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Items: 1 to 50 of 147

1.

A Biostimulant Obtained from the Seaweed Ascophyllum nodosum Protects Arabidopsis thaliana from Severe Oxidative Stress.

Omidbakhshfard MA, Sujeeth N, Gupta S, Omranian N, Guinan KJ, Brotman Y, Nikoloski Z, Fernie AR, Mueller-Roeber B, Gechev TS.

Int J Mol Sci. 2020 Jan 11;21(2). pii: E474. doi: 10.3390/ijms21020474.

2.

Genome draft of the Arabidopsis relative Pachycladon cheesemanii reveals novel strategies to tolerate New Zealand's high ultraviolet B radiation environment.

Dong Y, Gupta S, Sievers R, Wargent JJ, Wheeler D, Putterill J, Macknight R, Gechev T, Mueller-Roeber B, Dijkwel PP.

BMC Genomics. 2019 Nov 12;20(1):838. doi: 10.1186/s12864-019-6084-4.

3.

Multifaceted regulatory function of tomato SlTAF1 in the response to salinity stress.

Devkar V, Thirumalaikumar VP, Xue GP, Vallarino JG, Turečková V, Strnad M, Fernie AR, Hoefgen R, Mueller-Roeber B, Balazadeh S.

New Phytol. 2020 Feb;225(4):1681-1698. doi: 10.1111/nph.16247. Epub 2019 Nov 11.

PMID:
31597191
4.

m5C Methylation Guides Systemic Transport of Messenger RNA over Graft Junctions in Plants.

Yang L, Perrera V, Saplaoura E, Apelt F, Bahin M, Kramdi A, Olas J, Mueller-Roeber B, Sokolowska E, Zhang W, Li R, Pitzalis N, Heinlein M, Zhang S, Genovesio A, Colot V, Kragler F.

Curr Biol. 2019 Aug 5;29(15):2465-2476.e5. doi: 10.1016/j.cub.2019.06.042. Epub 2019 Jul 18.

5.

A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana.

Sujeeth N, Mehterov N, Gupta S, Qureshi MK, Fischer A, Proost S, Omidbakhshfard MA, Obata T, Benina M, Staykov N, Balazadeh S, Walther D, Fernie AR, Mueller-Roeber B, Hille J, Gechev TS.

Cell Mol Life Sci. 2019 Jun 27. doi: 10.1007/s00018-019-03202-5. [Epub ahead of print]

PMID:
31250033
6.

Genome-Wide Analysis of ROS Antioxidant Genes in Resurrection Species Suggest an Involvement of Distinct ROS Detoxification Systems during Desiccation.

Gupta S, Dong Y, Dijkwel PP, Mueller-Roeber B, Gechev TS.

Int J Mol Sci. 2019 Jun 25;20(12). pii: E3101. doi: 10.3390/ijms20123101.

7.

COMPASS for rapid combinatorial optimization of biochemical pathways based on artificial transcription factors.

Naseri G, Behrend J, Rieper L, Mueller-Roeber B.

Nat Commun. 2019 Jun 13;10(1):2615. doi: 10.1038/s41467-019-10224-x.

8.

Tomato fruit ripening factor NOR controls leaf senescence.

Ma X, Balazadeh S, Mueller-Roeber B.

J Exp Bot. 2019 May 9;70(10):2727-2740. doi: 10.1093/jxb/erz098.

9.

A balance to death.

Balazadeh S, Mueller-Roeber B.

Nat Plants. 2018 Nov;4(11):863-864. doi: 10.1038/s41477-018-0279-6. No abstract available.

PMID:
30374092
10.

GROWTH-REGULATING FACTOR 9 negatively regulates arabidopsis leaf growth by controlling ORG3 and restricting cell proliferation in leaf primordia.

Omidbakhshfard MA, Fujikura U, Olas JJ, Xue GP, Balazadeh S, Mueller-Roeber B.

PLoS Genet. 2018 Jul 9;14(7):e1007484. doi: 10.1371/journal.pgen.1007484. eCollection 2018 Jul.

11.

L-SCRaMbLE as a tool for light-controlled Cre-mediated recombination in yeast.

Hochrein L, Mitchell LA, Schulz K, Messerschmidt K, Mueller-Roeber B.

Nat Commun. 2018 May 22;9(1):1931. doi: 10.1038/s41467-017-02208-6.

12.

Molecular Mechanisms Preventing Senescence in Response to Prolonged Darkness in a Desiccation-Tolerant Plant.

Durgud M, Gupta S, Ivanov I, Omidbakhshfard MA, Benina M, Alseekh S, Staykov N, Hauenstein M, Dijkwel PP, Hörtensteiner S, Toneva V, Brotman Y, Fernie AR, Mueller-Roeber B, Gechev TS.

Plant Physiol. 2018 Jul;177(3):1319-1338. doi: 10.1104/pp.18.00055. Epub 2018 May 22.

13.

The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.

Ma X, Zhang Y, Turečková V, Xue GP, Fernie AR, Mueller-Roeber B, Balazadeh S.

Plant Physiol. 2018 Jul;177(3):1286-1302. doi: 10.1104/pp.18.00292. Epub 2018 May 14.

14.

Transcription factor RD26 is a key regulator of metabolic reprogramming during dark-induced senescence.

Kamranfar I, Xue GP, Tohge T, Sedaghatmehr M, Fernie AR, Balazadeh S, Mueller-Roeber B.

New Phytol. 2018 Jun;218(4):1543-1557. doi: 10.1111/nph.15127. Epub 2018 Apr 16.

15.

Comprehensive Metabolomics Studies of Plant Developmental Senescence.

Watanabe M, Tohge T, Balazadeh S, Erban A, Giavalisco P, Kopka J, Mueller-Roeber B, Fernie AR, Hoefgen R.

Methods Mol Biol. 2018;1744:339-358. doi: 10.1007/978-1-4939-7672-0_28.

PMID:
29392679
16.

JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.

Ebrahimian-Motlagh S, Ribone PA, Thirumalaikumar VP, Allu AD, Chan RL, Mueller-Roeber B, Balazadeh S.

Front Plant Sci. 2017 Dec 15;8:2118. doi: 10.3389/fpls.2017.02118. eCollection 2017.

17.

Allelic variants of OsSUB1A cause differential expression of transcription factor genes in response to submergence in rice.

Sharma N, Dang TM, Singh N, Ruzicic S, Mueller-Roeber B, Baumann U, Heuer S.

Rice (N Y). 2018 Jan 8;11(1):2. doi: 10.1186/s12284-017-0192-z.

18.

Synthetic Promoters and Transcription Factors for Heterologous Protein Expression in Saccharomyces cerevisiae.

Machens F, Balazadeh S, Mueller-Roeber B, Messerschmidt K.

Front Bioeng Biotechnol. 2017 Oct 19;5:63. doi: 10.3389/fbioe.2017.00063. eCollection 2017.

19.

PhiReX: a programmable and red light-regulated protein expression switch for yeast.

Hochrein L, Machens F, Messerschmidt K, Mueller-Roeber B.

Nucleic Acids Res. 2017 Sep 6;45(15):9193-9205. doi: 10.1093/nar/gkx610.

20.

NAC transcription factor JUNGBRUNNEN1 enhances drought tolerance in tomato.

Thirumalaikumar VP, Devkar V, Mehterov N, Ali S, Ozgur R, Turkan I, Mueller-Roeber B, Balazadeh S.

Plant Biotechnol J. 2018 Feb;16(2):354-366. doi: 10.1111/pbi.12776. Epub 2017 Aug 4.

21.

The dual role of LESION SIMULATING DISEASE 1 as a condition-dependent scaffold protein and transcription regulator.

Czarnocka W, Van Der Kelen K, Willems P, Szechyńska-Hebda M, Shahnejat-Bushehri S, Balazadeh S, Rusaczonek A, Mueller-Roeber B, Van Breusegem F, Karpiński S.

Plant Cell Environ. 2017 Nov;40(11):2644-2662. doi: 10.1111/pce.12994. Epub 2017 Jul 26.

PMID:
28555890
22.

Plant-Derived Transcription Factors for Orthologous Regulation of Gene Expression in the Yeast Saccharomyces cerevisiae.

Naseri G, Balazadeh S, Machens F, Kamranfar I, Messerschmidt K, Mueller-Roeber B.

ACS Synth Biol. 2017 Sep 15;6(9):1742-1756. doi: 10.1021/acssynbio.7b00094. Epub 2017 Jun 9.

PMID:
28531348
23.

Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.

Shahnejat-Bushehri S, Allu AD, Mehterov N, Thirumalaikumar VP, Alseekh S, Fernie AR, Mueller-Roeber B, Balazadeh S.

Front Plant Sci. 2017 Mar 7;8:214. doi: 10.3389/fpls.2017.00214. eCollection 2017.

24.

AssemblX: a user-friendly toolkit for rapid and reliable multi-gene assemblies.

Hochrein L, Machens F, Gremmels J, Schulz K, Messerschmidt K, Mueller-Roeber B.

Nucleic Acids Res. 2017 Jun 2;45(10):e80. doi: 10.1093/nar/gkx034.

25.

Protein phosphatase AP2C1 negatively regulates basal resistance and defense responses to Pseudomonas syringae.

Shubchynskyy V, Boniecka J, Schweighofer A, Simulis J, Kvederaviciute K, Stumpe M, Mauch F, Balazadeh S, Mueller-Roeber B, Boutrot F, Zipfel C, Meskiene I.

J Exp Bot. 2017 Feb 1;68(5):1169-1183. doi: 10.1093/jxb/erw485.

26.

The plastid metalloprotease FtsH6 and small heat shock protein HSP21 jointly regulate thermomemory in Arabidopsis.

Sedaghatmehr M, Mueller-Roeber B, Balazadeh S.

Nat Commun. 2016 Aug 26;7:12439. doi: 10.1038/ncomms12439.

27.

Characterizing seamless ligation cloning extract for synthetic biological applications.

Messerschmidt K, Hochrein L, Dehm D, Schulz K, Mueller-Roeber B.

Anal Biochem. 2016 Sep 15;509:24-32. doi: 10.1016/j.ab.2016.05.029. Epub 2016 Jun 14.

PMID:
27311554
28.

Gene regulatory network inference using fused LASSO on multiple data sets.

Omranian N, Eloundou-Mbebi JM, Mueller-Roeber B, Nikoloski Z.

Sci Rep. 2016 Feb 11;6:20533. doi: 10.1038/srep20533.

29.

The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress.

Lotkowska ME, Tohge T, Fernie AR, Xue GP, Balazadeh S, Mueller-Roeber B.

Plant Physiol. 2015 Nov;169(3):1862-80. doi: 10.1104/pp.15.00605. Epub 2015 Sep 16.

30.

Priming and memory of stress responses in organisms lacking a nervous system.

Hilker M, Schwachtje J, Baier M, Balazadeh S, Bäurle I, Geiselhardt S, Hincha DK, Kunze R, Mueller-Roeber B, Rillig MC, Rolff J, Romeis T, Schmülling T, Steppuhn A, van Dongen J, Whitcomb SJ, Wurst S, Zuther E, Kopka J.

Biol Rev Camb Philos Soc. 2016 Nov;91(4):1118-1133. doi: 10.1111/brv.12215. Epub 2015 Aug 20. Review.

PMID:
26289992
31.

GLYCOLATE OXIDASE3, a Glycolate Oxidase Homolog of Yeast l-Lactate Cytochrome c Oxidoreductase, Supports l-Lactate Oxidation in Roots of Arabidopsis.

Engqvist MK, Schmitz J, Gertzmann A, Florian A, Jaspert N, Arif M, Balazadeh S, Mueller-Roeber B, Fernie AR, Maurino VG.

Plant Physiol. 2015 Oct;169(2):1042-61. doi: 10.1104/pp.15.01003. Epub 2015 Aug 5.

32.

Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.

Wang T, Tohge T, Ivakov A, Mueller-Roeber B, Fernie AR, Mutwil M, Schippers JH, Persson S.

Plant Physiol. 2015 Oct;169(2):1027-41. doi: 10.1104/pp.15.00962. Epub 2015 Aug 4.

33.

Transcription Factor Arabidopsis Activating Factor1 Integrates Carbon Starvation Responses with Trehalose Metabolism.

Garapati P, Feil R, Lunn JE, Van Dijck P, Balazadeh S, Mueller-Roeber B.

Plant Physiol. 2015 Sep;169(1):379-90. doi: 10.1104/pp.15.00917. Epub 2015 Jul 6.

34.

Phytotoxicity of cobalt ions on the duckweed Lemna minor - Morphology, ion uptake, and starch accumulation.

Sree KS, Keresztes Á, Mueller-Roeber B, Brandt R, Eberius M, Fischer W, Appenroth KJ.

Chemosphere. 2015 Jul;131:149-56. doi: 10.1016/j.chemosphere.2015.03.008. Epub 2015 Mar 31.

PMID:
25840119
35.

Differential metabolic and coexpression networks of plant metabolism.

Omranian N, Kleessen S, Tohge T, Klie S, Basler G, Mueller-Roeber B, Fernie AR, Nikoloski Z.

Trends Plant Sci. 2015 May;20(5):266-268. doi: 10.1016/j.tplants.2015.02.002. Epub 2015 Mar 16.

PMID:
25791509
36.

Identification and mode of inheritance of quantitative trait loci for secondary metabolite abundance in tomato.

Alseekh S, Tohge T, Wendenberg R, Scossa F, Omranian N, Li J, Kleessen S, Giavalisco P, Pleban T, Mueller-Roeber B, Zamir D, Nikoloski Z, Fernie AR.

Plant Cell. 2015 Mar;27(3):485-512. doi: 10.1105/tpc.114.132266. Epub 2015 Mar 13.

37.

Segmentation of biological multivariate time-series data.

Omranian N, Mueller-Roeber B, Nikoloski Z.

Sci Rep. 2015 Mar 11;5:8937. doi: 10.1038/srep08937.

38.

ROS-mediated abiotic stress-induced programmed cell death in plants.

Petrov V, Hille J, Mueller-Roeber B, Gechev TS.

Front Plant Sci. 2015 Feb 18;6:69. doi: 10.3389/fpls.2015.00069. eCollection 2015. Review.

39.

Transcriptomic analysis of nitrogen starvation- and cultivar-specific leaf senescence in winter oilseed rape (Brassica napus L.).

Koeslin-Findeklee F, Rizi VS, Becker MA, Parra-Londono S, Arif M, Balazadeh S, Mueller-Roeber B, Kunze R, Horst WJ.

Plant Sci. 2015 Apr;233:174-185. doi: 10.1016/j.plantsci.2014.11.018. Epub 2015 Jan 22.

PMID:
25711825
40.

Growth-Regulating Factors (GRFs): A Small Transcription Factor Family with Important Functions in Plant Biology.

Omidbakhshfard MA, Proost S, Fujikura U, Mueller-Roeber B.

Mol Plant. 2015 Jul;8(7):998-1010. doi: 10.1016/j.molp.2015.01.013. Epub 2015 Jan 22. Review.

41.

PLAZA 3.0: an access point for plant comparative genomics.

Proost S, Van Bel M, Vaneechoutte D, Van de Peer Y, Inzé D, Mueller-Roeber B, Vandepoele K.

Nucleic Acids Res. 2015 Jan;43(Database issue):D974-81. doi: 10.1093/nar/gku986. Epub 2014 Oct 16.

42.

Systems Analysis of the Response of Photosynthesis, Metabolism, and Growth to an Increase in Irradiance in the Photosynthetic Model Organism Chlamydomonas reinhardtii.

Mettler T, Mühlhaus T, Hemme D, Schöttler MA, Rupprecht J, Idoine A, Veyel D, Pal SK, Yaneva-Roder L, Winck FV, Sommer F, Vosloh D, Seiwert B, Erban A, Burgos A, Arvidsson S, Schönfelder S, Arnold A, Günther M, Krause U, Lohse M, Kopka J, Nikoloski Z, Mueller-Roeber B, Willmitzer L, Bock R, Schroda M, Stitt M.

Plant Cell. 2014 Jun;26(6):2310-2350. Epub 2014 Jun 3.

43.

Transcriptional control of ROS homeostasis by KUODA1 regulates cell expansion during leaf development.

Lu D, Wang T, Persson S, Mueller-Roeber B, Schippers JH.

Nat Commun. 2014 May 7;5:3767. doi: 10.1038/ncomms4767.

44.

A cell type-specific view on the translation of mRNAs from ROS-responsive genes upon paraquat treatment of Arabidopsis thaliana leaves.

Benina M, Ribeiro DM, Gechev TS, Mueller-Roeber B, Schippers JH.

Plant Cell Environ. 2015 Feb;38(2):349-63. doi: 10.1111/pce.12355. Epub 2014 Jun 2.

45.

Reversal of senescence by N resupply to N-starved Arabidopsis thaliana: transcriptomic and metabolomic consequences.

Balazadeh S, Schildhauer J, Araújo WL, Munné-Bosch S, Fernie AR, Proost S, Humbeck K, Mueller-Roeber B.

J Exp Bot. 2014 Jul;65(14):3975-92. doi: 10.1093/jxb/eru119. Epub 2014 Apr 1.

46.

Natural products from resurrection plants: potential for medical applications.

Gechev TS, Hille J, Woerdenbag HJ, Benina M, Mehterov N, Toneva V, Fernie AR, Mueller-Roeber B.

Biotechnol Adv. 2014 Nov 1;32(6):1091-101. doi: 10.1016/j.biotechadv.2014.03.005. Epub 2014 Mar 26. Review.

47.

The contribution of SERF1 to root-to-shoot signaling during salinity stress in rice.

Schmidt R, Caldana C, Mueller-Roeber B, Schippers JH.

Plant Signal Behav. 2014;9(1):e27540. Epub 2014 Jan 21.

48.

A step-by-step protocol for formaldehyde-assisted isolation of regulatory elements from Arabidopsis thaliana.

Omidbakhshfard MA, Winck FV, Arvidsson S, Riaño-Pachón DM, Mueller-Roeber B.

J Integr Plant Biol. 2014 Jun;56(6):527-38. doi: 10.1111/jipb.12151. Epub 2014 Mar 16.

PMID:
24373132
49.

NAC transcription factor speedy hyponastic growth regulates flooding-induced leaf movement in Arabidopsis.

Rauf M, Arif M, Fisahn J, Xue GP, Balazadeh S, Mueller-Roeber B.

Plant Cell. 2013 Dec;25(12):4941-55. doi: 10.1105/tpc.113.117861. Epub 2013 Dec 20.

50.

Genome-wide identification of regulatory elements and reconstruction of gene regulatory networks of the green alga Chlamydomonas reinhardtii under carbon deprivation.

Winck FV, Arvidsson S, Riaño-Pachón DM, Hempel S, Koseska A, Nikoloski Z, Urbina Gomez DA, Rupprecht J, Mueller-Roeber B.

PLoS One. 2013 Nov 1;8(11):e79909. doi: 10.1371/journal.pone.0079909. eCollection 2013. Erratum in: PLoS One. 2014;9(1). doi:10.1371/annotation/63d1c5f9-82c8-406b-b60e-b7d9ecba9408. Vischi Winck, Flavia [corrected to Winck, Flavia Vischi].

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