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Items: 1 to 50 of 74

1.

Characterization of Conformational Ensembles of Protonated N-glycans in the Gas-Phase.

Re S, Watabe S, Nishima W, Muneyuki E, Yamaguchi Y, MacKerell AD Jr, Sugita Y.

Sci Rep. 2018 Jan 26;8(1):1644. doi: 10.1038/s41598-018-20012-0.

2.

Simultaneous Formation and Spatial Patterning of ZnO on ITO Surfaces by Local Laser-Induced Generation of Microbubbles in Aqueous Solutions of [Zn(NH3)4]2.

Fujii S, Fukano R, Hayami Y, Ozawa H, Muneyuki E, Kitamura N, Haga MA.

ACS Appl Mater Interfaces. 2017 Mar 8;9(9):8413-8419. doi: 10.1021/acsami.6b16719. Epub 2017 Feb 27.

PMID:
28217991
3.

Crystal structures of the ATP-binding and ADP-release dwells of the V1 rotary motor.

Suzuki K, Mizutani K, Maruyama S, Shimono K, Imai FL, Muneyuki E, Kakinuma Y, Ishizuka-Katsura Y, Shirouzu M, Yokoyama S, Yamato I, Murata T.

Nat Commun. 2016 Oct 27;7:13235. doi: 10.1038/ncomms13235.

4.

Formation of M-Like Intermediates in Proteorhodopsin in Alkali Solutions (pH ≥ ∼8.5) Where the Proton Release Occurs First in Contrast to the Sequence at Lower pH.

Tamogami J, Sato K, Kurokawa S, Yamada T, Nara T, Demura M, Miyauchi S, Kikukawa T, Muneyuki E, Kamo N.

Biochemistry. 2016 Feb 23;55(7):1036-48. doi: 10.1021/acs.biochem.5b01196. Epub 2016 Feb 8.

PMID:
26812529
5.

Torque generation of Enterococcus hirae V-ATPase.

Ueno H, Minagawa Y, Hara M, Rahman S, Yamato I, Muneyuki E, Noji H, Murata T, Iino R.

J Biol Chem. 2014 Nov 7;289(45):31212-23. doi: 10.1074/jbc.M114.598177. Epub 2014 Sep 25.

6.

CHARMM Force-Fields with Modified Polyphosphate Parameters Allow Stable Simulation of the ATP-Bound Structure of Ca(2+)-ATPase.

Komuro Y, Re S, Kobayashi C, Muneyuki E, Sugita Y.

J Chem Theory Comput. 2014 Sep 9;10(9):4133-42. doi: 10.1021/ct5004143.

PMID:
26588553
7.

Thermodynamic analyses of nucleotide binding to an isolated monomeric β subunit and the α3β3γ subcomplex of F1-ATPase.

Kikuchi Y, Naka Y, Osakabe H, Okamoto T, Masaike T, Ueno H, Toyabe S, Muneyuki E.

Biophys J. 2013 Dec 3;105(11):2541-8. doi: 10.1016/j.bpj.2013.10.018.

8.

Basic properties of rotary dynamics of the molecular motor Enterococcus hirae V1-ATPase.

Minagawa Y, Ueno H, Hara M, Ishizuka-Katsura Y, Ohsawa N, Terada T, Shirouzu M, Yokoyama S, Yamato I, Muneyuki E, Noji H, Murata T, Iino R.

J Biol Chem. 2013 Nov 8;288(45):32700-7. doi: 10.1074/jbc.M113.506329. Epub 2013 Oct 2.

9.

Energetics of the presequence-binding poses in mitochondrial protein import through Tom20.

Komuro Y, Miyashita N, Mori T, Muneyuki E, Saitoh T, Kohda D, Sugita Y.

J Phys Chem B. 2013 Mar 14;117(10):2864-71. doi: 10.1021/jp400113e. Epub 2013 Mar 5.

PMID:
23432372
10.

Information-to-free-energy conversion: Utilizing thermal fluctuations.

Toyabe S, Muneyuki E.

Biophysics (Nagoya-shi). 2013 Aug 7;9:107-12. doi: 10.2142/biophysics.9.107. eCollection 2013. Review.

11.

Experimental thermodynamics of single molecular motor.

Toyabe S, Muneyuki E.

Biophysics (Nagoya-shi). 2013 Jul 12;9:91-8. doi: 10.2142/biophysics.9.91. eCollection 2013. Review.

12.

Properties of the electrogenic activity of bacteriorhodopsin.

Miyazaki S, Matsumoto M, Brier SB, Higaki T, Yamada T, Okamoto T, Ueno H, Toyabe S, Muneyuki E.

Eur Biophys J. 2013 Apr;42(4):257-65. doi: 10.1007/s00249-012-0870-0. Epub 2012 Oct 28.

PMID:
23104625
13.

Thermodynamic efficiency and mechanochemical coupling of F1-ATPase.

Toyabe S, Watanabe-Nakayama T, Okamoto T, Kudo S, Muneyuki E.

Proc Natl Acad Sci U S A. 2011 Nov 1;108(44):17951-6. doi: 10.1073/pnas.1106787108. Epub 2011 Oct 13.

14.

Fabrication and placement of a ring structure of nanoparticles by a laser-induced micronanobubble on a gold surface.

Fujii S, Kanaizuka K, Toyabe S, Kobayashi K, Muneyuki E, Haga MA.

Langmuir. 2011 Jul 19;27(14):8605-10. doi: 10.1021/la201616s. Epub 2011 Jun 21.

PMID:
21678969
15.

Direct observation of the myosin Va recovery stroke that contributes to unidirectional stepping along actin.

Shiroguchi K, Chin HF, Hannemann DE, Muneyuki E, De La Cruz EM, Kinosita K Jr.

PLoS Biol. 2011 Apr;9(4):e1001031. doi: 10.1371/journal.pbio.1001031. Epub 2011 Apr 12.

16.

Nonequilibrium energetics of a single F1-ATPase molecule.

Toyabe S, Okamoto T, Watanabe-Nakayama T, Taketani H, Kudo S, Muneyuki E.

Phys Rev Lett. 2010 May 14;104(19):198103. Epub 2010 May 14.

PMID:
20867002
17.

Observation of DNA pinning at laser focal point on Au surface and its application to single DNA nanowire and cross-wire formation.

Fujii S, Kobayashi K, Kanaizuka K, Okamoto T, Toyabe S, Muneyuki E, Haga MA.

Bioelectrochemistry. 2010 Nov;80(1):26-30. doi: 10.1016/j.bioelechem.2010.04.004. Epub 2010 May 11.

PMID:
20537962
18.

Chemo-mechanical coupling in F(1)-ATPase revealed by catalytic site occupancy during catalysis.

Shimo-Kon R, Muneyuki E, Sakai H, Adachi K, Yoshida M, Kinosita K Jr.

Biophys J. 2010 Apr 7;98(7):1227-36. doi: 10.1016/j.bpj.2009.11.050.

19.

Allosteric model of an ion pump.

Muneyuki E, Sekimoto K.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Jan;81(1 Pt 1):011137. Epub 2010 Jan 28.

PMID:
20365353
20.

Modulation of nucleotide binding to the catalytic sites of thermophilic F(1)-ATPase by the epsilon subunit: implication for the role of the epsilon subunit in ATP synthesis.

Yasuno T, Muneyuki E, Yoshida M, Kato-Yamada Y.

Biochem Biophys Res Commun. 2009 Dec 11;390(2):230-4. doi: 10.1016/j.bbrc.2009.09.092. Epub 2009 Sep 26.

PMID:
19785990
21.

A tin oxide transparent electrode provides the means for rapid time-resolved pH measurements: application to photoinduced proton transfer of bacteriorhodopsin and proteorhodopsin.

Tamogami J, Kikukawa T, Miyauchi S, Muneyuki E, Kamo N.

Photochem Photobiol. 2009 Mar-Apr;85(2):578-89. doi: 10.1111/j.1751-1097.2008.00520.x. Epub 2009 Jan 19.

PMID:
19192196
22.

Temperature dependence of the rotation and hydrolysis activities of F1-ATPase.

Furuike S, Adachi K, Sakaki N, Shimo-Kon R, Itoh H, Muneyuki E, Yoshida M, Kinosita K Jr.

Biophys J. 2008 Jul;95(2):761-70. doi: 10.1529/biophysj.107.123307. Epub 2008 Mar 28.

23.

Effect of external torque on the ATP-driven rotation of F1-ATPase.

Watanabe-Nakayama T, Toyabe S, Kudo S, Sugiyama S, Yoshida M, Muneyuki E.

Biochem Biophys Res Commun. 2008 Feb 22;366(4):951-7. Epub 2007 Dec 18.

PMID:
18083117
24.

F1-ATPase rotates by an asymmetric, sequential mechanism using all three catalytic subunits.

Ariga T, Muneyuki E, Yoshida M.

Nat Struct Mol Biol. 2007 Sep;14(9):841-6. Epub 2007 Aug 26. Erratum in: Nat Struct Mol Biol. 2007 Oct;14(10):984.

PMID:
17721548
25.

Single molecule energetics of F1-ATPase motor.

Muneyuki E, Watanabe-Nakayama T, Suzuki T, Yoshida M, Nishizaka T, Noji H.

Biophys J. 2007 Mar 1;92(5):1806-12. Epub 2006 Dec 8.

26.

AFM and TEM observations of alpha-helix to beta-sheet conformational change occurring on carbon nanotubes.

Sugiyama Y, Inoue Y, Muneyuki E, Haneda H, Fujimoto M.

J Electron Microsc (Tokyo). 2006 Jun;55(3):143-9. Epub 2006 Aug 17.

PMID:
16916880
27.

Kinetic mechanism of quinol oxidation by cytochrome bd studied with ubiquinone-2 analogs.

Matsumoto Y, Muneyuki E, Fujita D, Sakamoto K, Miyoshi H, Yoshida M, Mogi T.

J Biochem. 2006 Apr;139(4):779-88.

PMID:
16672279
28.
30.

One rotary mechanism for F1-ATPase over ATP concentrations from millimolar down to nanomolar.

Sakaki N, Shimo-Kon R, Adachi K, Itoh H, Furuike S, Muneyuki E, Yoshida M, Kinosita K Jr.

Biophys J. 2005 Mar;88(3):2047-56. Epub 2004 Dec 30.

31.

Chemomechanical coupling in F1-ATPase revealed by simultaneous observation of nucleotide kinetics and rotation.

Nishizaka T, Oiwa K, Noji H, Kimura S, Muneyuki E, Yoshida M, Kinosita K Jr.

Nat Struct Mol Biol. 2004 Feb;11(2):142-8. Epub 2004 Jan 18.

PMID:
14730353
32.

Catalysis and rotation of F1 motor: cleavage of ATP at the catalytic site occurs in 1 ms before 40 degree substep rotation.

Shimabukuro K, Yasuda R, Muneyuki E, Hara KY, Kinosita K Jr, Yoshida M.

Proc Natl Acad Sci U S A. 2003 Dec 9;100(25):14731-6. Epub 2003 Dec 1.

33.

Origin of apparent negative cooperativity of F(1)-ATPase.

Ono S, Hara KY, Hirao J, Matsui T, Noji H, Yoshida M, Muneyuki E.

Biochim Biophys Acta. 2003 Oct 17;1607(1):35-44.

34.

Evidence for rotation of V1-ATPase.

Imamura H, Nakano M, Noji H, Muneyuki E, Ohkuma S, Yoshida M, Yokoyama K.

Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2312-5. Epub 2003 Feb 21.

35.

Cl(-) concentration dependence of photovoltage generation by halorhodopsin from Halobacterium salinarum.

Muneyuki E, Shibazaki C, Wada Y, Yakushizin M, Ohtani H.

Biophys J. 2002 Oct;83(4):1749-59.

36.

F1-ATPase changes its conformations upon phosphate release.

Masaike T, Muneyuki E, Noji H, Kinosita K Jr, Yoshida M.

J Biol Chem. 2002 Jun 14;277(24):21643-9. Epub 2002 Mar 5.

37.

The presence of phosphate at a catalytic site suppresses the formation of the MgADP-inhibited form of F(1)-ATPase.

Mitome N, Ono S, Suzuki T, Shimabukuro K, Muneyuki E, Yoshida M.

Eur J Biochem. 2002 Jan;269(1):53-60.

38.

Pause and rotation of F(1)-ATPase during catalysis.

Hirono-Hara Y, Noji H, Nishiura M, Muneyuki E, Hara KY, Yasuda R, Kinosita K Jr, Yoshida M.

Proc Natl Acad Sci U S A. 2001 Nov 20;98(24):13649-54. Epub 2001 Nov 13.

39.

ATP synthase--a marvellous rotary engine of the cell.

Yoshida M, Muneyuki E, Hisabori T.

Nat Rev Mol Cell Biol. 2001 Sep;2(9):669-77. Review.

PMID:
11533724
40.

Alkane derivative-bacteriorhodopsin interaction: proton transport and protein structure.

Shibata A, Ikema H, Ueno S, Muneyuki E, Higuti T.

Colloids Surf B Biointerfaces. 2001 Sep;22(1):31-38.

PMID:
11438238
41.

F(0)F(1)-ATP synthase: general structural features of 'ATP-engine' and a problem on free energy transduction.

Muneyuki E, Noji H, Amano T, Masaike T, Yoshida M.

Biochim Biophys Acta. 2000 May 31;1458(2-3):467-81. Review. No abstract available.

42.
43.

Rotation of F(1)-ATPase and the hinge residues of the beta subunit.

Masaike T, Mitome N, Noji H, Muneyuki E, Yasuda R, Kinosita K, Yoshida M.

J Exp Biol. 2000 Jan;203(Pt 1):1-8. Review.

44.
45.
46.

Chloride concentration dependency of the electrogenic activity of halorhodopsin.

Okuno D, Asaumi M, Muneyuki E.

Biochemistry. 1999 Apr 27;38(17):5422-9.

PMID:
10220329
47.

Cross-linking of two beta subunits in the closed conformation in F1-ATPase.

Tsunoda SP, Muneyuki E, Amano T, Yoshida M, Noji H.

J Biol Chem. 1999 Feb 26;274(9):5701-6.

48.

Time-resolved measurements of photovoltage generation by bacteriorhodopsin and halorhodopsin adsorbed on a thin polymer film.

Muneyuki E, Shibazaki C, Ohtani H, Okuno D, Asaumi M, Mogi T.

J Biochem. 1999 Feb;125(2):270-6.

49.

V-ATPase of Thermus thermophilus is inactivated during ATP hydrolysis but can synthesize ATP.

Yokoyama K, Muneyuki E, Amano T, Mizutani S, Yoshida M, Ishida M, Ohkuma S.

J Biol Chem. 1998 Aug 7;273(32):20504-10.

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