Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 118

1.

De Novo Genome Sequence Assembly of Dwarf Coconut (Cocos nucifera L. 'Catigan Green Dwarf') Provides Insights into Genomic Variation Between Coconut Types and Related Palm Species.

Lantican DV, Strickler SR, Canama AO, Gardoce RR, Mueller LA, Galvez HF.

G3 (Bethesda). 2019 Jun 5. pii: g3.400215.2019. doi: 10.1534/g3.119.400215. [Epub ahead of print]

2.

Sequencing-Based Bin Map Construction of a Tomato Mapping Population, Facilitating High-Resolution Quantitative Trait Loci Detection.

Gonda I, Ashrafi H, Lyon DA, Strickler SR, Hulse-Kemp AM, Ma Q, Sun H, Stoffel K, Powell AF, Futrell S, Thannhauser TW, Fei Z, Van Deynze AE, Mueller LA, Giovannoni JJ, Foolad MR.

Plant Genome. 2019 Mar;12(1). doi: 10.3835/plantgenome2018.02.0010.

3.

A quick guide for student-driven community genome annotation.

Hosmani PS, Shippy T, Miller S, Benoit JB, Munoz-Torres M, Flores-Gonzalez M, Mueller LA, Wiersma-Koch H, D'Elia T, Brown SJ, Saha S.

PLoS Comput Biol. 2019 Apr 3;15(4):e1006682. doi: 10.1371/journal.pcbi.1006682. eCollection 2019 Apr.

4.

Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community.

Saha S, Hosmani PS, Villalobos-Ayala K, Miller S, Shippy T, Flores M, Rosendale A, Cordola C, Bell T, Mann H, DeAvila G, DeAvila D, Moore Z, Buller K, Ciolkevich K, Nandyal S, Mahoney R, Voorhis JV, Dunlevy M, Farrow D, Hunter D, Morgan T, Shore K, Guzman V, Izsak A, Dixon DE, Cridge A, Cano L, Cao X, Jiang H, Leng N, Johnson S, Cantarel BL, Richards S, English A, Shatters RG, Childers C, Chen MJ, Hunter W, Cilia M, Mueller LA, Munoz-Torres M, Nelson D, Poelchau MF, Benoit JB, Wiersma-Koch H, D'Elia T, Brown SJ.

Database (Oxford). 2019 Jan 1;2019. pii: baz035. doi: 10.1093/database/baz035. No abstract available.

5.

Transcriptomic analysis of cultivated cotton Gossypium hirsutum provides insights into host responses upon whitefly-mediated transmission of cotton leaf curl disease.

Naqvi RZ, Zaidi SS, Mukhtar MS, Amin I, Mishra B, Strickler S, Mueller LA, Asif M, Mansoor S.

PLoS One. 2019 Feb 7;14(2):e0210011. doi: 10.1371/journal.pone.0210011. eCollection 2019.

6.

Fern genomes elucidate land plant evolution and cyanobacterial symbioses.

Li FW, Brouwer P, Carretero-Paulet L, Cheng S, de Vries J, Delaux PM, Eily A, Koppers N, Kuo LY, Li Z, Simenc M, Small I, Wafula E, Angarita S, Barker MS, Bräutigam A, dePamphilis C, Gould S, Hosmani PS, Huang YM, Huettel B, Kato Y, Liu X, Maere S, McDowell R, Mueller LA, Nierop KGJ, Rensing SA, Robison T, Rothfels CJ, Sigel EM, Song Y, Timilsena PR, Van de Peer Y, Wang H, Wilhelmsson PKI, Wolf PG, Xu X, Der JP, Schluepmann H, Wong GK, Pryer KM.

Nat Plants. 2018 Jul;4(7):460-472. doi: 10.1038/s41477-018-0188-8. Epub 2018 Jul 2.

PMID:
29967517
7.

Asian citrus psyllid stylet morphology and applicability to the model for inter-instar stylet replacement in the potato psyllid.

Cicero JM, Alba-Tercedor J, Hunter WB, Cano LM, Saha S, Mueller LA, Brown SJ.

Arthropod Struct Dev. 2018 Sep;47(5):542-551. doi: 10.1016/j.asd.2018.06.007. Epub 2018 Aug 14.

8.

SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases.

Foerster H, Bombarely A, Battey JND, Sierro N, Ivanov NV, Mueller LA.

Database (Oxford). 2018 Jan 1;2018. doi: 10.1093/database/bay035.

9.

Structure and Distribution of Centromeric Retrotransposons at Diploid and Allotetraploid Coffea Centromeric and Pericentromeric Regions.

de Castro Nunes R, Orozco-Arias S, Crouzillat D, Mueller LA, Strickler SR, Descombes P, Fournier C, Moine D, de Kochko A, Yuyama PM, Vanzela ALL, Guyot R.

Front Plant Sci. 2018 Feb 15;9:175. doi: 10.3389/fpls.2018.00175. eCollection 2018.

10.

Impact of a Pharmacist-Provided Spirometry Service on Access to Results in a Primary Care Setting.

Mueller LA, Valentino AS, Clark AD, Li J.

J Prim Care Community Health. 2018 Jan-Dec;9:2150132718759213. doi: 10.1177/2150132718759213.

11.

High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening.

Shinozaki Y, Nicolas P, Fernandez-Pozo N, Ma Q, Evanich DJ, Shi Y, Xu Y, Zheng Y, Snyder SI, Martin LBB, Ruiz-May E, Thannhauser TW, Chen K, Domozych DS, Catalá C, Fei Z, Mueller LA, Giovannoni JJ, Rose JKC.

Nat Commun. 2018 Jan 25;9(1):364. doi: 10.1038/s41467-017-02782-9.

12.

Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community.

Saha S, Hosmani PS, Villalobos-Ayala K, Miller S, Shippy T, Flores M, Rosendale A, Cordola C, Bell T, Mann H, DeAvila G, DeAvila D, Moore Z, Buller K, Ciolkevich K, Nandyal S, Mahoney R, Van Voorhis J, Dunlevy M, Farrow D, Hunter D, Morgan T, Shore K, Guzman V, Izsak A, Dixon DE, Cridge A, Cano L, Cao X, Jiang H, Leng N, Johnson S, Cantarel BL, Richards S, English A, Shatters RG, Childers C, Chen MJ, Hunter W, Cilia M, Mueller LA, Munoz-Torres M, Nelson D, Poelchau MF, Benoit JB, Wiersma-Koch H, D'Elia T, Brown SJ.

Database (Oxford). 2017 Jan 1;2017. doi: 10.1093/database/bax032. Erratum in: Database (Oxford). 2019 Jan 1;2019:.

13.

Transcriptomics reveals multiple resistance mechanisms against cotton leaf curl disease in a naturally immune cotton species, Gossypium arboreum.

Naqvi RZ, Zaidi SS, Akhtar KP, Strickler S, Woldemariam M, Mishra B, Mukhtar MS, Scheffler BE, Scheffler JA, Jander G, Mueller LA, Asif M, Mansoor S.

Sci Rep. 2017 Nov 21;7(1):15880. doi: 10.1038/s41598-017-15963-9.

14.

Rapid defense responses in maize leaves induced by Spodoptera exigua caterpillar feeding.

Tzin V, Hojo Y, Strickler SR, Bartsch LJ, Archer CM, Ahern KR, Zhou S, Christensen SA, Galis I, Mueller LA, Jander G.

J Exp Bot. 2017 Jul 20;68(16):4709-4723. doi: 10.1093/jxb/erx274.

15.

Natural variation in stress response gene activity in the allopolyploid Arabidopsis suecica.

Carlson KD, Fernandez-Pozo N, Bombarely A, Pisupati R, Mueller LA, Madlung A.

BMC Genomics. 2017 Aug 23;18(1):653. doi: 10.1186/s12864-017-4067-x.

16.

Radiostereometric migration measurement of an uncemented Cerafit® femoral stem: 26 patients followed for 10 years.

Sesselmann S, Hong Y, Schlemmer F, Hussnaetter I, Mueller LA, Forst R, Tschunko F.

Biomed Tech (Berl). 2018 Nov 27;63(6):657-663. doi: 10.1515/bmt-2016-0251.

PMID:
28820728
17.

A reference genome for Nicotiana tabacum enables map-based cloning of homeologous loci implicated in nitrogen utilization efficiency.

Edwards KD, Fernandez-Pozo N, Drake-Stowe K, Humphry M, Evans AD, Bombarely A, Allen F, Hurst R, White B, Kernodle SP, Bromley JR, Sanchez-Tamburrino JP, Lewis RS, Mueller LA.

BMC Genomics. 2017 Jun 19;18(1):448. doi: 10.1186/s12864-017-3791-6.

18.

The Tomato Expression Atlas.

Fernandez-Pozo N, Zheng Y, Snyder SI, Nicolas P, Shinozaki Y, Fei Z, Catala C, Giovannoni JJ, Rose JKC, Mueller LA.

Bioinformatics. 2017 Aug 1;33(15):2397-2398. doi: 10.1093/bioinformatics/btx190.

19.

Comparative analysis of Cucurbita pepo metabolism throughout fruit development in acorn squash and oilseed pumpkin.

Wyatt LE, Strickler SR, Mueller LA, Mazourek M.

Hortic Res. 2016 Sep 21;3:16045. doi: 10.1038/hortres.2016.45. eCollection 2016.

20.

Ricebase: a breeding and genetics platform for rice, integrating individual molecular markers, pedigrees and whole-genome-based data.

Edwards JD, Baldo AM, Mueller LA.

Database (Oxford). 2016 Aug 10;2016. pii: baw107. doi: 10.1093/database/baw107. Print 2016.

21.

Diversification of R2R3-MYB Transcription Factors in the Tomato Family Solanaceae.

Gates DJ, Strickler SR, Mueller LA, Olson BJ, Smith SD.

J Mol Evol. 2016 Aug;83(1-2):26-37. doi: 10.1007/s00239-016-9750-z. Epub 2016 Jun 30.

PMID:
27364496
22.

Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida.

Bombarely A, Moser M, Amrad A, Bao M, Bapaume L, Barry CS, Bliek M, Boersma MR, Borghi L, Bruggmann R, Bucher M, D'Agostino N, Davies K, Druege U, Dudareva N, Egea-Cortines M, Delledonne M, Fernandez-Pozo N, Franken P, Grandont L, Heslop-Harrison JS, Hintzsche J, Johns M, Koes R, Lv X, Lyons E, Malla D, Martinoia E, Mattson NS, Morel P, Mueller LA, Muhlemann J, Nouri E, Passeri V, Pezzotti M, Qi Q, Reinhardt D, Rich M, Richert-Pöggeler KR, Robbins TP, Schatz MC, Schranz ME, Schuurink RC, Schwarzacher T, Spelt K, Tang H, Urbanus SL, Vandenbussche M, Vijverberg K, Villarino GH, Warner RM, Weiss J, Yue Z, Zethof J, Quattrocchio F, Sims TL, Kuhlemeier C.

Nat Plants. 2016 May 27;2(6):16074. doi: 10.1038/nplants.2016.74.

23.

Genes conserved for arbuscular mycorrhizal symbiosis identified through phylogenomics.

Bravo A, York T, Pumplin N, Mueller LA, Harrison MJ.

Nat Plants. 2016 Jan 18;2:15208. doi: 10.1038/nplants.2015.208.

PMID:
27249190
24.

Association analysis for disease resistance to Fusarium oxysporum in cape gooseberry (Physalis peruviana L).

Osorio-Guarín JA, Enciso-Rodríguez FE, González C, Fernández-Pozo N, Mueller LA, Barrero LS.

BMC Genomics. 2016 Mar 18;17:248. doi: 10.1186/s12864-016-2568-7.

25.

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.

Caspi R, Billington R, Ferrer L, Foerster H, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Subhraveti P, Weaver DS, Karp PD.

Nucleic Acids Res. 2016 Jan 4;44(D1):D471-80. doi: 10.1093/nar/gkv1164. Epub 2015 Nov 2.

26.

An acorn squash (Cucurbita pepo ssp. ovifera) fruit and seed transcriptome as a resource for the study of fruit traits in Cucurbita.

Wyatt LE, Strickler SR, Mueller LA, Mazourek M.

Hortic Res. 2015 Jan 28;2:14070. doi: 10.1038/hortres.2014.70. eCollection 2015.

27.

An Endophyte Constructs Fungicide-Containing Extracellular Barriers for Its Host Plant.

Soliman SS, Greenwood JS, Bombarely A, Mueller LA, Tsao R, Mosser DD, Raizada MN.

Curr Biol. 2015 Oct 5;25(19):2570-6. doi: 10.1016/j.cub.2015.08.027. Epub 2015 Sep 24.

28.

Dynamic Maize Responses to Aphid Feeding Are Revealed by a Time Series of Transcriptomic and Metabolomic Assays.

Tzin V, Fernandez-Pozo N, Richter A, Schmelz EA, Schoettner M, Schäfer M, Ahern KR, Meihls LN, Kaur H, Huffaker A, Mori N, Degenhardt J, Mueller LA, Jander G.

Plant Physiol. 2015 Nov;169(3):1727-43. doi: 10.1104/pp.15.01039. Epub 2015 Sep 16.

29.

Comparative genomics and phylogenetic discordance of cultivated tomato and close wild relatives.

Strickler SR, Bombarely A, Munkvold JD, York T, Menda N, Martin GB, Mueller LA.

PeerJ. 2015 Feb 26;3:e793. doi: 10.7717/peerj.793. eCollection 2015.

30.

The SGN VIGS tool: user-friendly software to design virus-induced gene silencing (VIGS) constructs for functional genomics.

Fernandez-Pozo N, Rosli HG, Martin GB, Mueller LA.

Mol Plant. 2015 Mar;8(3):486-8. doi: 10.1016/j.molp.2014.11.024. Epub 2014 Dec 30. No abstract available.

31.

solGS: a web-based tool for genomic selection.

Tecle IY, Edwards JD, Menda N, Egesi C, Rabbi IY, Kulakow P, Kawuki R, Jannink JL, Mueller LA.

BMC Bioinformatics. 2014 Dec 14;15:398. doi: 10.1186/s12859-014-0398-7.

32.

The Sol Genomics Network (SGN)--from genotype to phenotype to breeding.

Fernandez-Pozo N, Menda N, Edwards JD, Saha S, Tecle IY, Strickler SR, Bombarely A, Fisher-York T, Pujar A, Foerster H, Yan A, Mueller LA.

Nucleic Acids Res. 2015 Jan;43(Database issue):D1036-41. doi: 10.1093/nar/gku1195. Epub 2014 Nov 26.

33.

Analysis of wild-species introgressions in tomato inbreds uncovers ancestral origins.

Menda N, Strickler SR, Edwards JD, Bombarely A, Dunham DM, Martin GB, Mejia L, Hutton SF, Havey MJ, Maxwell DP, Mueller LA.

BMC Plant Biol. 2014 Oct 28;14:287. doi: 10.1186/s12870-014-0287-2.

34.

Genetic structure of the four wild tomato species in the Solanum peruvianum s.l. species complex.

Labate JA, Robertson LD, Strickler SR, Mueller LA.

Genome. 2014 Mar;57(3):169-80. doi: 10.1139/gen-2014-0003. Epub 2014 May 5.

PMID:
24884691
35.

Choices for patients "without a choice": Interviews with patients who received a left ventricular assist device as destination therapy.

Ottenberg AL, Cook KE, Topazian RJ, Mueller LA, Mueller PS, Swetz KM.

Circ Cardiovasc Qual Outcomes. 2014 May;7(3):368-73. doi: 10.1161/CIRCOUTCOMES.113.000660. Epub 2014 May 13.

PMID:
24823955
36.

Quantitative network measures as biomarkers for classifying prostate cancer disease states: a systems approach to diagnostic biomarkers.

Dehmer M, Mueller LA, Emmert-Streib F.

PLoS One. 2013 Nov 13;8(11):e77602. doi: 10.1371/journal.pone.0077602. eCollection 2013.

37.

[COMMODE] a large-scale database of molecular descriptors using compounds from PubChem.

Dander A, Mueller LA, Gallasch R, Pabinger S, Emmert-Streib F, Graber A, Dehmer M.

Source Code Biol Med. 2013 Nov 13;8(1):22. doi: 10.1186/1751-0473-8-22.

38.

The Genome Database for Rosaceae (GDR): year 10 update.

Jung S, Ficklin SP, Lee T, Cheng CH, Blenda A, Zheng P, Yu J, Bombarely A, Cho I, Ru S, Evans K, Peace C, Abbott AG, Mueller LA, Olmstead MA, Main D.

Nucleic Acids Res. 2014 Jan;42(Database issue):D1237-44. doi: 10.1093/nar/gkt1012. Epub 2013 Nov 12.

39.

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.

Caspi R, Altman T, Billington R, Dreher K, Foerster H, Fulcher CA, Holland TA, Keseler IM, Kothari A, Kubo A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Subhraveti P, Weaver DS, Weerasinghe D, Zhang P, Karp PD.

Nucleic Acids Res. 2014 Jan;42(Database issue):D459-71. doi: 10.1093/nar/gkt1103. Epub 2013 Nov 12.

40.

The tomato kinome and the tomato kinase library ORFeome: novel resources for the study of kinases and signal transduction in tomato and solanaceae species.

Singh DK, Calviño M, Brauer EK, Fernandez-Pozo N, Strickler S, Yalamanchili R, Suzuki H, Aoki K, Shibata D, Stratmann JW, Popescu GV, Mueller LA, Popescu SC.

Mol Plant Microbe Interact. 2014 Jan;27(1):7-17. doi: 10.1094/MPMI-08-13-0218-TA.

41.

Evaluating effects of self-reported domestic physical activity on pregnancy and neonatal outcomes in "stay at home" military wives.

Putnam KF, Mueller LA, Magann EF, Thagard A, Johnson AM, Ounpraseuth ST, Morrison JC.

Mil Med. 2013 Aug;178(8):893-8. doi: 10.7205/MILMED-D-13-00045.

PMID:
23929051
42.

Radiostereometric migration analysis of the Lubinus SP II hip stem: 59 hips followed for 2 years.

Wierer T, Forst R, Mueller LA, Sesselmann S.

Biomed Tech (Berl). 2013 Aug;58(4):333-41. doi: 10.1515/bmt-2012-0038.

PMID:
23912218
44.

Linking the potato genome to the conserved ortholog set (COS) markers.

Lindqvist-Kreuze H, Cho K, Portal L, Rodríguez F, Simon R, Mueller LA, Spooner DM, Bonierbale M.

BMC Genet. 2013 Jun 8;14:51. doi: 10.1186/1471-2156-14-51.

45.

From manual curation to visualization of gene families and networks across Solanaceae plant species.

Pujar A, Menda N, Bombarely A, Edwards JD, Strickler SR, Mueller LA.

Database (Oxford). 2013 May 15;2013:bat028. doi: 10.1093/database/bat028. Print 2013.

46.

"We as Human Beings Get Farther and Farther Apart": the experiences of patients with remote monitoring systems.

Ottenberg AL, Swetz KM, Mueller LA, Gerhardson S, Mueller PS.

Heart Lung. 2013 Sep-Oct;42(5):313-9. doi: 10.1016/j.hrtlng.2013.03.002. Epub 2013 Apr 10.

47.

Characterization of transcriptional changes in ERG rearrangement-positive prostate cancer identifies the regulation of metabolic sensors such as neuropeptide Y.

Massoner P, Kugler KG, Unterberger K, Kuner R, Mueller LA, Fälth M, Schäfer G, Seifarth C, Ecker S, Verdorfer I, Graber A, Sültmann H, Klocker H.

PLoS One. 2013;8(2):e55207. doi: 10.1371/journal.pone.0055207. Epub 2013 Feb 4.

48.

Perspectives of patients with cardiovascular implantable electronic devices who received advisory warnings.

Ottenberg AL, Mueller LA, Mueller PS.

Heart Lung. 2013 Jan-Feb;42(1):59-64. doi: 10.1016/j.hrtlng.2012.09.007.

49.

Readability of "Dear Patient" device advisory notification letters created by a device manufacturer.

Mueller LA, Sharma A, Ottenberg AL, Mueller PS.

Heart Rhythm. 2013 Apr;10(4):501-7. doi: 10.1016/j.hrthm.2012.12.022. Epub 2012 Dec 27.

PMID:
23274371
50.

The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions.

Guo S, Zhang J, Sun H, Salse J, Lucas WJ, Zhang H, Zheng Y, Mao L, Ren Y, Wang Z, Min J, Guo X, Murat F, Ham BK, Zhang Z, Gao S, Huang M, Xu Y, Zhong S, Bombarely A, Mueller LA, Zhao H, He H, Zhang Y, Zhang Z, Huang S, Tan T, Pang E, Lin K, Hu Q, Kuang H, Ni P, Wang B, Liu J, Kou Q, Hou W, Zou X, Jiang J, Gong G, Klee K, Schoof H, Huang Y, Hu X, Dong S, Liang D, Wang J, Wu K, Xia Y, Zhao X, Zheng Z, Xing M, Liang X, Huang B, Lv T, Wang J, Yin Y, Yi H, Li R, Wu M, Levi A, Zhang X, Giovannoni JJ, Wang J, Li Y, Fei Z, Xu Y.

Nat Genet. 2013 Jan;45(1):51-8. doi: 10.1038/ng.2470. Epub 2012 Nov 25.

Supplemental Content

Loading ...
Support Center