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Items: 1 to 50 of 101

1.

RNA Isolation and Analysis of LncRNAs from Gametophytes of Maize.

Han L, Li L, Muehlbauer GJ, Fowler JE, Evans MMS.

Methods Mol Biol. 2019;1933:67-86. doi: 10.1007/978-1-4939-9045-0_4.

PMID:
30945179
2.

Dense genotyping-by-sequencing linkage maps of two Synthetic W7984×Opata reference populations provide insights into wheat structural diversity.

Gutierrez-Gonzalez JJ, Mascher M, Poland J, Muehlbauer GJ.

Sci Rep. 2019 Feb 11;9(1):1793. doi: 10.1038/s41598-018-38111-3.

3.

A Critical Assessment of 60 Years of Maize Intragenic Recombination.

Okagaki RJ, Dukowic-Schulze S, Eggleston WB, Muehlbauer GJ.

Front Plant Sci. 2018 Oct 29;9:1560. doi: 10.3389/fpls.2018.01560. eCollection 2018. Review.

4.

QTL Mapping of Fusarium Head Blight and Correlated Agromorphological Traits in an Elite Barley Cultivar Rasmusson.

Huang Y, Haas M, Heinen S, Steffenson BJ, Smith KP, Muehlbauer GJ.

Front Plant Sci. 2018 Aug 28;9:1260. doi: 10.3389/fpls.2018.01260. eCollection 2018.

5.

Correction to: Genome-wide discovery and characterization of maize long non-coding RNAs.

Li L, Eichten SR, Shimizu R, Petsch K, Yeh CT, Wu W, Chettoor AM, Givan SA, Cole RA, Fowler JE, Evans MMS, Scanlon MJ, Yu J, Schnable PS, Timmermans MCP, Springer NM, Muehlbauer GJ.

Genome Biol. 2018 Aug 23;19(1):122. doi: 10.1186/s13059-018-1508-z.

6.

Correction: Mendelian and Non-Mendelian Regulation of Gene Expression in Maize.

Li L, Petsch K, Shimizu R, Liu S, Xu WW, Ying K, Yu J, Scanlon MJ, Schnable PS, Timmermans MCP, Springer NM, Muehlbauer GJ.

PLoS Genet. 2018 Feb 14;14(2):e1007234. doi: 10.1371/journal.pgen.1007234. eCollection 2018 Feb.

7.

ELIGULUM-A Regulates Lateral Branch and Leaf Development in Barley.

Okagaki RJ, Haaning A, Bilgic H, Heinen S, Druka A, Bayer M, Waugh R, Muehlbauer GJ.

Plant Physiol. 2018 Apr;176(4):2750-2760. doi: 10.1104/pp.17.01459. Epub 2018 Feb 12.

8.

Circular RNAs mediated by transposons are associated with transcriptomic and phenotypic variation in maize.

Chen L, Zhang P, Fan Y, Lu Q, Li Q, Yan J, Muehlbauer GJ, Schnable PS, Dai M, Li L.

New Phytol. 2018 Feb;217(3):1292-1306. doi: 10.1111/nph.14901. Epub 2017 Nov 20.

9.

Genome-Wide Association Mapping of Stem Rust Resistance in Hordeum vulgare subsp. spontaneum.

Sallam AH, Tyagi P, Brown-Guedira G, Muehlbauer GJ, Hulse A, Steffenson BJ.

G3 (Bethesda). 2017 Oct 5;7(10):3491-3507. doi: 10.1534/g3.117.300222.

10.

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.

Beier S, Himmelbach A, Colmsee C, Zhang XQ, Barrero RA, Zhang Q, Li L, Bayer M, Bolser D, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Sampath D, Heavens D, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke JK, Tan C, Wang S, Yin S, Zhou G, Poland JA, Bellgard MI, Houben A, Doležel J, Ayling S, Lonardi S, Langridge P, Muehlbauer GJ, Kersey P, Clark MD, Caccamo M, Schulman AH, Platzer M, Close TJ, Hansson M, Zhang G, Braumann I, Li C, Waugh R, Scholz U, Stein N, Mascher M.

Sci Data. 2017 Apr 27;4:170044. doi: 10.1038/sdata.2017.44.

11.

A chromosome conformation capture ordered sequence of the barley genome.

Mascher M, Gundlach H, Himmelbach A, Beier S, Twardziok SO, Wicker T, Radchuk V, Dockter C, Hedley PE, Russell J, Bayer M, Ramsay L, Liu H, Haberer G, Zhang XQ, Zhang Q, Barrero RA, Li L, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Bolser D, Colmsee C, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Chailyan A, Sampath D, Heavens D, Clissold L, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke JK, Tan C, Wang P, Wang S, Yin S, Zhou G, Poland JA, Bellgard MI, Borisjuk L, Houben A, Doležel J, Ayling S, Lonardi S, Kersey P, Langridge P, Muehlbauer GJ, Clark MD, Caccamo M, Schulman AH, Mayer KFX, Platzer M, Close TJ, Scholz U, Hansson M, Zhang G, Braumann I, Spannagl M, Li C, Waugh R, Stein N.

Nature. 2017 Apr 26;544(7651):427-433. doi: 10.1038/nature22043.

12.

A barley UDP-glucosyltransferase inactivates nivalenol and provides Fusarium Head Blight resistance in transgenic wheat.

Li X, Michlmayr H, Schweiger W, Malachova A, Shin S, Huang Y, Dong Y, Wiesenberger G, McCormick S, Lemmens M, Fruhmann P, Hametner C, Berthiller F, Adam G, Muehlbauer GJ.

J Exp Bot. 2017 Apr 1;68(9):2187-2197. doi: 10.1093/jxb/erx109.

13.

An Induced Chromosomal Translocation in Soybean Disrupts a KASI Ortholog and Is Associated with a High-Sucrose and Low-Oil Seed Phenotype.

Dobbels AA, Michno JM, Campbell BW, Virdi KS, Stec AO, Muehlbauer GJ, Naeve SL, Stupar RM.

G3 (Bethesda). 2017 Apr 3;7(4):1215-1223. doi: 10.1534/g3.116.038596.

14.

Examining the Transcriptional Response in Wheat Near-Isogenic Lines to Infection and Deoxynivalenol Treatment.

Hofstad AN, Nussbaumer T, Akhunov E, Shin S, Kugler KG, Kistler HC, Mayer KF, Muehlbauer GJ.

Plant Genome. 2016 Mar;9(1). doi: 10.3835/plantgenome2015.05.0032.

15.

Co-expression network analysis of duplicate genes in maize (Zea mays L.) reveals no subgenome bias.

Li L, Briskine R, Schaefer R, Schnable PS, Myers CL, Flagel LE, Springer NM, Muehlbauer GJ.

BMC Genomics. 2016 Nov 4;17(1):875.

16.

Genome-Wide Association Study of Spot Form of Net Blotch Resistance in the Upper Midwest Barley Breeding Programs.

Burlakoti RR, Gyawali S, Chao S, Smith KP, Horsley RD, Cooper B, Muehlbauer GJ, Neate SM.

Phytopathology. 2017 Jan;107(1):100-108. Epub 2016 Oct 11.

17.

Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation.

Russell J, Mascher M, Dawson IK, Kyriakidis S, Calixto C, Freund F, Bayer M, Milne I, Marshall-Griffiths T, Heinen S, Hofstad A, Sharma R, Himmelbach A, Knauft M, van Zonneveld M, Brown JW, Schmid K, Kilian B, Muehlbauer GJ, Stein N, Waugh R.

Nat Genet. 2016 Sep;48(9):1024-30. doi: 10.1038/ng.3612. Epub 2016 Jul 18.

PMID:
27428750
18.

Genomic analysis of 6,000-year-old cultivated grain illuminates the domestication history of barley.

Mascher M, Schuenemann VJ, Davidovich U, Marom N, Himmelbach A, Hübner S, Korol A, David M, Reiter E, Riehl S, Schreiber M, Vohr SH, Green RE, Dawson IK, Russell J, Kilian B, Muehlbauer GJ, Waugh R, Fahima T, Krause J, Weiss E, Stein N.

Nat Genet. 2016 Sep;48(9):1089-93. doi: 10.1038/ng.3611. Epub 2016 Jul 18.

PMID:
27428749
19.

Fast neutron-induced structural rearrangements at a soybean NAP1 locus result in gnarled trichomes.

Campbell BW, Hofstad AN, Sreekanta S, Fu F, Kono TJ, O'Rourke JA, Vance CP, Muehlbauer GJ, Stupar RM.

Theor Appl Genet. 2016 Sep;129(9):1725-38. doi: 10.1007/s00122-016-2735-x. Epub 2016 Jun 9.

20.
21.

Development and Genetic Characterization of an Advanced Backcross-Nested Association Mapping (AB-NAM) Population of Wild × Cultivated Barley.

Nice LM, Steffenson BJ, Brown-Guedira GL, Akhunov ED, Liu C, Kono TJ, Morrell PL, Blake TK, Horsley RD, Smith KP, Muehlbauer GJ.

Genetics. 2016 Jul;203(3):1453-67. doi: 10.1534/genetics.116.190736. Epub 2016 May 10.

22.

Genome-wide recombination dynamics are associated with phenotypic variation in maize.

Pan Q, Li L, Yang X, Tong H, Xu S, Li Z, Li W, Muehlbauer GJ, Li J, Yan J.

New Phytol. 2016 May;210(3):1083-94. doi: 10.1111/nph.13810. Epub 2015 Dec 31.

23.

The Effects of Both Recent and Long-Term Selection and Genetic Drift Are Readily Evident in North American Barley Breeding Populations.

Poets AM, Mohammadi M, Seth K, Wang H, Kono TJ, Fang Z, Muehlbauer GJ, Smith KP, Morrell PL.

G3 (Bethesda). 2015 Dec 29;6(3):609-22. doi: 10.1534/g3.115.024349.

24.

Genetic control of morphometric diversity in the maize shoot apical meristem.

Leiboff S, Li X, Hu HC, Todt N, Yang J, Li X, Yu X, Muehlbauer GJ, Timmermans MC, Yu J, Schnable PS, Scanlon MJ.

Nat Commun. 2015 Nov 20;6:8974. doi: 10.1038/ncomms9974.

25.

Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome.

Muñoz-Amatriaín M, Lonardi S, Luo M, Madishetty K, Svensson JT, Moscou MJ, Wanamaker S, Jiang T, Kleinhofs A, Muehlbauer GJ, Wise RP, Stein N, Ma Y, Rodriguez E, Kudrna D, Bhat PR, Chao S, Condamine P, Heinen S, Resnik J, Wing R, Witt HN, Alpert M, Beccuti M, Bozdag S, Cordero F, Mirebrahim H, Ounit R, Wu Y, You F, Zheng J, Simková H, Dolezel J, Grimwood J, Schmutz J, Duma D, Altschmied L, Blake T, Bregitzer P, Cooper L, Dilbirligi M, Falk A, Feiz L, Graner A, Gustafson P, Hayes PM, Lemaux P, Mammadov J, Close TJ.

Plant J. 2015 Oct;84(1):216-27. doi: 10.1111/tpj.12959. Epub 2015 Sep 21.

26.

Transgenic Wheat Expressing a Barley UDP-Glucosyltransferase Detoxifies Deoxynivalenol and Provides High Levels of Resistance to Fusarium graminearum.

Li X, Shin S, Heinen S, Dill-Macky R, Berthiller F, Nersesian N, Clemente T, McCormick S, Muehlbauer GJ.

Mol Plant Microbe Interact. 2015 Nov;28(11):1237-46. doi: 10.1094/MPMI-03-15-0062-R. Epub 2015 Oct 23.

27.

The barley Uniculme4 gene encodes a BLADE-ON-PETIOLE-like protein that controls tillering and leaf patterning.

Tavakol E, Okagaki R, Verderio G, Shariati J V, Hussien A, Bilgic H, Scanlon MJ, Todt NR, Close TJ, Druka A, Waugh R, Steuernagel B, Ariyadasa R, Himmelbach A, Stein N, Muehlbauer GJ, Rossini L.

Plant Physiol. 2015 May;168(1):164-74. doi: 10.1104/pp.114.252882. Epub 2015 Mar 27.

28.

Diversity of maize shoot apical meristem architecture and its relationship to plant morphology.

Thompson AM, Yu J, Timmermans MC, Schnable P, Crants JC, Scanlon MJ, Muehlbauer GJ.

G3 (Bethesda). 2015 Mar 5;5(5):819-27. doi: 10.1534/g3.115.017541.

29.

A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome.

Chapman JA, Mascher M, Buluç A, Barry K, Georganas E, Session A, Strnadova V, Jenkins J, Sehgal S, Oliker L, Schmutz J, Yelick KA, Scholz U, Waugh R, Poland JA, Muehlbauer GJ, Stein N, Rokhsar DS.

Genome Biol. 2015 Jan 31;16:26. doi: 10.1186/s13059-015-0582-8.

30.

Genome resilience and prevalence of segmental duplications following fast neutron irradiation of soybean.

Bolon YT, Stec AO, Michno JM, Roessler J, Bhaskar PB, Ries L, Dobbels AA, Campbell BW, Young NP, Anderson JE, Grant DM, Orf JH, Naeve SL, Muehlbauer GJ, Vance CP, Stupar RM.

Genetics. 2014 Nov;198(3):967-81. doi: 10.1534/genetics.114.170340. Epub 2014 Sep 10.

31.

Genetic control of maize shoot apical meristem architecture.

Thompson AM, Crants J, Schnable PS, Yu J, Timmermans MC, Springer NM, Scanlon MJ, Muehlbauer GJ.

G3 (Bethesda). 2014 May 22;4(7):1327-37. doi: 10.1534/g3.114.011940.

32.

Two genomic regions contribute disproportionately to geographic differentiation in wild barley.

Fang Z, Gonzales AM, Clegg MT, Smith KP, Muehlbauer GJ, Steffenson BJ, Morrell PL.

G3 (Bethesda). 2014 Apr 22;4(7):1193-203. doi: 10.1534/g3.114.010561.

33.

The USDA barley core collection: genetic diversity, population structure, and potential for genome-wide association studies.

Muñoz-Amatriaín M, Cuesta-Marcos A, Endelman JB, Comadran J, Bonman JM, Bockelman HE, Chao S, Russell J, Waugh R, Hayes PM, Muehlbauer GJ.

PLoS One. 2014 Apr 14;9(4):e94688. doi: 10.1371/journal.pone.0094688. eCollection 2014.

34.

Barley genetic variation: implications for crop improvement.

Muñoz-Amatriaín M, Cuesta-Marcos A, Hayes PM, Muehlbauer GJ.

Brief Funct Genomics. 2014 Jul;13(4):341-50. doi: 10.1093/bfgp/elu006. Epub 2014 Mar 22.

PMID:
24658880
35.

Genome-wide discovery and characterization of maize long non-coding RNAs.

Li L, Eichten SR, Shimizu R, Petsch K, Yeh CT, Wu W, Chettoor AM, Givan SA, Cole RA, Fowler JE, Evans MM, Scanlon MJ, Yu J, Schnable PS, Timmermans MC, Springer NM, Muehlbauer GJ.

Genome Biol. 2014 Feb 27;15(2):R40. doi: 10.1186/gb-2014-15-2-r40. Erratum in: Genome Biol. 2018 Aug 23;19(1):122.

36.

Zearalenone-16-O-glucoside: a new masked mycotoxin.

Kovalsky Paris MP, Schweiger W, Hametner C, Stückler R, Muehlbauer GJ, Varga E, Krska R, Berthiller F, Adam G.

J Agric Food Chem. 2014 Feb 5;62(5):1181-9. doi: 10.1021/jf405627d. Epub 2014 Jan 21.

PMID:
24386883
37.

A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms.

Ariyadasa R, Mascher M, Nussbaumer T, Schulte D, Frenkel Z, Poursarebani N, Zhou R, Steuernagel B, Gundlach H, Taudien S, Felder M, Platzer M, Himmelbach A, Schmutzer T, Hedley PE, Muehlbauer GJ, Scholz U, Korol A, Mayer KF, Waugh R, Langridge P, Graner A, Stein N.

Plant Physiol. 2014 Jan;164(1):412-23. doi: 10.1104/pp.113.228213. Epub 2013 Nov 15.

38.

Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).

Mascher M, Muehlbauer GJ, Rokhsar DS, Chapman J, Schmutz J, Barry K, Muñoz-Amatriaín M, Close TJ, Wise RP, Schulman AH, Himmelbach A, Mayer KF, Scholz U, Poland JA, Stein N, Waugh R.

Plant J. 2013 Nov;76(4):718-27. doi: 10.1111/tpj.12319. Epub 2013 Oct 10.

39.

Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond.

Mascher M, Richmond TA, Gerhardt DJ, Himmelbach A, Clissold L, Sampath D, Ayling S, Steuernagel B, Pfeifer M, D'Ascenzo M, Akhunov ED, Hedley PE, Gonzales AM, Morrell PL, Kilian B, Blattner FR, Scholz U, Mayer KF, Flavell AJ, Muehlbauer GJ, Waugh R, Jeddeloh JA, Stein N.

Plant J. 2013 Nov;76(3):494-505. doi: 10.1111/tpj.12294. Epub 2013 Aug 24.

40.

Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome.

Muñoz-Amatriaín M, Eichten SR, Wicker T, Richmond TA, Mascher M, Steuernagel B, Scholz U, Ariyadasa R, Spannagl M, Nussbaumer T, Mayer KF, Taudien S, Platzer M, Jeddeloh JA, Springer NM, Muehlbauer GJ, Stein N.

Genome Biol. 2013 Jun 12;14(6):R58. doi: 10.1186/gb-2013-14-6-r58.

41.

Transcriptomic characterization of two major Fusarium resistance quantitative trait loci (QTLs), Fhb1 and Qfhs.ifa-5A, identifies novel candidate genes.

Schweiger W, Steiner B, Ametz C, Siegwart G, Wiesenberger G, Berthiller F, Lemmens M, Jia H, Adam G, Muehlbauer GJ, Kreil DP, Buerstmayr H.

Mol Plant Pathol. 2013 Oct;14(8):772-85. doi: 10.1111/mpp.12048. Epub 2013 Jun 6.

42.

Mendelian and non-Mendelian regulation of gene expression in maize.

Li L, Petsch K, Shimizu R, Liu S, Xu WW, Ying K, Yu J, Scanlon MJ, Schnable PS, Timmermans MC, Springer NM, Muehlbauer GJ.

PLoS Genet. 2013;9(1):e1003202. doi: 10.1371/journal.pgen.1003202. Epub 2013 Jan 17. Erratum in: PLoS Genet. 2018 Feb 14;14 (2):e1007234.

43.

Marker-trait associations in Virginia Tech winter barley identified using genome-wide mapping.

Berger GL, Liu S, Hall MD, Brooks WS, Chao S, Muehlbauer GJ, Baik BK, Steffenson B, Griffey CA.

Theor Appl Genet. 2013 Mar;126(3):693-710. doi: 10.1007/s00122-012-2011-7. Epub 2012 Nov 9.

PMID:
23139143
44.

Haplotype diversity and population structure in cultivated and wild barley evaluated for Fusarium head blight responses.

Huang Y, Millett BP, Beaubien KA, Dahl SK, Steffenson BJ, Smith KP, Muehlbauer GJ.

Theor Appl Genet. 2013 Mar;126(3):619-36. doi: 10.1007/s00122-012-2006-4. Epub 2012 Nov 3.

PMID:
23124391
45.

The barley UNICULM2 gene resides in a centromeric region and may be associated with signaling and stress responses.

Okagaki RJ, Cho S, Kruger WM, Xu WW, Heinen S, Muehlbauer GJ.

Funct Integr Genomics. 2013 Mar;13(1):33-41. doi: 10.1007/s10142-012-0299-7. Epub 2012 Oct 21.

PMID:
23086595
46.

A physical, genetic and functional sequence assembly of the barley genome.

International Barley Genome Sequencing Consortium, Mayer KF, Waugh R, Brown JW, Schulman A, Langridge P, Platzer M, Fincher GB, Muehlbauer GJ, Sato K, Close TJ, Wise RP, Stein N.

Nature. 2012 Nov 29;491(7426):711-6. doi: 10.1038/nature11543. Epub 2012 Oct 17.

47.

Transgenic Arabidopsis thaliana expressing a barley UDP-glucosyltransferase exhibit resistance to the mycotoxin deoxynivalenol.

Shin S, Torres-Acosta JA, Heinen SJ, McCormick S, Lemmens M, Paris MP, Berthiller F, Adam G, Muehlbauer GJ.

J Exp Bot. 2012 Aug;63(13):4731-40. doi: 10.1093/jxb/ers141.

48.

Ontogeny of the maize shoot apical meristem.

Takacs EM, Li J, Du C, Ponnala L, Janick-Buckner D, Yu J, Muehlbauer GJ, Schnable PS, Timmermans MC, Sun Q, Nettleton D, Scanlon MJ.

Plant Cell. 2012 Aug;24(8):3219-34. Epub 2012 Aug 21.

49.

Genic and nongenic contributions to natural variation of quantitative traits in maize.

Li X, Zhu C, Yeh CT, Wu W, Takacs EM, Petsch KA, Tian F, Bai G, Buckler ES, Muehlbauer GJ, Timmermans MC, Scanlon MJ, Schnable PS, Yu J.

Genome Res. 2012 Dec;22(12):2436-44. doi: 10.1101/gr.140277.112. Epub 2012 Jun 14.

50.

Brd1 gene in maize encodes a brassinosteroid C-6 oxidase.

Makarevitch I, Thompson A, Muehlbauer GJ, Springer NM.

PLoS One. 2012;7(1):e30798. doi: 10.1371/journal.pone.0030798. Epub 2012 Jan 26.

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