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Items: 43

1.

Correction for Johnson et al., "Complete Genome Sequences for 35 Biothreat Assay-Relevant Bacillus Species".

Johnson SL, Daligault HE, Davenport KW, Jaissle J, Frey KG, Ladner JT, Broomall SM, Bishop-Lilly KA, Bruce DC, Gibbons HS, Coyne SR, Lo CC, Meincke L, Munk AC, Koroleva GI, Rosenzweig CN, Palacios GF, Redden CL, Minogue TD, Chain PS.

Genome Announc. 2018 Jan 18;6(3). pii: e01144-17. doi: 10.1128/genomeA.01144-17. No abstract available.

2.

Complete Genome Assemblies for Two Single-Chromosome Vibrio cholerae Isolates, Strains 1154-74 (Serogroup O49) and 10432-62 (Serogroup O27).

Johnson SL, Khiani A, Bishop-Lilly KA, Chapman C, Patel M, Verratti K, Teshima H, Munk AC, Bruce DC, Han CS, Xie G, Davenport KW, Chain P, Sozhamannan S.

Genome Announc. 2015 May 14;3(3). pii: e00462-15. doi: 10.1128/genomeA.00462-15.

3.

Deep-sea hydrothermal vent bacteria related to human pathogenic Vibrio species.

Hasan NA, Grim CJ, Lipp EK, Rivera IN, Chun J, Haley BJ, Taviani E, Choi SY, Hoq M, Munk AC, Brettin TS, Bruce D, Challacombe JF, Detter JC, Han CS, Eisen JA, Huq A, Colwell RR.

Proc Natl Acad Sci U S A. 2015 May 26;112(21):E2813-9. doi: 10.1073/pnas.1503928112. Epub 2015 May 11.

4.

Complete genome sequences for 35 biothreat assay-relevant bacillus species.

Johnson SL, Daligault HE, Davenport KW, Jaissle J, Frey KG, Ladner JT, Broomall SM, Bishop-Lilly KA, Bruce DC, Gibbons HS, Coyne SR, Lo CC, Meincke L, Munk AC, Koroleva GI, Rosenzweig CN, Palacios GF, Redden CL, Minogue TD, Chain PS.

Genome Announc. 2015 Apr 30;3(2). pii: e00151-15. doi: 10.1128/genomeA.00151-15. Erratum in: Genome Announc. 2018 Jan 18;6(3):.

5.

Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica.

Johnson SL, Daligault HE, Davenport KW, Jaissle J, Frey KG, Ladner JT, Broomall SM, Bishop-Lilly KA, Bruce DC, Coyne SR, Gibbons HS, Lo CC, Munk AC, Rosenzweig CN, Koroleva GI, Palacios GF, Redden CL, Xu Y, Minogue TD, Chain PS.

Genome Announc. 2015 Apr 30;3(2). pii: e00148-15. doi: 10.1128/genomeA.00148-15.

6.

[Uterine rupture without preexisting caesarean section after perforation of the uterus during evacuation].

Bønnelykke A, Jeppesen U, Munk AC.

Ugeskr Laeger. 2015 Jan 26;177(2A):66-7. Danish.

PMID:
25612972
7.

Genome Assembly of Shigella flexneri ATCC 12022, a Quality Control Reference Strain.

Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Coyne SR, Freitas T, Frey KG, Gibbons HS, Jaissle J, Lo CC, Meincke L, Munk AC, Redden CL, Rosenzweig CN, Johnson SL.

Genome Announc. 2014 Oct 30;2(5). pii: e01052-14. doi: 10.1128/genomeA.01052-14.

8.

Complete Genome Assembly of Corynebacterium sp. Strain ATCC 6931.

Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Li PE, Meincke L, Munk AC, Palacios GF, Redden CL, Johnson SL.

Genome Announc. 2014 Oct 23;2(5). pii: e01074-14. doi: 10.1128/genomeA.01074-14.

9.

Draft Genome Assembly of Klebsiella pneumoniae Type Strain ATCC 13883.

Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Meincke L, Munk AC, Palacios GF, Redden CL, Johnson SL.

Genome Announc. 2014 Sep 25;2(5). pii: e00939-14. doi: 10.1128/genomeA.00939-14.

10.

Genome Assembly of Methicillin-Resistant Quality Control Strain Staphylococcus aureus CDC73-57501 (ATCC 29247).

Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Coyne SR, Freitas T, Frey KG, Gibbons HS, Jaissle J, Lo CC, Meincke L, Munk AC, Redden CL, Rosenzweig CN, Johnson SL.

Genome Announc. 2014 Oct 2;2(5). pii: e00961-14. doi: 10.1128/genomeA.00961-14.

11.

Draft Genome Assembly of Ralstonia pickettii Type Strain K-288 (ATCC 27853).

Daligault HE, Davenport KW, Minogue TD, Broomall SM, Bruce DC, Chain PS, Coyne SR, Gibbons HS, Jaissle J, Lo CC, Meincke L, Munk AC, Rosenzweig CN, Johnson SL.

Genome Announc. 2014 Sep 25;2(5). pii: e00973-14. doi: 10.1128/genomeA.00973-14.

12.

Prediction of spontaneous regression of cervical intraepithelial neoplasia lesions grades 2 and 3 by proteomic analysis.

Uleberg KE, Ovestad IT, Munk AC, Brede C, van Diermen B, Gudlaugsson E, Janssen EA, Hjelle A, Baak JP.

Int J Proteomics. 2014;2014:129064. doi: 10.1155/2014/129064. Epub 2014 Jun 15.

13.

Consistent condom use increases spontaneous regression in high-risk non-HPV16 but not in HPV16 CIN2-3 lesions, a prospective population-based cohort study.

Munk AC, Ovestad IT, Gudlaugsson E, Løvslett K, Fiane B, van Diermen-Hidle B, Kruse AJ, Skaland I, Janssen EA, Baak JP.

Infect Agent Cancer. 2012 Nov 5;7(1):30. doi: 10.1186/1750-9378-7-30.

14.

Consistent condom use increases the regression rate of cervical intraepithelial neoplasia 2-3.

Munk AC, Gudlaugsson E, Malpica A, Fiane B, Løvslett KI, Kruse AJ, Øvestad IT, Voorhorst F, Janssen EA, Baak JP.

PLoS One. 2012;7(9):e45114. doi: 10.1371/journal.pone.0045114. Epub 2012 Sep 13.

15.

Interaction of epithelial biomarkers, local immune response and condom use in cervical intraepithelial neoplasia 2-3 regression.

Munk AC, Gudlaugsson E, Ovestad IT, Lovslett K, Fiane B, Hidle Bv, Kruse AJ, Skaland I, Janssen EA, Baak JP.

Gynecol Oncol. 2012 Dec;127(3):489-94. doi: 10.1016/j.ygyno.2012.09.010. Epub 2012 Sep 24.

PMID:
23017821
16.

Improving genome assemblies by sequencing PCR products with PacBio.

Zhang X, Davenport KW, Gu W, Daligault HE, Munk AC, Tashima H, Reitenga K, Green LD, Han CS.

Biotechniques. 2012 Jul;53(1):61-2. doi: 10.2144/0000113891.

17.

Complete genome sequence of Allochromatium vinosum DSM 180(T).

Weissgerber T, Zigann R, Bruce D, Chang YJ, Detter JC, Han C, Hauser L, Jeffries CD, Land M, Munk AC, Tapia R, Dahl C.

Stand Genomic Sci. 2011 Dec 31;5(3):311-30. doi: 10.4056/sigs.2335270. Epub 2011 Dec 22.

18.

Temperature regulation of virulence factors in the pathogen Vibrio coralliilyticus.

Kimes NE, Grim CJ, Johnson WR, Hasan NA, Tall BD, Kothary MH, Kiss H, Munk AC, Tapia R, Green L, Detter C, Bruce DC, Brettin TS, Colwell RR, Morris PJ.

ISME J. 2012 Apr;6(4):835-46. doi: 10.1038/ismej.2011.154. Epub 2011 Dec 8.

19.

Complete genome sequence of Tsukamurella paurometabola type strain (no. 33).

Munk AC, Lapidus A, Lucas S, Nolan M, Tice H, Cheng JF, Del Rio TG, Goodwin L, Pitluck S, Liolios K, Huntemann M, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Tapia R, Han C, Land M, Hauser L, Chang YJ, Jeffries CD, Brettin T, Yasawong M, Brambilla EM, Rohde M, Sikorski J, Göker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP.

Stand Genomic Sci. 2011 Jul 1;4(3):342-51. doi: 10.4056/sigs.1894556. Epub 2011 Jun 30.

20.

Complete genome sequence of Rhodospirillum rubrum type strain (S1).

Munk AC, Copeland A, Lucas S, Lapidus A, Del Rio TG, Barry K, Detter JC, Hammon N, Israni S, Pitluck S, Brettin T, Bruce D, Han C, Tapia R, Gilna P, Schmutz J, Larimer F, Land M, Kyrpides NC, Mavromatis K, Richardson P, Rohde M, Göker M, Klenk HP, Zhang Y, Roberts GP, Reslewic S, Schwartz DC.

Stand Genomic Sci. 2011 Jul 1;4(3):293-302. doi: 10.4056/sigs.1804360. Epub 2011 Jun 30.

21.

Comparison of different commercial methods for HPV detection in follow-up cytology after ASCUS/LSIL, prediction of CIN2-3 in follow up biopsies and spontaneous regression of CIN2-3.

Ovestad IT, Vennestrøm U, Andersen L, Gudlaugsson E, Munk AC, Malpica A, Feng W, Voorhorst F, Janssen EA, Baak JP.

Gynecol Oncol. 2011 Nov;123(2):278-83. doi: 10.1016/j.ygyno.2011.07.024. Epub 2011 Aug 10.

PMID:
21835440
22.

Discrimination of grade 2 and 3 cervical intraepithelial neoplasia by means of analysis of water soluble proteins recovered from cervical biopsies.

Uleberg KE, Munk AC, Brede C, Gudlaugsson E, van Diermen B, Skaland I, Malpica A, Janssen EA, Hjelle A, Baak JP.

Proteome Sci. 2011 Jun 28;9:36. doi: 10.1186/1477-5956-9-36.

23.

A protein profile study to discriminate CIN lesions from normal cervical epithelium.

Uleberg KE, Munk AC, Skaland I, Furlan C, van Diermen B, Gudlaugsson E, Janssen EA, Malpica A, Feng W, Hjelle A, Baak JP.

Cell Oncol (Dordr). 2011 Oct;34(5):443-50. doi: 10.1007/s13402-011-0047-3. Epub 2011 May 15.

24.

Genome sequence of Streptomyces griseus strain XylebKG-1, an ambrosia beetle-associated actinomycete.

Grubbs KJ, Biedermann PH, Suen G, Adams SM, Moeller JA, Klassen JL, Goodwin LA, Woyke T, Munk AC, Bruce D, Detter C, Tapia R, Han CS, Currie CR.

J Bacteriol. 2011 Jun;193(11):2890-1. doi: 10.1128/JB.00330-11. Epub 2011 Apr 1.

25.

The impact of epithelial biomarkers, local immune response and human papillomavirus genotype in the regression of cervical intraepithelial neoplasia grades 2-3.

Ovestad IT, Gudlaugsson E, Skaland I, Malpica A, Munk AC, Janssen EA, Baak JP.

J Clin Pathol. 2011 Apr;64(4):303-7. doi: 10.1136/jcp.2010.083626.

PMID:
21421698
26.

Comparative genomics of clinical and environmental Vibrio mimicus.

Hasan NA, Grim CJ, Haley BJ, Chun J, Alam M, Taviani E, Hoq M, Munk AC, Saunders E, Brettin TS, Bruce DC, Challacombe JF, Detter JC, Han CS, Xie G, Nair GB, Huq A, Colwell RR.

Proc Natl Acad Sci U S A. 2010 Dec 7;107(49):21134-9. doi: 10.1073/pnas.1013825107. Epub 2010 Nov 15.

27.

The genomic basis of trophic strategy in marine bacteria.

Lauro FM, McDougald D, Thomas T, Williams TJ, Egan S, Rice S, DeMaere MZ, Ting L, Ertan H, Johnson J, Ferriera S, Lapidus A, Anderson I, Kyrpides N, Munk AC, Detter C, Han CS, Brown MV, Robb FT, Kjelleberg S, Cavicchioli R.

Proc Natl Acad Sci U S A. 2009 Sep 15;106(37):15527-33. doi: 10.1073/pnas.0903507106. Epub 2009 Sep 8.

28.

Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, E and F and Clostridium butyricum type E strains.

Hill KK, Xie G, Foley BT, Smith TJ, Munk AC, Bruce D, Smith LA, Brettin TS, Detter JC.

BMC Biol. 2009 Oct 5;7:66. doi: 10.1186/1741-7007-7-66.

29.

Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae.

Chun J, Grim CJ, Hasan NA, Lee JH, Choi SY, Haley BJ, Taviani E, Jeon YS, Kim DW, Lee JH, Brettin TS, Bruce DC, Challacombe JF, Detter JC, Han CS, Munk AC, Chertkov O, Meincke L, Saunders E, Walters RA, Huq A, Nair GB, Colwell RR.

Proc Natl Acad Sci U S A. 2009 Sep 8;106(36):15442-7. doi: 10.1073/pnas.0907787106. Epub 2009 Aug 31.

30.

The genome of Polaromonas sp. strain JS666: insights into the evolution of a hydrocarbon- and xenobiotic-degrading bacterium, and features of relevance to biotechnology.

Mattes TE, Alexander AK, Richardson PM, Munk AC, Han CS, Stothard P, Coleman NV.

Appl Environ Microbiol. 2008 Oct;74(20):6405-16. doi: 10.1128/AEM.00197-08. Epub 2008 Aug 22.

31.

Low p53 and retinoblastoma protein expression in cervical intraepithelial neoplasia grade 3 lesions is associated with coexistent adenocarcinoma in situ.

Kruse AJ, Skaland I, Munk AC, Janssen E, Gudlaugsson E, Baak JP.

Hum Pathol. 2008 Apr;39(4):573-8. doi: 10.1016/j.humpath.2007.08.014. Epub 2008 Jan 30.

PMID:
18234283
32.

Cervical intraepithelial neoplasia grade 3 lesions can regress.

Munk AC, Kruse AJ, van Diermen B, Janssen EA, Skaland I, Gudlaugsson E, Nilsen ST, Baak JP.

APMIS. 2007 Dec;115(12):1409-14. doi: 10.1111/j.1600-0463.2007.00769.x.

PMID:
18184413
33.

Analysis of the neurotoxin complex genes in Clostridium botulinum A1-A4 and B1 strains: BoNT/A3, /Ba4 and /B1 clusters are located within plasmids.

Smith TJ, Hill KK, Foley BT, Detter JC, Munk AC, Bruce DC, Doggett NA, Smith LA, Marks JD, Xie G, Brettin TS.

PLoS One. 2007 Dec 5;2(12):e1271.

34.

A horizontal gene transfer event defines two distinct groups within Burkholderia pseudomallei that have dissimilar geographic distributions.

Tuanyok A, Auerbach RK, Brettin TS, Bruce DC, Munk AC, Detter JC, Pearson T, Hornstra H, Sermswan RW, Wuthiekanun V, Peacock SJ, Currie BJ, Keim P, Wagner DM.

J Bacteriol. 2007 Dec;189(24):9044-9. Epub 2007 Oct 12.

35.

The complete genome sequence of Bacillus thuringiensis Al Hakam.

Challacombe JF, Altherr MR, Xie G, Bhotika SS, Brown N, Bruce D, Campbell CS, Campbell ML, Chen J, Chertkov O, Cleland C, Dimitrijevic M, Doggett NA, Fawcett JJ, Glavina T, Goodwin LA, Green LD, Han CS, Hill KK, Hitchcock P, Jackson PJ, Keim P, Kewalramani AR, Longmire J, Lucas S, Malfatti S, Martinez D, McMurry K, Meincke LJ, Misra M, Moseman BL, Mundt M, Munk AC, Okinaka RT, Parson-Quintana B, Reilly LP, Richardson P, Robinson DL, Saunders E, Tapia R, Tesmer JG, Thayer N, Thompson LS, Tice H, Ticknor LO, Wills PL, Gilna P, Brettin TS.

J Bacteriol. 2007 May;189(9):3680-1. Epub 2007 Mar 2.

36.

Pathogenomic sequence analysis of Bacillus cereus and Bacillus thuringiensis isolates closely related to Bacillus anthracis.

Han CS, Xie G, Challacombe JF, Altherr MR, Bhotika SS, Brown N, Bruce D, Campbell CS, Campbell ML, Chen J, Chertkov O, Cleland C, Dimitrijevic M, Doggett NA, Fawcett JJ, Glavina T, Goodwin LA, Green LD, Hill KK, Hitchcock P, Jackson PJ, Keim P, Kewalramani AR, Longmire J, Lucas S, Malfatti S, McMurry K, Meincke LJ, Misra M, Moseman BL, Mundt M, Munk AC, Okinaka RT, Parson-Quintana B, Reilly LP, Richardson P, Robinson DL, Rubin E, Saunders E, Tapia R, Tesmer JG, Thayer N, Thompson LS, Tice H, Ticknor LO, Wills PL, Brettin TS, Gilna P.

J Bacteriol. 2006 May;188(9):3382-90. Erratum in: J Bacteriol. 2006 Nov;188(21):7711. Brown, Nancy [added]; Green, Lance D [added].

37.

Closing bacterial genomic sequence gaps with adaptor-PCR.

Rogers YC, Munk AC, Meincke LJ, Han CS.

Biotechniques. 2005 Jul;39(1):31-2, 34. No abstract available.

38.

The sequence and analysis of duplication-rich human chromosome 16.

Martin J, Han C, Gordon LA, Terry A, Prabhakar S, She X, Xie G, Hellsten U, Chan YM, Altherr M, Couronne O, Aerts A, Bajorek E, Black S, Blumer H, Branscomb E, Brown NC, Bruno WJ, Buckingham JM, Callen DF, Campbell CS, Campbell ML, Campbell EW, Caoile C, Challacombe JF, Chasteen LA, Chertkov O, Chi HC, Christensen M, Clark LM, Cohn JD, Denys M, Detter JC, Dickson M, Dimitrijevic-Bussod M, Escobar J, Fawcett JJ, Flowers D, Fotopulos D, Glavina T, Gomez M, Gonzales E, Goodstein D, Goodwin LA, Grady DL, Grigoriev I, Groza M, Hammon N, Hawkins T, Haydu L, Hildebrand CE, Huang W, Israni S, Jett J, Jewett PB, Kadner K, Kimball H, Kobayashi A, Krawczyk MC, Leyba T, Longmire JL, Lopez F, Lou Y, Lowry S, Ludeman T, Manohar CF, Mark GA, McMurray KL, Meincke LJ, Morgan J, Moyzis RK, Mundt MO, Munk AC, Nandkeshwar RD, Pitluck S, Pollard M, Predki P, Parson-Quintana B, Ramirez L, Rash S, Retterer J, Ricke DO, Robinson DL, Rodriguez A, Salamov A, Saunders EH, Scott D, Shough T, Stallings RL, Stalvey M, Sutherland RD, Tapia R, Tesmer JG, Thayer N, Thompson LS, Tice H, Torney DC, Tran-Gyamfi M, Tsai M, Ulanovsky LE, Ustaszewska A, Vo N, White PS, Williams AL, Wills PL, Wu JR, Wu K, Yang J, Dejong P, Bruce D, Doggett NA, Deaven L, Schmutz J, Grimwood J, Richardson P, Rokhsar DS, Eichler EE, Gilna P, Lucas SM, Myers RM, Rubin EM, Pennacchio LA.

Nature. 2004 Dec 23;432(7020):988-94.

PMID:
15616553
39.

[Long term effects o gastric banding for weight reduction].

Valen B, Munk AC.

Tidsskr Nor Laegeforen. 2000 Jun 30;120(17):1995-6. Norwegian.

40.

Genomic structure and complete nucleotide sequence of the Batten disease gene, CLN3.

Mitchison HM, Munroe PB, O'Rawe AM, Taschner PE, de Vos N, Kremmidiotis G, Lensink I, Munk AC, D'Arigo KL, Anderson JW, Lerner TJ, Moyzis RK, Callen DF, Breuning MH, Doggett NA, Gardiner RM, Mole SE.

Genomics. 1997 Mar 1;40(2):346-50.

PMID:
9119403
41.

Coordinate amplification of metallothionein I and II genes in cadmium-resistant Chinese hamster cells: implications for mechanisms regulating metallothionein gene expression.

Crawford BD, Enger MD, Griffith BB, Griffith JK, Hanners JL, Longmire JL, Munk AC, Stallings RL, Tesmer JG, Walters RA, et al.

Mol Cell Biol. 1985 Feb;5(2):320-9.

42.

Oncogenes and linkage groups: conservation during mammalian chromosome evolution.

Stallings RL, Munk AC, Longmire JL, Jett JH, Wilder ME, Siciliano MJ, Adair GM, Crawford BD.

Chromosoma. 1985;92(2):156-63.

PMID:
4006599
43.

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