin Microbiol. 2010 Dec;48(12):4495-500. doi: 10.1128/JCM.01734-10. Epub 2010 Oct 27.

42.

Inhibition of the gastric H,K-ATPase by clotrimazole.

Witzke A, Lindner K, Munson K, Apell HJ.

Biochemistry. 2010 Jun 1;49(21):4524-32. doi: 10.1021/bi1004014.

PMID:
20423050
43.

Zebrafish small molecule screen in reprogramming/cell fate modulation.

Yeh JR, Munson KM.

Methods Mol Biol. 2010;636:317-27. doi: 10.1007/978-1-60761-691-7_20.

44.

N-glycan-dependent quality control of the Na,K-ATPase beta(2) subunit.

Tokhtaeva E, Munson K, Sachs G, Vagin O.

Biochemistry. 2010 Apr 13;49(14):3116-28. doi: 10.1021/bi100115a.

45.

Transduction of nonhuman primate brain with adeno-associated virus serotype 1: vector trafficking and immune response.

Hadaczek P, Forsayeth J, Mirek H, Munson K, Bringas J, Pivirotto P, McBride JL, Davidson BL, Bankiewicz KS.

Hum Gene Ther. 2009 Mar;20(3):225-37. doi: 10.1089/hum.2008.151.

46.

Discovering chemical modifiers of oncogene-regulated hematopoietic differentiation.

Yeh JR, Munson KM, Elagib KE, Goldfarb AN, Sweetser DA, Peterson RT.

Nat Chem Biol. 2009 Apr;5(4):236-43. doi: 10.1038/nchembio.147. Epub 2009 Jan 26.

47.

Performance of a single assay for both type III and type VI TMPRSS2:ERG fusions in noninvasive prediction of prostate biopsy outcome.

Clark JP, Munson KW, Gu JW, Lamparska-Kupsik K, Chan KG, Yoshida JS, Kawachi MH, Crocitto LE, Wilson TG, Feng Z, Smith SS.

Clin Chem. 2008 Dec;54(12):2007-17. doi: 10.1373/clinchem.2008.108845. Epub 2008 Oct 23.

48.

An ion gating mechanism of gastric H,K-ATPase based on molecular dynamics simulations.

Law RJ, Munson K, Sachs G, Lightstone FC.

Biophys J. 2008 Sep 15;95(6):2739-49. doi: 10.1529/biophysj.107.128025. Epub 2008 Jun 20.

49.

The gastric HK-ATPase: structure, function, and inhibition.

Shin JM, Munson K, Vagin O, Sachs G.

Pflugers Arch. 2009 Jan;457(3):609-22. doi: 10.1007/s00424-008-0495-4. Epub 2008 Jun 6. Review. Erratum in: Pflugers Arch. 2011 Mar;461(3):399.

50.

AML1-ETO reprograms hematopoietic cell fate by downregulating scl expression.

Yeh JR, Munson KM, Chao YL, Peterson QP, Macrae CA, Peterson RT.

Development. 2008 Jan;135(2):401-10.

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