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Items: 1 to 50 of 255

1.

Development of a Relative Quantification Method for IR-MALDESI Mass Spectrometry Imaging of Arabidopsis Root Seedlings.

Bagley MC, Stepanova AN, Ekelöf M, Alonso JM, Muddiman DC.

Rapid Commun Mass Spectrom. 2019 Oct 28. doi: 10.1002/rcm.8616. [Epub ahead of print]

PMID:
31658400
2.

NIST Interlaboratory Study on Glycosylation Analysis of Monoclonal Antibodies: Comparison of Results from Diverse Analytical Methods.

De Leoz MLA, Duewer DL, Fung A, Liu L, Yau HK, Potter O, Staples GO, Furuki K, Frenkel R, Hu Y, Sosic Z, Zhang P, Altmann F, Gruber C, Shao C, Zaia J, Evers W, Pangelley S, Suckau D, Wiechmann A, Resemann A, Jabs W, Beck A, Froehlich JW, Huang C, Li Y, Liu Y, Sun S, Wang Y, Seo Y, An HJ, Reichardt NC, Ruiz JE, Archer-Hartmann S, Azadi P, Bell L, Lakos Z, An Y, Cipollo JF, Pučić-Baković M, Štambuk J, Lauc G, Li X, Wang PG, Bock A, Hennig R, Rapp E, Creskey M, Cyr T, Nakano M, Sugiyama T, Leung PA, Link-Lenczowski P, Jaworek J, Yang SJ, Zhang H, Kelly T, Klapoetke S, Cao R, Kim JY, Lee HK, Lee J, Yoo JS, Kim SR, Suh SK, de Haan N, Falck D, Lageveen-Kammeijer GSM, Wuhrer M, Emery RJ, Kozak RP, Liew LP, Royle L, Urbanowicz PA, Packer N, Song X, Everest-Dass A, Lattová E, Cajic S, Alagesan K, Kolarich D, Kasali T, Lindo V, Chen Y, Goswami K, Gau B, Amunugama R, Jones R, Stroop CJM, Kato K, Yagi H, Kondo S, Yuen CT, Harazono A, Shi X, Magnelli P, Kasper BT, Mahal LK, Harvey DJ, O'Flaherty RM, Rudd PM, Saldova R, Hecht ES, Muddiman DC, Kang J, Bhoskar P, Menard D, Saati A, Merle C, Mast S, Tep S, Truong J, Nishikaze T, Sekiya S, Shafer A, Funaoka S, Toyoda M, de Vreugd P, Caron C, Pradhan P, Tan NC, Mechref Y, Patil S, Rohrer JS, Chakrabarti R, Dadke D, Lahori M, Zou C, Cairo CW, Reiz B, Whittal RM, Lebrilla C, Wu LD, Guttman A, Szigeti M, Kremkow BG, Lee K, Sihlbom C, Adamczyk B, Jin C, Karlsson NG, Örnros J, Larson G, Nilsson J, Meyer B, Wiegandt A, Komatsu E, Perreault H, Bodnar ED, Said N, Francois YN, Leize-Wagner E, Maier S, Zeck A, Heck AJR, Yang Y, Haselberg R, Yu YQ, Alley W, Leone JW, Yuan H, Stein SE.

Mol Cell Proteomics. 2019 Oct 7. pii: mcp.RA119.001677. doi: 10.1074/mcp.RA119.001677. [Epub ahead of print]

3.

Internal Energy Deposition in Infrared Matrix-Assisted Laser Desorption Electrospray Ionization With and Without the Use of Ice as a Matrix.

Tu A, Muddiman DC.

J Am Soc Mass Spectrom. 2019 Nov;30(11):2380-2391. doi: 10.1007/s13361-019-02323-2. Epub 2019 Sep 9.

PMID:
31502226
4.

Quantitative proteomic analysis of tomato genotypes with differential cadmium tolerance.

Borges KLR, Salvato F, Loziuk PL, Muddiman DC, Azevedo RA.

Environ Sci Pollut Res Int. 2019 Sep;26(25):26039-26051. doi: 10.1007/s11356-019-05766-y. Epub 2019 Jul 5.

PMID:
31278641
5.

Heterogeneous antiretroviral drug distribution and HIV/SHIV detection in the gut of three species.

Thompson CG, Rosen EP, Prince HMA, White N, Sykes C, de la Cruz G, Mathews M, Deleage C, Estes JD, Charlins P, Mulder LR, Kovarova M, Adamson L, Arora S, Dellon ES, Peery AF, Shaheen NJ, Gay C, Muddiman DC, Akkina R, Garcia JV, Luciw P, Kashuba ADM.

Sci Transl Med. 2019 Jul 3;11(499). pii: eaap8758. doi: 10.1126/scitranslmed.aap8758.

PMID:
31270274
6.

Systematic evaluation of repeatability of IR-MALDESI-MS and normalization strategies for correcting the analytical variation and improving image quality.

Tu A, Muddiman DC.

Anal Bioanal Chem. 2019 Sep;411(22):5729-5743. doi: 10.1007/s00216-019-01953-5. Epub 2019 Jun 25.

PMID:
31240357
7.

Label-Free Quantitative Proteomics of Enriched Nuclei from Sugarcane (Saccharum ssp) Stems in Response to Drought Stress.

Salvato F, Loziuk P, Kiyota E, Daneluzzi GS, Araújo P, Muddiman DC, Mazzafera P.

Proteomics. 2019 Jul;19(14):e1900004. doi: 10.1002/pmic.201900004. Epub 2019 Jul 4.

PMID:
31172662
8.

Artemisinin Biosynthesis in Non-glandular Trichome Cells of Artemisia annua.

Judd R, Bagley MC, Li M, Zhu Y, Lei C, Yuzuak S, Ekelöf M, Pu G, Zhao X, Muddiman DC, Xie DY.

Mol Plant. 2019 May 6;12(5):704-714. doi: 10.1016/j.molp.2019.02.011. Epub 2019 Mar 6.

PMID:
30851440
9.

Discriminating normal regions within cancerous hen ovarian tissue using multivariate hyperspectral image analysis.

Akbari Lakeh M, Tu A, Muddiman DC, Abdollahi H.

Rapid Commun Mass Spectrom. 2019 Feb 28;33(4):381-391. doi: 10.1002/rcm.8362.

PMID:
30468547
10.

Evaluation of Digital Image Recognition Methods for Mass Spectrometry Imaging Data Analysis.

Ekelöf M, Garrard KP, Judd R, Rosen EP, Xie DY, Kashuba ADM, Muddiman DC.

J Am Soc Mass Spectrom. 2018 Dec;29(12):2467-2470. doi: 10.1007/s13361-018-2073-0. Epub 2018 Oct 15.

PMID:
30324263
11.

IR-MALDESI mass spectrometry imaging of underivatized neurotransmitters in brain tissue of rats exposed to tetrabromobisphenol A.

Bagley MC, Ekelöf M, Rock K, Patisaul H, Muddiman DC.

Anal Bioanal Chem. 2018 Dec;410(30):7979-7986. doi: 10.1007/s00216-018-1420-0. Epub 2018 Oct 13.

PMID:
30317443
12.

CAD1 and CCR2 protein complex formation in monolignol biosynthesis in Populus trichocarpa.

Yan X, Liu J, Kim H, Liu B, Huang X, Yang Z, Lin YJ, Chen H, Yang C, Wang JP, Muddiman DC, Ralph J, Sederoff RR, Li Q, Chiang VL.

New Phytol. 2019 Apr;222(1):244-260. doi: 10.1111/nph.15505. Epub 2018 Oct 27.

PMID:
30276825
13.

Discovery and quantification of bioactive peptides in fermented cucumber by direct analysis IR-MALDESI mass spectrometry and LC-QQQ-MS.

Fideler J, Johanningsmeier SD, Ekelöf M, Muddiman DC.

Food Chem. 2019 Jan 15;271:715-723. doi: 10.1016/j.foodchem.2018.07.187. Epub 2018 Jul 31.

PMID:
30236736
14.

Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis.

Wang JP, Matthews ML, Williams CM, Shi R, Yang C, Tunlaya-Anukit S, Chen HC, Li Q, Liu J, Lin CY, Naik P, Sun YH, Loziuk PL, Yeh TF, Kim H, Gjersing E, Shollenberger T, Shuford CM, Song J, Miller Z, Huang YY, Edmunds CW, Liu B, Sun Y, Lin YJ, Li W, Chen H, Peszlen I, Ducoste JJ, Ralph J, Chang HM, Muddiman DC, Davis MF, Smith C, Isik F, Sederoff R, Chiang VL.

Nat Commun. 2018 Apr 20;9(1):1579. doi: 10.1038/s41467-018-03863-z.

15.

Characterization of a novel miniaturized burst-mode infrared laser system for IR-MALDESI mass spectrometry imaging.

Ekelöf M, Manni J Sr, Nazari M, Bokhart M, Muddiman DC.

Anal Bioanal Chem. 2018 Mar;410(9):2395-2402. doi: 10.1007/s00216-018-0918-9. Epub 2018 Feb 17.

16.

A novel integrated strategy for the detection and quantification of the neurotoxin β-N-methylamino-L-alanine in environmental samples.

Beri J, Kirkwood KI, Muddiman DC, Bereman MS.

Anal Bioanal Chem. 2018 Apr;410(10):2597-2605. doi: 10.1007/s00216-018-0930-0. Epub 2018 Feb 17.

PMID:
29455280
17.
18.

Characterization of the Spectral Accuracy of an Orbitrap Mass Analyzer Using Isotope Ratio Mass Spectrometry.

Khodjaniyazova S, Nazari M, Garrard KP, Matos MPV, Jackson GP, Muddiman DC.

Anal Chem. 2018 Feb 6;90(3):1897-1906. doi: 10.1021/acs.analchem.7b03983. Epub 2018 Jan 11.

PMID:
29281785
19.

Demonstration of hydrazide tagging for O-glycans and a central composite design of experiments optimization using the INLIGHT™ reagent.

King SR, Hecht ES, Muddiman DC.

Anal Bioanal Chem. 2018 Feb;410(5):1409-1415. doi: 10.1007/s00216-017-0828-2. Epub 2017 Dec 26.

PMID:
29279989
20.

The scope of Analytical and Bioanalytical Chemistry (ABC).

Cui H, Garrigues P, Gauglitz G, Hilder E, Hopfgartner G, Muddiman DC, Roda A, Sanz-Medel A, Wise SA, Woolley AT, Zhang L.

Anal Bioanal Chem. 2018 Jan;410(3):649-650. doi: 10.1007/s00216-017-0743-6. No abstract available.

PMID:
29167931
21.

Comparative proteomic analysis between nitrogen supplemented and starved conditions in Magnaporthe oryzae.

Oh Y, Robertson SL, Parker J, Muddiman DC, Dean RA.

Proteome Sci. 2017 Nov 13;15:20. doi: 10.1186/s12953-017-0128-y. eCollection 2017.

22.

MSiReader v1.0: Evolving Open-Source Mass Spectrometry Imaging Software for Targeted and Untargeted Analyses.

Bokhart MT, Nazari M, Garrard KP, Muddiman DC.

J Am Soc Mass Spectrom. 2018 Jan;29(1):8-16. doi: 10.1007/s13361-017-1809-6. Epub 2017 Sep 20.

23.

IR-MALDESI method optimization based on time-resolved measurement of ion yields.

Ekelöf M, Muddiman DC.

Anal Bioanal Chem. 2018 Jan;410(3):963-970. doi: 10.1007/s00216-017-0585-2. Epub 2017 Aug 29.

PMID:
28852816
24.

Direct screening of enzyme activity using infrared matrix-assisted laser desorption electrospray ionization.

Nazari M, Ekelöf M, Khodjaniyazova S, Elsen NL, Williams JD, Muddiman DC.

Rapid Commun Mass Spectrom. 2017 Nov 30;31(22):1868-1874. doi: 10.1002/rcm.7971.

25.

Direct analysis of terpenes from biological buffer systems using SESI and IR-MALDESI.

Nazari M, Malico AA, Ekelöf M, Lund S, Williams GJ, Muddiman DC.

Anal Bioanal Chem. 2018 Jan;410(3):953-962. doi: 10.1007/s00216-017-0570-9. Epub 2017 Aug 17.

PMID:
28819677
26.

IR-MALDESI Mass Spectrometry Imaging at 50 Micron Spatial Resolution.

Bokhart MT, Manni J, Garrard KP, Ekelöf M, Nazari M, Muddiman DC.

J Am Soc Mass Spectrom. 2017 Oct;28(10):2099-2107. doi: 10.1007/s13361-017-1740-x. Epub 2017 Jul 18.

27.

Perfluorinated alcohol induced coacervates as extraction media for proteomic analysis.

McCord JP, Muddiman DC, Khaledi MG.

J Chromatogr A. 2017 Nov 10;1523:293-299. doi: 10.1016/j.chroma.2017.06.025. Epub 2017 Jun 12.

PMID:
28687241
28.

DRILL: An Electrospray Ionization-Mass Spectrometry Interface for Improved Sensitivity via Inertial Droplet Sorting and Electrohydrodynamic Focusing in a Swirling Flow.

Kottke PA, Lee JY, Jonke AP, Seneviratne CA, Hecht ES, Muddiman DC, Torres MP, Fedorov AG.

Anal Chem. 2017 Sep 5;89(17):8981-8987. doi: 10.1021/acs.analchem.7b01555. Epub 2017 Jun 29.

29.

The PeptideAtlas of the Domestic Laying Hen.

McCord J, Sun Z, Deutsch EW, Moritz RL, Muddiman DC.

J Proteome Res. 2017 Mar 3;16(3):1352-1363. doi: 10.1021/acs.jproteome.6b00952. Epub 2017 Feb 14.

30.

Xylose Migration During Tandem Mass Spectrometry of N-Linked Glycans.

Hecht ES, Loziuk PL, Muddiman DC.

J Am Soc Mass Spectrom. 2017 Apr;28(4):729-732. doi: 10.1007/s13361-016-1588-5. Epub 2017 Jan 26.

31.

Recent advances in glycomics, glycoproteomics and allied topics.

Mechref Y, Muddiman DC.

Anal Bioanal Chem. 2017 Jan;409(2):355-357. doi: 10.1007/s00216-016-0093-9. No abstract available.

PMID:
27933360
32.

Direct Analysis of Triterpenes from High-Salt Fermented Cucumbers Using Infrared Matrix-Assisted Laser Desorption Electrospray Ionization (IR-MALDESI).

Ekelöf M, McMurtrie EK, Nazari M, Johanningsmeier SD, Muddiman DC.

J Am Soc Mass Spectrom. 2017 Feb;28(2):370-375. doi: 10.1007/s13361-016-1541-7. Epub 2016 Nov 15.

PMID:
27848143
33.

Examining ubiquitinated peptide enrichment efficiency through an epitope labeled protein.

Parker J, Oh Y, Moazami Y, Pierce JG, Loziuk PL, Dean RA, Muddiman DC.

Anal Biochem. 2016 Nov 1;512:114-119. doi: 10.1016/j.ab.2016.08.017. Epub 2016 Aug 22.

PMID:
27562526
34.

Enhanced Lipidome Coverage in Shotgun Analyses by using Gas-Phase Fractionation.

Nazari M, Muddiman DC.

J Am Soc Mass Spectrom. 2016 Nov;27(11):1735-1744. Epub 2016 Aug 25.

35.

N-linked glycosite profiling and use of Skyline as a platform for characterization and relative quantification of glycans in differentiating xylem of Populus trichocarpa.

Loziuk PL, Hecht ES, Muddiman DC.

Anal Bioanal Chem. 2017 Jan;409(2):487-497. doi: 10.1007/s00216-016-9776-5. Epub 2016 Aug 4.

36.

Infrared matrix-assisted laser desorption electrospray ionization mass spectrometry imaging analysis of biospecimens.

Bokhart MT, Muddiman DC.

Analyst. 2016 Sep 21;141(18):5236-45. doi: 10.1039/c6an01189f. Epub 2016 Aug 3. Review.

37.

Identification of Epigenetic Factor Proteins Expressed in Human Embryonic Stem Cell-Derived Trophoblasts and in Human Placental Trophoblasts.

Sarkar P, Mischler A, Randall SM, Collier TS, Dorman KF, Boggess KA, Muddiman DC, Rao BM.

J Proteome Res. 2016 Aug 5;15(8):2433-44. doi: 10.1021/acs.jproteome.5b01118. Epub 2016 Jul 18.

PMID:
27378238
38.

Composition of Rosenthal Fibers, the Protein Aggregate Hallmark of Alexander Disease.

Heaven MR, Flint D, Randall SM, Sosunov AA, Wilson L, Barnes S, Goldman JE, Muddiman DC, Brenner M.

J Proteome Res. 2016 Jul 1;15(7):2265-82. doi: 10.1021/acs.jproteome.6b00316. Epub 2016 Jun 2.

39.

Whole-body Mass Spectrometry Imaging by Infrared Matrix-assisted Laser Desorption Electrospray Ionization (IR-MALDESI).

Nazari M, Bokhart MT, Muddiman DC.

J Vis Exp. 2016 Mar 24;(109):e53942. doi: 10.3791/53942.

40.

A Quantitative Glycomics and Proteomics Combined Purification Strategy.

Hecht ES, McCord JP, Muddiman DC.

J Vis Exp. 2016 Mar 8;(109). doi: 10.3791/53735.

41.

Optimizing Mass Spectrometry Analyses: A Tailored Review on the Utility of Design of Experiments.

Hecht ES, Oberg AL, Muddiman DC.

J Am Soc Mass Spectrom. 2016 May;27(5):767-85. doi: 10.1007/s13361-016-1344-x. Epub 2016 Mar 7. Review.

42.

TransOmic analysis of forebrain sections in Sp2 conditional knockout embryonic mice using IR-MALDESI imaging of lipids and LC-MS/MS label-free proteomics.

Loziuk P, Meier F, Johnson C, Ghashghaei HT, Muddiman DC.

Anal Bioanal Chem. 2016 May;408(13):3453-74. doi: 10.1007/s00216-016-9421-3. Epub 2016 Mar 4.

43.

Wall modified photonic crystal fibre capillaries as porous layer open tubular columns for in-capillary micro-extraction and capillary chromatography.

Kazarian AA, Sanz Rodriguez E, Deverell JA, McCord J, Muddiman DC, Paull B.

Anal Chim Acta. 2016 Jan 28;905:1-7. doi: 10.1016/j.aca.2015.10.005. Epub 2015 Oct 21.

PMID:
26755132
44.

Analysis of Antiretrovirals in Single Hair Strands for Evaluation of Drug Adherence with Infrared-Matrix-Assisted Laser Desorption Electrospray Ionization Mass Spectrometry Imaging.

Rosen EP, Thompson CG, Bokhart MT, Prince HM, Sykes C, Muddiman DC, Kashuba AD.

Anal Chem. 2016 Jan 19;88(2):1336-44. doi: 10.1021/acs.analchem.5b03794. Epub 2015 Dec 30.

45.

What if you could only publish 50 papers your entire career?

Muddiman DC.

Anal Bioanal Chem. 2016 Jan;408(3):663-4. doi: 10.1007/s00216-015-9208-y. No abstract available.

PMID:
26677017
46.

Mechanisms of Egg Yolk Formation and Implications on Early Life History of White Perch (Morone americana).

Schilling J, Loziuk PL, Muddiman DC, Daniels HV, Reading BJ.

PLoS One. 2015 Nov 18;10(11):e0143225. doi: 10.1371/journal.pone.0143225. eCollection 2015.

47.

Influence of C-Trap Ion Accumulation Time on the Detectability of Analytes in IR-MALDESI MSI.

Rosen EP, Bokhart MT, Nazari M, Muddiman DC.

Anal Chem. 2015 Oct 20;87(20):10483-90. doi: 10.1021/acs.analchem.5b02641. Epub 2015 Oct 6.

49.

Relative Quantification and Higher-Order Modeling of the Plasma Glycan Cancer Burden Ratio in Ovarian Cancer Case-Control Samples.

Hecht ES, Scholl EH, Walker SH, Taylor AD, Cliby WA, Motsinger-Reif AA, Muddiman DC.

J Proteome Res. 2015 Oct 2;14(10):4394-401. doi: 10.1021/acs.jproteome.5b00703. Epub 2015 Sep 14.

50.

Elucidation of Xylem-Specific Transcription Factors and Absolute Quantification of Enzymes Regulating Cellulose Biosynthesis in Populus trichocarpa.

Loziuk PL, Parker J, Li W, Lin CY, Wang JP, Li Q, Sederoff RR, Chiang VL, Muddiman DC.

J Proteome Res. 2015 Oct 2;14(10):4158-68. doi: 10.1021/acs.jproteome.5b00233. Epub 2015 Sep 1.

PMID:
26325666

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