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Items: 27

1.

A transient cortical state with sleep-like sensory responses precedes emergence from general anesthesia in humans.

Lewis LD, Piantoni G, Peterfreund RA, Eskandar EN, Harrell PG, Akeju O, Aglio LS, Cash SS, Brown EN, Mukamel EA, Purdon PL.

Elife. 2018 Aug 10;7. pii: e33250. doi: 10.7554/eLife.33250.

2.

Environmental enrichment increases transcriptional and epigenetic differentiation between mouse dorsal and ventral dentate gyrus.

Zhang TY, Keown CL, Wen X, Li J, Vousden DA, Anacker C, Bhattacharyya U, Ryan R, Diorio J, O'Toole N, Lerch JP, Mukamel EA, Meaney MJ.

Nat Commun. 2018 Jan 19;9(1):298. doi: 10.1038/s41467-017-02748-x.

3.

Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex.

Luo C, Keown CL, Kurihara L, Zhou J, He Y, Li J, Castanon R, Lucero J, Nery JR, Sandoval JP, Bui B, Sejnowski TJ, Harkins TT, Mukamel EA, Behrens MM, Ecker JR.

Science. 2017 Aug 11;357(6351):600-604. doi: 10.1126/science.aan3351.

4.

Allele-specific non-CG DNA methylation marks domains of active chromatin in female mouse brain.

Keown CL, Berletch JB, Castanon R, Nery JR, Disteche CM, Ecker JR, Mukamel EA.

Proc Natl Acad Sci U S A. 2017 Apr 4;114(14):E2882-E2890. doi: 10.1073/pnas.1611905114. Epub 2017 Mar 20.

5.

Epigenomic landscapes of retinal rods and cones.

Mo A, Luo C, Davis FP, Mukamel EA, Henry GL, Nery JR, Urich MA, Picard S, Lister R, Eddy SR, Beer MA, Ecker JR, Nathans J.

Elife. 2016 Mar 7;5:e11613. doi: 10.7554/eLife.11613.

6.

Corrigendum: Human body epigenome maps reveal noncanonical DNA methylation variation.

Schultz MD, He Y, Whitaker JW, Hariharan M, Mukamel EA, Leung D, Rajagopal N, Nery JR, Urich MA, Chen H, Lin S, Lin Y, Jung I, Schmitt AD, Selvaraj S, Ren B, Sejnowski TJ, Wang W, Ecker JR.

Nature. 2016 Feb 11;530(7589):242. doi: 10.1038/nature16179. Epub 2015 Nov 25. No abstract available.

PMID:
26605523
7.

Turning over DNA methylation in the mind.

Lister R, Mukamel EA.

Front Neurosci. 2015 Jul 30;9:252. doi: 10.3389/fnins.2015.00252. eCollection 2015. Review.

8.

Disruption of mGluR5 in parvalbumin-positive interneurons induces core features of neurodevelopmental disorders.

Barnes SA, Pinto-Duarte A, Kappe A, Zembrzycki A, Metzler A, Mukamel EA, Lucero J, Wang X, Sejnowski TJ, Markou A, Behrens MM.

Mol Psychiatry. 2015 Oct;20(10):1161-72. doi: 10.1038/mp.2015.113. Epub 2015 Aug 11.

9.

Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain.

Mo A, Mukamel EA, Davis FP, Luo C, Henry GL, Picard S, Urich MA, Nery JR, Sejnowski TJ, Lister R, Eddy SR, Ecker JR, Nathans J.

Neuron. 2015 Jun 17;86(6):1369-84. doi: 10.1016/j.neuron.2015.05.018.

10.

Human body epigenome maps reveal noncanonical DNA methylation variation.

Schultz MD, He Y, Whitaker JW, Hariharan M, Mukamel EA, Leung D, Rajagopal N, Nery JR, Urich MA, Chen H, Lin S, Lin Y, Jung I, Schmitt AD, Selvaraj S, Ren B, Sejnowski TJ, Wang W, Ecker JR.

Nature. 2015 Jul 9;523(7559):212-6. doi: 10.1038/nature14465. Epub 2015 Jun 1. Erratum in: Nature. 2016 Feb 11;530(7589):242.

11.

A transition in brain state during propofol-induced unconsciousness.

Mukamel EA, Pirondini E, Babadi B, Wong KF, Pierce ET, Harrell PG, Walsh JL, Salazar-Gomez AF, Cash SS, Eskandar EN, Weiner VS, Brown EN, Purdon PL.

J Neurosci. 2014 Jan 15;34(3):839-45. doi: 10.1523/JNEUROSCI.5813-12.2014. Erratum in: J Neurosci. 2015 Jun 3;35(22):8684-5.

12.

Global epigenomic reconfiguration during mammalian brain development.

Lister R, Mukamel EA, Nery JR, Urich M, Puddifoot CA, Johnson ND, Lucero J, Huang Y, Dwork AJ, Schultz MD, Yu M, Tonti-Filippini J, Heyn H, Hu S, Wu JC, Rao A, Esteller M, He C, Haghighi FG, Sejnowski TJ, Behrens MM, Ecker JR.

Science. 2013 Aug 9;341(6146):1237905. doi: 10.1126/science.1237905. Epub 2013 Jul 4.

13.

Electroencephalogram signatures of loss and recovery of consciousness from propofol.

Purdon PL, Pierce ET, Mukamel EA, Prerau MJ, Walsh JL, Wong KF, Salazar-Gomez AF, Harrell PG, Sampson AL, Cimenser A, Ching S, Kopell NJ, Tavares-Stoeckel C, Habeeb K, Merhar R, Brown EN.

Proc Natl Acad Sci U S A. 2013 Mar 19;110(12):E1142-51. doi: 10.1073/pnas.1221180110. Epub 2013 Mar 4.

14.

Beamforming approach to phase-amplitude modulation analysis of multi-channel EEG.

Sampson AL, Babadi B, Prerau MJ, Mukamel EA, Brown EN, Purdon PL.

Conf Proc IEEE Eng Med Biol Soc. 2012;2012:6731-4. doi: 10.1109/EMBC.2012.6347539.

15.

Unified resolution bounds for conventional and stochastic localization fluorescence microscopy.

Mukamel EA, Schnitzer MJ.

Phys Rev Lett. 2012 Oct 19;109(16):168102. Epub 2012 Oct 17.

16.

Rapid fragmentation of neuronal networks at the onset of propofol-induced unconsciousness.

Lewis LD, Weiner VS, Mukamel EA, Donoghue JA, Eskandar EN, Madsen JR, Anderson WS, Hochberg LR, Cash SS, Brown EN, Purdon PL.

Proc Natl Acad Sci U S A. 2012 Dec 4;109(49):E3377-86. doi: 10.1073/pnas.1210907109. Epub 2012 Nov 5.

17.

Statistical deconvolution for superresolution fluorescence microscopy.

Mukamel EA, Babcock H, Zhuang X.

Biophys J. 2012 May 16;102(10):2391-400. doi: 10.1016/j.bpj.2012.03.070. Epub 2012 May 15.

18.

Robust time-varying multivariate coherence estimation: application to electroencephalogram recordings during general anesthesia.

Wong KF, Mukamel EA, Salazar AF, Pierce ET, Harrell PG, Walsh JL, Sampson A, Brown EN, Purdon PL.

Conf Proc IEEE Eng Med Biol Soc. 2011;2011:4725-8. doi: 10.1109/IEMBS.2011.6091170.

19.

Bayesian analysis of trinomial data in behavioral experiments and its application to human studies of general anesthesia.

Wong KF, Smith AC, Pierce ET, Harrell PG, Walsh JL, Salazar AF, Tavares CL, Cimenser A, Prerau MJ, Mukamel EA, Sampson A, Purdon PL, Brown EN.

Conf Proc IEEE Eng Med Biol Soc. 2011;2011:4705-8. doi: 10.1109/IEMBS.2011.6091165.

20.

Phase-based measures of cross-frequency coupling in brain electrical dynamics under general anesthesia.

Mukamel EA, Wong KF, Prerau MJ, Brown EN, Purdon PL.

Conf Proc IEEE Eng Med Biol Soc. 2011;2011:1981-4. doi: 10.1109/IEMBS.2011.6090558.

21.

Automated analysis of cellular signals from large-scale calcium imaging data.

Mukamel EA, Nimmerjahn A, Schnitzer MJ.

Neuron. 2009 Sep 24;63(6):747-60. doi: 10.1016/j.neuron.2009.08.009.

22.

Advances in light microscopy for neuroscience.

Wilt BA, Burns LD, Wei Ho ET, Ghosh KK, Mukamel EA, Schnitzer MJ.

Annu Rev Neurosci. 2009;32:435-506. doi: 10.1146/annurev.neuro.051508.135540. Review.

23.

Motor behavior activates Bergmann glial networks.

Nimmerjahn A, Mukamel EA, Schnitzer MJ.

Neuron. 2009 May 14;62(3):400-12. doi: 10.1016/j.neuron.2009.03.019.

24.

High-speed, miniaturized fluorescence microscopy in freely moving mice.

Flusberg BA, Nimmerjahn A, Cocker ED, Mukamel EA, Barretto RP, Ko TH, Burns LD, Jung JC, Schnitzer MJ.

Nat Methods. 2008 Nov;5(11):935-8. doi: 10.1038/nmeth.1256. Epub 2008 Oct 5.

25.

Lock-and-key mechanisms of cerebellar memory recall based on rebound currents.

Wetmore DZ, Mukamel EA, Schnitzer MJ.

J Neurophysiol. 2008 Oct;100(4):2328-47. Epub 2007 Aug 1.

26.

Retinal coding of visual scenes -- repetitive and redundant too?

Mukamel EA, Schnitzer MJ.

Neuron. 2005 May 5;46(3):357-9. Review.

27.

Phase diagram for unzipping DNA with long-range interactions.

Mukamel EA, Shakhnovich EI.

Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Sep;66(3 Pt 1):032901. Epub 2002 Sep 19.

PMID:
12366167

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