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Items: 11

1.

Non-neutral evolution of H3.3-encoding genes occurs without alterations in protein sequence.

Muhire BM, Booker MA, Tolstorukov MY.

Sci Rep. 2019 Jun 11;9(1):8472. doi: 10.1038/s41598-019-44800-4.

2.

Pervasive tertiary structure in the dengue virus RNA genome.

Dethoff EA, Boerneke MA, Gokhale NS, Muhire BM, Martin DP, Sacco MT, McFadden MJ, Weinstein JB, Messer WB, Horner SM, Weeks KM.

Proc Natl Acad Sci U S A. 2018 Nov 6;115(45):11513-11518. doi: 10.1073/pnas.1716689115. Epub 2018 Oct 19.

3.

Recombinant Goose Circoviruses Circulating in Domesticated and Wild Geese in Poland.

Stenzel T, Dziewulska D, Muhire BM, Hartnady P, Kraberger S, Martin DP, Varsani A.

Viruses. 2018 Mar 2;10(3). pii: E107. doi: 10.3390/v10030107.

4.

The global distribution of Banana bunchy top virus reveals little evidence for frequent recent, human-mediated long distance dispersal events.

Stainton D, Martin DP, Muhire BM, Lolohea S, Halafihi M, Lepoint P, Blomme G, Crew KS, Sharman M, Kraberger S, Dayaram A, Walters M, Collings DA, Mabvakure B, Lemey P, Harkins GW, Thomas JE, Varsani A.

Virus Evol. 2015 Sep 10;1(1):vev009. eCollection 2015.

5.

Molecular diversity of Chickpea chlorotic dwarf virus in Sudan: high rates of intra-species recombination - a driving force in the emergence of new strains.

Kraberger S, Kumari SG, Hamed AA, Gronenborn B, Thomas JE, Sharman M, Harkins GW, Muhire BM, Martin DP, Varsani A.

Infect Genet Evol. 2015 Jan;29:203-15. doi: 10.1016/j.meegid.2014.11.024. Epub 2014 Nov 29.

PMID:
25444941
6.

SDT: a virus classification tool based on pairwise sequence alignment and identity calculation.

Muhire BM, Varsani A, Martin DP.

PLoS One. 2014 Sep 26;9(9):e108277. doi: 10.1371/journal.pone.0108277. eCollection 2014.

7.

The influence of secondary structure, selection and recombination on rubella virus nucleotide substitution rate estimates.

Cloete LJ, Tanov EP, Muhire BM, Martin DP, Harkins GW.

Virol J. 2014 Sep 16;11:166. doi: 10.1186/1743-422X-11-166.

8.

Patterns of recombination in HIV-1M are influenced by selection disfavouring the survival of recombinants with disrupted genomic RNA and protein structures.

Golden M, Muhire BM, Semegni Y, Martin DP.

PLoS One. 2014 Jun 17;9(6):e100400. doi: 10.1371/journal.pone.0100400. eCollection 2014.

9.

Extensive recombination-induced disruption of genetic interactions is highly deleterious but can be partially reversed by small numbers of secondary recombination events.

Monjane AL, Martin DP, Lakay F, Muhire BM, Pande D, Varsani A, Harkins G, Shepherd DN, Rybicki EP.

J Virol. 2014 Jul;88(14):7843-51. doi: 10.1128/JVI.00709-14. Epub 2014 Apr 30.

10.

Pigeon circoviruses display patterns of recombination, genomic secondary structure and selection similar to those of beak and feather disease viruses.

Stenzel T, Piasecki T, Chrz─ůstek K, Julian L, Muhire BM, Golden M, Martin DP, Varsani A.

J Gen Virol. 2014 Jun;95(Pt 6):1338-51. doi: 10.1099/vir.0.063917-0. Epub 2014 Mar 17.

PMID:
24639400
11.

Evidence of pervasive biologically functional secondary structures within the genomes of eukaryotic single-stranded DNA viruses.

Muhire BM, Golden M, Murrell B, Lefeuvre P, Lett JM, Gray A, Poon AY, Ngandu NK, Semegni Y, Tanov EP, Monjane AL, Harkins GW, Varsani A, Shepherd DN, Martin DP.

J Virol. 2014 Feb;88(4):1972-89. doi: 10.1128/JVI.03031-13. Epub 2013 Nov 27.

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