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Items: 1 to 50 of 78

1.

Whole exome and targeted gene sequencing to detect pathogenic recessive variants in early onset cerebellar ataxia.

Shakya S, Kumari R, Suroliya V, Tyagi N, Joshi A, Garg A, Singh I, Kalikavil Puthanveedu D, Cherian A, Mukerji M, Srivastava AK, Faruq M.

Clin Genet. 2019 Dec;96(6):566-574. doi: 10.1111/cge.13625. Epub 2019 Sep 1.

PMID:
31429931
2.

Myg1 exonuclease couples the nuclear and mitochondrial translational programs through RNA processing.

Grover R, Burse SA, Shankrit S, Aggarwal A, Kirty K, Narta K, Srivastav R, Ray AK, Malik G, Vats A, Motiani RK, Thukral L, Roy SS, Bhattacharya S, Sharma R, Natarajan K, Mukerji M, Pandey R, Gokhale RS, Natarajan VT.

Nucleic Acids Res. 2019 Jun 20;47(11):5852-5866. doi: 10.1093/nar/gkz371.

3.

First Degree Relatives of Patients with Celiac Disease Harbour an Intestinal Transcriptomic Signature that Might Protect them from Enterocyte Damage.

Acharya P, Kutum R, Pandey R, Mishra A, Saha R, Munjal A, Ahuja V, Mukerji M, Makharia GK.

Clin Transl Gastroenterol. 2018 Oct 8;9(10):195. doi: 10.1038/s41424-018-0059-7.

4.

Generation of three spinocerebellar ataxia type-12 patients derived induced pluripotent stem cell lines (IGIBi002-A, IGIBi003-A and IGIBi004-A).

Kumar D, Hussain A, Srivastava AK, Mukerji M, Mukherjee O, Faruq M.

Stem Cell Res. 2018 Aug;31:216-221. doi: 10.1016/j.scr.2018.08.008. Epub 2018 Aug 14.

5.

Paradigm for disease deconvolution in rare neurodegenerative disorders in Indian population: insights from studies in cerebellar ataxias.

Kumari R, Kumar D, Brahmachari SK, Srivastava AK, Faruq M, Mukerji M.

J Genet. 2018 Jul;97(3):589-609.

6.

Non-gallstone acute pancreatitis and pre-eclampsia: A case report.

Chan C, Mukerji M.

Case Rep Womens Health. 2018 May 2;19:e00063. doi: 10.1016/j.crwh.2018.e00063. eCollection 2018 Jul.

7.

Western Indian Rural Gut Microbial Diversity in Extreme Prakriti Endo-Phenotypes Reveals Signature Microbes.

Chauhan NS, Pandey R, Mondal AK, Gupta S, Verma MK, Jain S, Ahmed V, Patil R, Agarwal D, Girase B, Shrivastava A, Mobeen F, Sharma V, Srivastava TP, Juvekar SK, Prasher B, Mukerji M, Dash D.

Front Microbiol. 2018 Feb 13;9:118. doi: 10.3389/fmicb.2018.00118. eCollection 2018.

8.

Ancestral Variations of the PCDHG Gene Cluster Predispose to Dyslexia in a Multiplex Family.

Naskar T, Faruq M, Banerjee P, Khan M, Midha R, Kumari R, Devasenapathy S, Prajapati B, Sengupta S, Jain D, Mukerji M, Singh NC, Sinha S.

EBioMedicine. 2018 Feb;28:168-179. doi: 10.1016/j.ebiom.2017.12.031. Epub 2018 Jan 9.

9.

Recapitulation of Ayurveda constitution types by machine learning of phenotypic traits.

Tiwari P, Kutum R, Sethi T, Shrivastava A, Girase B, Aggarwal S, Patil R, Agarwal D, Gautam P, Agrawal A, Dash D, Ghosh S, Juvekar S, Mukerji M, Prasher B.

PLoS One. 2017 Oct 5;12(10):e0185380. doi: 10.1371/journal.pone.0185380. eCollection 2017.

10.

Targeted exome sequencing in anti-factor H antibody negative HUS reveals multiple variations.

Thergaonkar RW, Narang A, Gurjar BS, Tiwari P, Puraswani M, Saini H, Sinha A, Varma B, Mukerji M, Hari P, Bagga A.

Clin Exp Nephrol. 2018 Jun;22(3):653-660. doi: 10.1007/s10157-017-1478-6. Epub 2017 Sep 22.

PMID:
28939980
11.

A Complete Association of an intronic SNP rs6798742 with Origin of Spinocerebellar Ataxia Type 7-CAG Expansion Loci in the Indian and Mexican Population.

Faruq M, Magaña JJ, Suroliya V, Narang A, Murillo-Melo NM, Hernández-Hernández O, Srivastava AK, Mukerji M.

Ann Hum Genet. 2017 Sep;81(5):197-204. doi: 10.1111/ahg.12200. Epub 2017 Jun 9.

12.

Comparative Genomics of Host-Symbiont and Free-Living Oceanobacillus Species.

Kumar Mondal A, Kumar J, Pandey R, Gupta S, Kumar M, Bansal G, Mukerji M, Dash D, Singh Chauhan N.

Genome Biol Evol. 2017 May 1;9(5):1175-1182. doi: 10.1093/gbe/evx076.

13.

A perinatal review of singleton stillbirths in an Australian metropolitan tertiary centre.

Kapurubandara S, Melov SJ, Shalou ER, Mukerji M, Yim S, Rao U, Battikhi Z, Karunaratne N, Nayyar R, Alahakoon TI.

PLoS One. 2017 Feb 13;12(2):e0171829. doi: 10.1371/journal.pone.0171829. eCollection 2017.

14.

Alu-miRNA interactions modulate transcript isoform diversity in stress response and reveal signatures of positive selection.

Pandey R, Bhattacharya A, Bhardwaj V, Jha V, Mandal AK, Mukerji M.

Sci Rep. 2016 Sep 2;6:32348. doi: 10.1038/srep32348.

15.

Human satellite-III non-coding RNAs modulate heat-shock-induced transcriptional repression.

Goenka A, Sengupta S, Pandey R, Parihar R, Mohanta GC, Mukerji M, Ganesh S.

J Cell Sci. 2016 Oct 1;129(19):3541-3552. Epub 2016 Aug 15.

16.

Ayurgenomics for stratified medicine: TRISUTRA consortium initiative across ethnically and geographically diverse Indian populations.

Prasher B, Varma B, Kumar A, Khuntia BK, Pandey R, Narang A, Tiwari P, Kutum R, Guin D, Kukreti R, Dash D; TRISUTRA Ayurgenomics Consortium, Mukerji M.

J Ethnopharmacol. 2017 Feb 2;197:274-293. doi: 10.1016/j.jep.2016.07.063. Epub 2016 Jul 22. Review.

PMID:
27457695
17.

Genomic insights into ayurvedic and western approaches to personalized medicine.

Prasher B, Gibson G, Mukerji M.

J Genet. 2016 Mar;95(1):209-28. Review.

18.

Investigation of mitochondrial DNA variations among Indian Friedreich's ataxia (FRDA) patients.

Singh I, Faruq M, Padma MV, Goyal V, Behari M, Grover A, Mukerji M, Srivastava AK.

Mitochondrion. 2015 Nov;25:1-5. doi: 10.1016/j.mito.2015.08.003. Epub 2015 Aug 29.

PMID:
26321457
19.

Combined genetic effects of EGLN1 and VWF modulate thrombotic outcome in hypoxia revealed by Ayurgenomics approach.

Aggarwal S, Gheware A, Agrawal A, Ghosh S, Prasher B, Mukerji M; Indian Genome Variation Consortium.

J Transl Med. 2015 Jun 6;13:184. doi: 10.1186/s12967-015-0542-9.

20.

Spinocerebellar ataxia 7 (SCA7) in Indian population: predilection of ATXN7-CAG expansion mutation in an ethnic population.

Faruq M, Srivastava AK, Singh S, Gupta R, Dada T, Garg A, Behari M, Mukerji M.

Indian J Med Res. 2015 Feb;141(2):187-98.

21.

Population diversity and adaptive evolution in keratinization genes: impact of environment in shaping skin phenotypes.

Gautam P, Chaurasia A, Bhattacharya A, Grover R; Indian Genome Variation Consortium, Mukerji M, Natarajan VT.

Mol Biol Evol. 2015 Mar;32(3):555-73. doi: 10.1093/molbev/msu342. Epub 2014 Dec 21.

PMID:
25534032
22.

Extensive copy number variations in admixed Indian population of African ancestry: potential involvement in adaptation.

Narang A, Jha P, Kumar D, Kutum R, Mondal AK; Indian Genome Variation Consortium, Dash D, Mukerji M.

Genome Biol Evol. 2014 Nov 13;6(12):3171-81. doi: 10.1093/gbe/evu250.

23.

Infantile onset spinocerebellar ataxia 2 (SCA2): a clinical report with review of previous cases.

Singh A, Faruq M, Mukerji M, Dwivedi MK, Pruthi S, Kapoor S.

J Child Neurol. 2014 Jan;29(1):139-44. doi: 10.1177/0883073813509015. Epub 2013 Dec 2. Review.

PMID:
24300164
24.

Novel mutations in typical and atypical genetic loci through exome sequencing in autosomal recessive cerebellar ataxia families.

Faruq M, Narang A, Kumari R, Pandey R, Garg A, Behari M, Dash D, Srivastava AK, Mukerji M.

Clin Genet. 2014 Oct;86(4):335-41. doi: 10.1111/cge.12279. Epub 2013 Oct 13.

PMID:
24102492
25.

Complex patterns of genomic admixture within southern Africa.

Petersen DC, Libiger O, Tindall EA, Hardie RA, Hannick LI, Glashoff RH, Mukerji M; Indian Genome Variation Consortium, Fernandez P, Haacke W, Schork NJ, Hayes VM.

PLoS Genet. 2013;9(3):e1003309. doi: 10.1371/journal.pgen.1003309. Epub 2013 Mar 14.

26.

Transcriptome-wide expansion of non-coding regulatory switches: evidence from co-occurrence of Alu exonization, antisense and editing.

Mandal AK, Pandey R, Jha V, Mukerji M.

Nucleic Acids Res. 2013 Feb 1;41(4):2121-37. doi: 10.1093/nar/gks1457. Epub 2013 Jan 8.

27.

SNPs in stress-responsive rice genes: validation, genotyping, functional relevance and population structure.

Parida SK, Mukerji M, Singh AK, Singh NK, Mohapatra T.

BMC Genomics. 2012 Aug 25;13:426. doi: 10.1186/1471-2164-13-426.

28.

Hypoxia response in asthma: differential modulation on inflammation and epithelial injury.

Ahmad T, Kumar M, Mabalirajan U, Pattnaik B, Aggarwal S, Singh R, Singh S, Mukerji M, Ghosh B, Agrawal A.

Am J Respir Cell Mol Biol. 2012 Jul;47(1):1-10. doi: 10.1165/rcmb.2011-0203OC. Epub 2012 Feb 3.

PMID:
22312019
29.

A genome-wide search for non-UGT1A1 markers associated with unconjugated bilirubin level reveals significant association with a polymorphic marker near a gene of the nucleoporin family.

Datta S, Chowdhury A, Ghosh M, Das K, Jha P, Colah R, Mukerji M, Majumder PP.

Ann Hum Genet. 2012 Jan;76(1):33-41. doi: 10.1111/j.1469-1809.2011.00688.x. Epub 2011 Nov 28.

30.

Heat shock factor binding in Alu repeats expands its involvement in stress through an antisense mechanism.

Pandey R, Mandal AK, Jha V, Mukerji M.

Genome Biol. 2011 Nov 23;12(11):R117. doi: 10.1186/gb-2011-12-11-r117.

31.

Deletion of the APOBEC3B gene strongly impacts susceptibility to falciparum malaria.

Jha P, Sinha S, Kanchan K, Qidwai T, Narang A, Singh PK, Pati SS, Mohanty S, Mishra SK, Sharma SK, Awasthi S, Venkatesh V, Jain S, Basu A, Xu S; Indian Genome Variation Consortium, Mukerji M, Habib S.

Infect Genet Evol. 2012 Jan;12(1):142-8. doi: 10.1016/j.meegid.2011.11.001. Epub 2011 Nov 12.

PMID:
22108670
32.

Diverse facets of COMT: from a plausible predictive marker to a potential drug target for schizophrenia.

Gupta M, Kaur H, Jajodia A, Jain S, Satyamoorthy K, Mukerji M, Thirthalli J; Indian Genome Variation Consortium, Kukreti R.

Curr Mol Med. 2011 Dec;11(9):732-43. Review.

PMID:
21999147
33.

From 'JUNK' to just unexplored noncoding knowledge: the case of transcribed Alus.

Pandey R, Mukerji M.

Brief Funct Genomics. 2011 Sep;10(5):294-311. doi: 10.1093/bfgp/elr029. Review.

PMID:
21987713
34.

A 54 Mb 11qter duplication and 0.9 Mb 1q44 deletion in a child with laryngomalacia and agenesis of corpus callosum.

Lall M, Thakur S, Puri R, Verma I, Mukerji M, Jha P.

Mol Cytogenet. 2011 Sep 21;4:19. doi: 10.1186/1755-8166-4-19.

35.

Ayurgenomics: a new way of threading molecular variability for stratified medicine.

Sethi TP, Prasher B, Mukerji M.

ACS Chem Biol. 2011 Sep 16;6(9):875-80. doi: 10.1021/cb2003016. No abstract available.

PMID:
21923095
36.

Spectrum of large copy number variations in 26 diverse Indian populations: potential involvement in phenotypic diversity.

Gautam P, Jha P, Kumar D, Tyagi S, Varma B, Dash D, Mukhopadhyay A; Indian Genome Variation Consortium, Mukerji M.

Hum Genet. 2012 Jan;131(1):131-43. doi: 10.1007/s00439-011-1050-5. Epub 2011 Jul 9.

PMID:
21744140
37.

Recent admixture in an Indian population of African ancestry.

Narang A, Jha P, Rawat V, Mukhopadhyay A, Dash D; Indian Genome Variation Consortium, Basu A, Mukerji M.

Am J Hum Genet. 2011 Jul 15;89(1):111-20. doi: 10.1016/j.ajhg.2011.06.004. Epub 2011 Jul 7. Erratum in: Am J Hum Genet. 2011 Aug 12;89(2):344. Mukhopadhayay, Arijit [corrected to Mukhopadhyay, Arijit].

38.

Differential serum cytokine levels are associated with cytokine gene polymorphisms in north Indians with active pulmonary tuberculosis.

Abhimanyu, Mangangcha IR, Jha P, Arora K, Mukerji M, Banavaliker JN; Indian Genome Variation Consortium, Brahmachari V, Bose M.

Infect Genet Evol. 2011 Jul;11(5):1015-22. doi: 10.1016/j.meegid.2011.03.017. Epub 2011 Apr 1.

PMID:
21463712
39.

EGLN1 involvement in high-altitude adaptation revealed through genetic analysis of extreme constitution types defined in Ayurveda.

Aggarwal S, Negi S, Jha P, Singh PK, Stobdan T, Pasha MA, Ghosh S, Agrawal A; Indian Genome Variation Consortium, Prasher B, Mukerji M.

Proc Natl Acad Sci U S A. 2010 Nov 2;107(44):18961-6. doi: 10.1073/pnas.1006108107. Epub 2010 Oct 18.

40.

IGVBrowser--a genomic variation resource from diverse Indian populations.

Narang A, Roy RD, Chaurasia A, Mukhopadhyay A, Mukerji M; Indian Genome Variation Consortium, Dash D.

Database (Oxford). 2010 Sep 15;2010:baq022. doi: 10.1093/database/baq022.

41.

North and South Indian populations share a common ancestral origin of Friedreich's ataxia but vary in age of GAA repeat expansion.

Singh I, Faruq M, Mukherjee O, Jain S, Pal PK, Srivastav MV, Behari M, Srivastava AK, Mukerji M.

Ann Hum Genet. 2010 May;74(3):202-10. doi: 10.1111/j.1469-1809.2010.00569.x. Epub 2010 Mar 31.

42.

Mapping human genetic diversity in Asia.

HUGO Pan-Asian SNP Consortium, Abdulla MA, Ahmed I, Assawamakin A, Bhak J, Brahmachari SK, Calacal GC, Chaurasia A, Chen CH, Chen J, Chen YT, Chu J, Cutiongco-de la Paz EM, De Ungria MC, Delfin FC, Edo J, Fuchareon S, Ghang H, Gojobori T, Han J, Ho SF, Hoh BP, Huang W, Inoko H, Jha P, Jinam TA, Jin L, Jung J, Kangwanpong D, Kampuansai J, Kennedy GC, Khurana P, Kim HL, Kim K, Kim S, Kim WY, Kimm K, Kimura R, Koike T, Kulawonganunchai S, Kumar V, Lai PS, Lee JY, Lee S, Liu ET, Majumder PP, Mandapati KK, Marzuki S, Mitchell W, Mukerji M, Naritomi K, Ngamphiw C, Niikawa N, Nishida N, Oh B, Oh S, Ohashi J, Oka A, Ong R, Padilla CD, Palittapongarnpim P, Perdigon HB, Phipps ME, Png E, Sakaki Y, Salvador JM, Sandraling Y, Scaria V, Seielstad M, Sidek MR, Sinha A, Srikummool M, Sudoyo H, Sugano S, Suryadi H, Suzuki Y, Tabbada KA, Tan A, Tokunaga K, Tongsima S, Villamor LP, Wang E, Wang Y, Wang H, Wu JY, Xiao H, Xu S, Yang JO, Shugart YY, Yoo HS, Yuan W, Zhao G, Zilfalil BA; Indian Genome Variation Consortium.

Science. 2009 Dec 11;326(5959):1541-5. doi: 10.1126/science.1177074.

43.

MtSNPscore: a combined evidence approach for assessing cumulative impact of mitochondrial variations in disease.

Bhardwaj A, Mukerji M, Sharma S, Paul J, Gokhale CS, Srivastava AK, Tiwari S.

BMC Bioinformatics. 2009 Aug 27;10 Suppl 8:S7. doi: 10.1186/1471-2105-10-S8-S7.

44.

Utilizing linkage disequilibrium information from Indian Genome Variation Database for mapping mutations: SCA12 case study.

Bahl S, Ahmed I; Indian Genome Variation Consortium, Mukerji M.

J Genet. 2009 Apr;88(1):55-60.

45.

SCA-LSVD: a repeat-oriented locus-specific variation database for genotype to phenotype correlations in spinocerebellar ataxias.

Faruq M, Scaria V, Singh I, Tyagi S, Srivastava AK, Mukerji M.

Hum Mutat. 2009 Jul;30(7):1037-42. doi: 10.1002/humu.21006.

PMID:
19370769
46.

Finding Alu in primate genomes with AF-1.

Shankar R, Kataria B, Mukerji M.

Bioinformation. 2009;3(7):287-8. Epub 2009 Feb 26.

47.

From diversity to delivery: the case of the Indian Genome Variation initiative.

Hardy BJ, Séguin B, Singer PA, Mukerji M, Brahmachari SK, Daar AS.

Nat Rev Genet. 2008 Oct;9 Suppl 1:S9-14. doi: 10.1038/nrg2440. Review.

PMID:
18802420
48.

Whole genome expression and biochemical correlates of extreme constitutional types defined in Ayurveda.

Prasher B, Negi S, Aggarwal S, Mandal AK, Sethi TP, Deshmukh SR, Purohit SG, Sengupta S, Khanna S, Mohammad F, Garg G, Brahmachari SK; Indian Genome Variation Consortium, Mukerji M.

J Transl Med. 2008 Sep 9;6:48. doi: 10.1186/1479-5876-6-48.

49.

SCA 1, SCA 2 & SCA 3/MJD mutations in ataxia syndromes in southern India.

Krishna N, Mohan S, Yashavantha BS, Rammurthy A, Kiran Kumar HB, Mittal U, Tyagi S, Mukerji M, Jain S, Pal PK, Purushottam M.

Indian J Med Res. 2007 Nov;126(5):465-70.

PMID:
18160752
50.

Utility of microwave processed cell blocks as a complement to cervico-vaginal smears.

Gangane N, Mukerji MS; Anshu, Sharma SM.

Diagn Cytopathol. 2007 Jun;35(6):338-41.

PMID:
17497657

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