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Items: 47

1.

Mismatch Recognition by Saccharomyces cerevisiae Msh2-Msh6: Role of Structure and Dynamics.

Li Y, Lombardo Z, Joshi M, Hingorani MM, Mukerji I.

Int J Mol Sci. 2019 Aug 31;20(17). pii: E4271. doi: 10.3390/ijms20174271.

2.

MutSγ-Induced DNA Conformational Changes Provide Insights into Its Role in Meiotic Recombination.

Lahiri S, Li Y, Hingorani MM, Mukerji I.

Biophys J. 2018 Dec 4;115(11):2087-2101. doi: 10.1016/j.bpj.2018.10.029. Epub 2018 Nov 6.

3.

Alignment of the protein substrate hairpin along the SecA two-helix finger primes protein transport in Escherichia coli.

Zhang Q, Lahiri S, Banerjee T, Sun Z, Oliver D, Mukerji I.

Proc Natl Acad Sci U S A. 2017 Aug 29;114(35):9343-9348. doi: 10.1073/pnas.1702201114. Epub 2017 Aug 10.

4.

The Stories Tryptophans Tell: Exploring Protein Dynamics of Heptosyltransferase I from Escherichia coli.

Cote JM, Ramirez-Mondragon CA, Siegel ZS, Czyzyk DJ, Gao J, Sham YY, Mukerji I, Taylor EA.

Biochemistry. 2017 Feb 14;56(6):886-895. doi: 10.1021/acs.biochem.6b00850. Epub 2017 Jan 30.

5.

Photophysical Characterization of Enhanced 6-Methylisoxanthopterin Fluorescence in Duplex DNA.

Moreno A, Knee JL, Mukerji I.

J Phys Chem B. 2016 Dec 8;120(48):12232-12248. Epub 2016 Nov 23.

PMID:
27934220
6.

Fabrication and Experimental Analysis of Axially Oriented Nanofibers.

Aphale AN, Mahakalkar K, Macwan IG, Mukerji I, Cox PJ, Mahapatra M, Singh P, Ajayan PM, Patra PK.

J Nanosci Nanotechnol. 2016 Mar;16(3):2668-76.

PMID:
27455687
7.

Residue Specific and Chirality Dependent Interactions between Carbon Nanotubes and Flagellin.

Macwan IG, Zhao Z, Sobh OT, Mukerji I, Dharmadhikari B, Patra PK.

IEEE/ACM Trans Comput Biol Bioinform. 2016 May-Jun;13(3):541-8. doi: 10.1109/TCBB.2015.2459696.

PMID:
27295637
8.

Probing the Ion Binding Site in a DNA Holliday Junction Using Förster Resonance Energy Transfer (FRET).

Litke JL, Li Y, Nocka LM, Mukerji I.

Int J Mol Sci. 2016 Mar 10;17(3):366. doi: 10.3390/ijms17030366.

9.

Holliday Junction Thermodynamics and Structure: Coarse-Grained Simulations and Experiments.

Wang W, Nocka LM, Wiemann BZ, Hinckley DM, Mukerji I, Starr FW.

Sci Rep. 2016 Mar 14;6:22863. doi: 10.1038/srep22863.

10.

Conserved SecA Signal Peptide-Binding Site Revealed by Engineered Protein Chimeras and Förster Resonance Energy Transfer.

Zhang Q, Li Y, Olson R, Mukerji I, Oliver D.

Biochemistry. 2016 Mar 8;55(9):1291-300. doi: 10.1021/acs.biochem.5b01115. Epub 2016 Feb 19.

11.

Defining the solution state dimer structure of Escherichia coli SecA using Förster resonance energy transfer.

Auclair SM, Oliver DB, Mukerji I.

Biochemistry. 2013 Apr 9;52(14):2388-401. doi: 10.1021/bi301217t. Epub 2013 Mar 29.

12.

Analysis of high-affinity binding of protein kinase R to double-stranded RNA.

Husain B, Mukerji I, Cole JL.

Biochemistry. 2012 Nov 6;51(44):8764-70. doi: 10.1021/bi301226h. Epub 2012 Oct 26.

13.

Applying 6-methylisoxanthopterin-enhanced fluorescence to examine protein-DNA interactions in the picomolar range.

Moreno A, Knee J, Mukerji I.

Biochemistry. 2012 Aug 28;51(34):6847-59. Epub 2012 Aug 16.

14.

Molecular dynamics of a DNA Holliday junction: the inverted repeat sequence d(CCGGTACCGG)₄.

Wheatley EG, Pieniazek SN, Mukerji I, Beveridge DL.

Biophys J. 2012 Feb 8;102(3):552-60. doi: 10.1016/j.bpj.2011.11.4023. Epub 2012 Feb 7.

15.

Nitric oxide reduces sickle hemoglobin polymerization: potential role of nitric oxide-induced charge alteration in depolymerization.

Ikuta T, Thatte HS, Tang JX, Mukerji I, Knee K, Bridges KR, Wang S, Montero-Huerta P, Joshi RM, Head CA.

Arch Biochem Biophys. 2011 Jun 1;510(1):53-61. doi: 10.1016/j.abb.2011.03.013. Epub 2011 Mar 30.

16.

HU binding to a DNA four-way junction probed by Förster resonance energy transfer.

Vitoc CI, Mukerji I.

Biochemistry. 2011 Mar 8;50(9):1432-41. doi: 10.1021/bi1007589. Epub 2011 Feb 9.

17.

Mapping of the signal peptide-binding domain of Escherichia coli SecA using Förster resonance energy transfer.

Auclair SM, Moses JP, Musial-Siwek M, Kendall DA, Oliver DB, Mukerji I.

Biochemistry. 2010 Feb 2;49(4):782-92. doi: 10.1021/bi901446r.

18.

Real time monitoring of sickle cell hemoglobin fiber formation by UV resonance Raman spectroscopy.

Knee KM, Mukerji I.

Biochemistry. 2009 Oct 20;48(41):9903-11. doi: 10.1021/bi901352m.

PMID:
19778007
19.

Formation of amyloid fibrils in vitro from partially unfolded intermediates of human gammaC-crystallin.

Wang Y, Petty S, Trojanowski A, Knee K, Goulet D, Mukerji I, King J.

Invest Ophthalmol Vis Sci. 2010 Feb;51(2):672-8. doi: 10.1167/iovs.09-3987. Epub 2009 Aug 13.

20.

Integration host factor (IHF) dictates the structure of polyamine-DNA condensates: implications for the role of IHF in the compaction of bacterial chromatin.

Sarkar T, Petrov AS, Vitko JR, Santai CT, Harvey SC, Mukerji I, Hud NV.

Biochemistry. 2009 Feb 3;48(4):667-75. doi: 10.1021/bi8019965.

PMID:
19132923
21.

Spectroscopic and molecular dynamics evidence for a sequential mechanism for the A-to-B transition in DNA.

Knee KM, Dixit SB, Aitken CE, Ponomarev S, Beveridge DL, Mukerji I.

Biophys J. 2008 Jul;95(1):257-72. doi: 10.1529/biophysj.107.117606. Epub 2008 Mar 7.

22.

Molecular beacon-equilibrium cyclization detection of DNA-protein complexes.

Vitko J, Rujan I, Androga L, Mukerji I, Bolton PH.

Biophys J. 2007 Nov 1;93(9):3210-7. Epub 2007 Jul 13.

23.

The role of beta93 Cys in the inhibition of Hb S fiber formation.

Knee KM, Roden CK, Flory MR, Mukerji I.

Biophys Chem. 2007 May;127(3):181-93. Epub 2007 Feb 16.

24.

Bacterial protein HU dictates the morphology of DNA condensates produced by crowding agents and polyamines.

Sarkar T, Vitoc I, Mukerji I, Hud NV.

Nucleic Acids Res. 2007;35(3):951-61. Epub 2007 Jan 26.

25.

Examination of the premelting transition of DNA A-tracts using a fluorescent adenosine analogue.

Augustyn KE, Wojtuszewski K, Hawkins ME, Knutson JR, Mukerji I.

Biochemistry. 2006 Apr 18;45(15):5039-47.

PMID:
16605272
26.
27.
28.

Effects of HU binding on the equilibrium cyclization of mismatched, curved, and normal DNA.

Arthanari H, Wojtuszewski K, Mukerji I, Bolton PH.

Biophys J. 2004 Mar;86(3):1625-31.

29.

Nucleotide and phospholipid-dependent control of PPXD and C-domain association for SecA ATPase.

Ding H, Mukerji I, Oliver D.

Biochemistry. 2003 Nov 25;42(46):13468-75.

PMID:
14621992
30.

Bacillus subtilis SecA ATPase exists as an antiparallel dimer in solution.

Ding H, Hunt JF, Mukerji I, Oliver D.

Biochemistry. 2003 Jul 29;42(29):8729-38.

PMID:
12873133
31.

HU binding to bent DNA: a fluorescence resonance energy transfer and anisotropy study.

Wojtuszewski K, Mukerji I.

Biochemistry. 2003 Mar 18;42(10):3096-104.

PMID:
12627977
33.

HU binding to DNA: evidence for multiple complex formation and DNA bending.

Wojtuszewski K, Hawkins ME, Cole JL, Mukerji I.

Biochemistry. 2001 Feb 27;40(8):2588-98. Erratum in: Biochemistry 2001 Apr 17;40(15):4892.

PMID:
11327882
34.

Lipid and signal peptide-induced conformational changes within the C-domain of Escherichia coli SecA protein.

Ding H, Mukerji I, Oliver D.

Biochemistry. 2001 Feb 13;40(6):1835-43.

PMID:
11327846
35.

Solubility of fluoromethemoglobin S: effect of phosphate and temperature on polymerization.

Yohe ME, Sheffield KM, Mukerji I.

Biophys J. 2000 Jun;78(6):3218-26.

36.

Nucleotide binding activity of SecA homodimer is conformationally regulated by temperature and altered by prlD and azi mutations.

Schmidt M, Ding H, Ramamurthy V, Mukerji I, Oliver D.

J Biol Chem. 2000 May 19;275(20):15440-8.

37.

Nucleic Acid Structure Investigated by UV Resonance Raman Spectroscopy: Protonation Effects and A-Tract Structure.

Sokolov L, Wojtuszewski K, Tsukroff E, Mukerji I.

J Biomol Struct Dyn. 2000;17 Suppl 1:327-34.

PMID:
22607441
38.

New light on allostery: dynamic resonance Raman spectroscopy of hemoglobin kempsey.

Hu X, Rodgers KR, Mukerji I, Spiro TG.

Biochemistry. 1999 Mar 23;38(12):3462-7.

PMID:
10090732
39.

Temperature-dependent ultraviolet resonance Raman spectroscopy of the premelting state of dA.dT DNA.

Chan SS, Austin RH, Mukerji I, Spiro TG.

Biophys J. 1997 Apr;72(4):1512-20.

40.
41.

A UV resonance Raman study of d(A(+)-G)10, a single-stranded helix without stacked or paired bases.

Mukerji I, Shiber MC, Spiro TG, Fresco JR.

Biochemistry. 1995 Nov 7;34(44):14300-3.

PMID:
7578033
42.

Hemoglobin allostery: resonance Raman spectroscopy of kinetic intermediates.

Jayaraman V, Rodgers KR, Mukerji I, Spiro TG.

Science. 1995 Sep 29;269(5232):1843-8.

PMID:
7569921
43.

Evidence for the proximity of calcium to the manganese cluster of photosystem II: determination by X-ray absorption spectroscopy.

Latimer MJ, DeRose VJ, Mukerji I, Yachandra VK, Sauer K, Klein MP.

Biochemistry. 1995 Aug 29;34(34):10898-909.

PMID:
7662671
45.

Orientation of the oxygen-evolving manganese complex in a photosystem II membrane preparation: an X-ray absorption spectroscopy study.

Mukerji I, Andrews JC, DeRose VJ, Latimer MJ, Yachandra VK, Sauer K, Klein MP.

Biochemistry. 1994 Aug 16;33(32):9712-21.

PMID:
8068650
46.

R and T states of fluoromethemoglobin probed by ultraviolet resonance Raman spectroscopy.

Jayaraman V, Rodgers KR, Mukerji I, Spiro TG.

Biochemistry. 1993 May 4;32(17):4547-51.

PMID:
8485131
47.

Where plants make oxygen: a structural model for the photosynthetic oxygen-evolving manganese cluster.

Yachandra VK, DeRose VJ, Latimer MJ, Mukerji I, Sauer K, Klein MP.

Science. 1993 Apr 30;260(5108):675-9.

PMID:
8480177

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