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Microbiol Resour Announc. 2019 Jan 10;8(2). pii: e01607-18. doi: 10.1128/MRA.01607-18. eCollection 2019 Jan.

Transcriptome Sequencing Reveals a Complete Genome Sequence of Cowpea Aphid-Borne Mosaic Virus from Passion Fruit in Kenya.

Author information

1
Kenya Plant Health Inspectorate Service, Nairobi, Kenya.
2
Biosciences eastern and central Africa-International Livestock Research Institute, Nairobi, Kenya.
3
Horsham Centre, Agriculture Victoria, Horsham, Victoria, Australia.
4
Department of Biochemistry, University of Nairobi, Nairobi, Kenya.
5
Department of Plant Science and Crop Protection, University of Nairobi, Nairobi, Kenya.

Abstract

Analysis of transcriptome sequencing (RNA-Seq) data revealed a complete Cowpea aphid-borne mosaic virus (CABMV) genome from virus-infected passion fruit in Kenya. We compared it with six complete CABMV genomes, one each from Zimbabwe and Uganda and two each from Brazil and India. The Zimbabwean isolate CABMV-Z was the closest, with 83.0% nucleotide identity.

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