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Items: 40

1.

Recent Advances in the Transcriptional Regulation of Secondary Cell Wall Biosynthesis in the Woody Plants.

Zhang J, Xie M, Tuskan GA, Muchero W, Chen JG.

Front Plant Sci. 2018 Oct 23;9:1535. doi: 10.3389/fpls.2018.01535. eCollection 2018. Review.

2.

Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant-pathogen interactions in a tree.

Muchero W, Sondreli KL, Chen JG, Urbanowicz BR, Zhang J, Singan V, Yang Y, Brueggeman RS, Franco-Coronado J, Abraham N, Yang JY, Moremen KW, Weisberg AJ, Chang JH, Lindquist E, Barry K, Ranjan P, Jawdy S, Schmutz J, Tuskan GA, LeBoldus JM.

Proc Natl Acad Sci U S A. 2018 Nov 6;115(45):11573-11578. doi: 10.1073/pnas.1804428115. Epub 2018 Oct 18.

3.

Regulation of Lignin Biosynthesis and Its Role in Growth-Defense Tradeoffs.

Xie M, Zhang J, Tschaplinski TJ, Tuskan GA, Chen JG, Muchero W.

Front Plant Sci. 2018 Sep 28;9:1427. doi: 10.3389/fpls.2018.01427. eCollection 2018. Review.

4.

Defining the genetic components of callus formation: A GWAS approach.

Tuskan GA, Mewalal R, Gunter LE, Palla KJ, Carter K, Jacobson DA, Jones PC, Garcia BJ, Weighill DA, Hyatt PD, Yang Y, Zhang J, Reis N, Chen JG, Muchero W.

PLoS One. 2018 Aug 17;13(8):e0202519. doi: 10.1371/journal.pone.0202519. eCollection 2018.

5.

Genome-wide association studies and expression-based quantitative trait loci analyses reveal roles of HCT2 in caffeoylquinic acid biosynthesis and its regulation by defense-responsive transcription factors in Populus.

Zhang J, Yang Y, Zheng K, Xie M, Feng K, Jawdy SS, Gunter LE, Ranjan P, Singan VR, Engle N, Lindquist E, Barry K, Schmutz J, Zhao N, Tschaplinski TJ, LeBoldus J, Tuskan GA, Chen JG, Muchero W.

New Phytol. 2018 Oct;220(2):502-516. doi: 10.1111/nph.15297. Epub 2018 Jul 11.

PMID:
29992670
6.

A 5-Enolpyruvylshikimate 3-Phosphate Synthase Functions as a Transcriptional Repressor in Populus.

Xie M, Muchero W, Bryan AC, Yee K, Guo HB, Zhang J, Tschaplinski TJ, Singan VR, Lindquist E, Payyavula RS, Barros-Rios J, Dixon R, Engle N, Sykes RW, Davis M, Jawdy SS, Gunter LE, Thompson O, DiFazio SP, Evans LM, Winkeler K, Collins C, Schmutz J, Guo H, Kalluri U, Rodriguez M, Feng K, Chen JG, Tuskan GA.

Plant Cell. 2018 Jul;30(7):1645-1660. doi: 10.1105/tpc.18.00168. Epub 2018 Jun 11.

7.

A Variable Polyglutamine Repeat Affects Subcellular Localization and Regulatory Activity of a Populus ANGUSTIFOLIA Protein.

Bryan AC, Zhang J, Guo J, Ranjan P, Singan V, Barry K, Schmutz J, Weighill D, Jacobson D, Jawdy S, Tuskan GA, Chen JG, Muchero W.

G3 (Bethesda). 2018 Jul 31;8(8):2631-2641. doi: 10.1534/g3.118.200188.

8.

Understanding the influences of different pretreatments on recalcitrance of Populus natural variants.

Yao L, Yang H, Yoo CG, Pu Y, Meng X, Muchero W, Tuskan GA, Tschaplinski T, Ragauskas AJ.

Bioresour Technol. 2018 Oct;265:75-81. doi: 10.1016/j.biortech.2018.05.057. Epub 2018 May 18.

PMID:
29883849
9.

The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution.

Lang D, Ullrich KK, Murat F, Fuchs J, Jenkins J, Haas FB, Piednoel M, Gundlach H, Van Bel M, Meyberg R, Vives C, Morata J, Symeonidi A, Hiss M, Muchero W, Kamisugi Y, Saleh O, Blanc G, Decker EL, van Gessel N, Grimwood J, Hayes RD, Graham SW, Gunter LE, McDaniel SF, Hoernstein SNW, Larsson A, Li FW, Perroud PF, Phillips J, Ranjan P, Rokshar DS, Rothfels CJ, Schneider L, Shu S, Stevenson DW, Thümmler F, Tillich M, Villarreal Aguilar JC, Widiez T, Wong GK, Wymore A, Zhang Y, Zimmer AD, Quatrano RS, Mayer KFX, Goodstein D, Casacuberta JM, Vandepoele K, Reski R, Cuming AC, Tuskan GA, Maumus F, Salse J, Schmutz J, Rensing SA.

Plant J. 2018 Feb;93(3):515-533. doi: 10.1111/tpj.13801.

PMID:
29237241
10.

Agronomic performance of Populus deltoides trees engineered for biofuel production.

Macaya-Sanz D, Chen JG, Kalluri UC, Muchero W, Tschaplinski TJ, Gunter LE, Simon SJ, Biswal AK, Bryan AC, Payyavula R, Xie M, Yang Y, Zhang J, Mohnen D, Tuskan GA, DiFazio SP.

Biotechnol Biofuels. 2017 Nov 30;10:253. doi: 10.1186/s13068-017-0934-6. eCollection 2017.

11.

The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism.

Yang X, Hu R, Yin H, Jenkins J, Shu S, Tang H, Liu D, Weighill DA, Cheol Yim W, Ha J, Heyduk K, Goodstein DM, Guo HB, Moseley RC, Fitzek E, Jawdy S, Zhang Z, Xie M, Hartwell J, Grimwood J, Abraham PE, Mewalal R, Beltrán JD, Boxall SF, Dever LV, Palla KJ, Albion R, Garcia T, Mayer JA, Don Lim S, Man Wai C, Peluso P, Van Buren R, De Paoli HC, Borland AM, Guo H, Chen JG, Muchero W, Yin Y, Jacobson DA, Tschaplinski TJ, Hettich RL, Ming R, Winter K, Leebens-Mack JH, Smith JAC, Cushman JC, Schmutz J, Tuskan GA.

Nat Commun. 2017 Dec 1;8(1):1899. doi: 10.1038/s41467-017-01491-7.

12.

Quantitative trait locus mapping of Populus bark features and stem diameter.

Bdeir R, Muchero W, Yordanov Y, Tuskan GA, Busov V, Gailing O.

BMC Plant Biol. 2017 Nov 28;17(1):224. doi: 10.1186/s12870-017-1166-4.

13.

The Sphagnome Project: enabling ecological and evolutionary insights through a genus-level sequencing project.

Weston DJ, Turetsky MR, Johnson MG, Granath G, Lindo Z, Belyea LR, Rice SK, Hanson DT, Engelhardt KAM, Schmutz J, Dorrepaal E, Euskirchen ES, Stenøien HK, Szövényi P, Jackson M, Piatkowski BT, Muchero W, Norby RJ, Kostka JE, Glass JB, Rydin H, Limpens J, Tuittila ES, Ullrich KK, Carrell A, Benscoter BW, Chen JG, Oke TA, Nilsson MB, Ranjan P, Jacobson D, Lilleskov EA, Clymo RS, Shaw AJ.

New Phytol. 2018 Jan;217(1):16-25. doi: 10.1111/nph.14860. Epub 2017 Oct 27.

PMID:
29076547
14.

An In-Depth Understanding of Biomass Recalcitrance Using Natural Poplar Variants as the Feedstock.

Meng X, Pu Y, Yoo CG, Li M, Bali G, Park DY, Gjersing E, Davis MF, Muchero W, Tuskan GA, Tschaplinski TJ, Ragauskas AJ.

ChemSusChem. 2017 Jan 10;10(1):139-150. doi: 10.1002/cssc.201601303. Epub 2016 Dec 12.

PMID:
27882723
15.

Genome-wide analysis of lectin receptor-like kinases in Populus.

Yang Y, Labbé J, Muchero W, Yang X, Jawdy SS, Kennedy M, Johnson J, Sreedasyam A, Schmutz J, Tuskan GA, Chen JG.

BMC Genomics. 2016 Sep 1;17:699. doi: 10.1186/s12864-016-3026-2.

16.

Natural genetic variability reduces recalcitrance in poplar.

Bhagia S, Muchero W, Kumar R, Tuskan GA, Wyman CE.

Biotechnol Biofuels. 2016 May 20;9:106. doi: 10.1186/s13068-016-0521-2. eCollection 2016.

17.

Genetic Analysis of Physcomitrella patens Identifies ABSCISIC ACID NON-RESPONSIVE, a Regulator of ABA Responses Unique to Basal Land Plants and Required for Desiccation Tolerance.

Stevenson SR, Kamisugi Y, Trinh CH, Schmutz J, Jenkins JW, Grimwood J, Muchero W, Tuskan GA, Rensing SA, Lang D, Reski R, Melkonian M, Rothfels CJ, Li FW, Larsson A, Wong GK, Edwards TA, Cuming AC.

Plant Cell. 2016 Jun;28(6):1310-27. doi: 10.1105/tpc.16.00091. Epub 2016 May 18.

18.

Knockdown of a laccase in Populus deltoides confers altered cell wall chemistry and increased sugar release.

Bryan AC, Jawdy S, Gunter L, Gjersing E, Sykes R, Hinchee MA, Winkeler KA, Collins CM, Engle N, Tschaplinski TJ, Yang X, Tuskan GA, Muchero W, Chen JG.

Plant Biotechnol J. 2016 Oct;14(10):2010-20. doi: 10.1111/pbi.12560. Epub 2016 Apr 15.

19.

Characterization of DWARF14 Genes in Populus.

Zheng K, Wang X, Weighill DA, Guo HB, Xie M, Yang Y, Yang J, Wang S, Jacobson DA, Guo H, Muchero W, Tuskan GA, Chen JG.

Sci Rep. 2016 Feb 15;6:21593. doi: 10.1038/srep21593.

20.

Consolidated bioprocessing of Populus using Clostridium (Ruminiclostridium) thermocellum: a case study on the impact of lignin composition and structure.

Dumitrache A, Akinosho H, Rodriguez M Jr, Meng X, Yoo CG, Natzke J, Engle NL, Sykes RW, Tschaplinski TJ, Muchero W, Ragauskas AJ, Davison BH, Brown SD.

Biotechnol Biofuels. 2016 Feb 4;9:31. doi: 10.1186/s13068-016-0445-x. eCollection 2016.

21.

High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus.

Muchero W, Guo J, DiFazio SP, Chen JG, Ranjan P, Slavov GT, Gunter LE, Jawdy S, Bryan AC, Sykes R, Ziebell A, Klápště J, Porth I, Skyba O, Unda F, El-Kassaby YA, Douglas CJ, Mansfield SD, Martin J, Schackwitz W, Evans LM, Czarnecki O, Tuskan GA.

BMC Genomics. 2015 Jan 23;16:24. doi: 10.1186/s12864-015-1215-z.

22.

Sphagnum physiology in the context of changing climate: emergent influences of genomics, modelling and host-microbiome interactions on understanding ecosystem function.

Weston DJ, Timm CM, Walker AP, Gu L, Muchero W, Schmutz J, Shaw AJ, Tuskan GA, Warren JM, Wullschleger SD.

Plant Cell Environ. 2015 Sep;38(9):1737-51. doi: 10.1111/pce.12458. Epub 2014 Dec 7. Review.

23.

Population genomics of Populus trichocarpa identifies signatures of selection and adaptive trait associations.

Evans LM, Slavov GT, Rodgers-Melnick E, Martin J, Ranjan P, Muchero W, Brunner AM, Schackwitz W, Gunter L, Chen JG, Tuskan GA, DiFazio SP.

Nat Genet. 2014 Oct;46(10):1089-96. doi: 10.1038/ng.3075. Epub 2014 Aug 24.

PMID:
25151358
24.

Characterization of MORE AXILLARY GROWTH genes in Populus.

Czarnecki O, Yang J, Wang X, Wang S, Muchero W, Tuskan GA, Chen JG.

PLoS One. 2014 Jul 18;9(7):e102757. doi: 10.1371/journal.pone.0102757. eCollection 2014.

25.

Genome-wide association implicates numerous genes underlying ecological trait variation in natural populations of Populus trichocarpa.

McKown AD, Klápště J, Guy RD, Geraldes A, Porth I, Hannemann J, Friedmann M, Muchero W, Tuskan GA, Ehlting J, Cronk QC, El-Kassaby YA, Mansfield SD, Douglas CJ.

New Phytol. 2014 Jul;203(2):535-53. doi: 10.1111/nph.12815. Epub 2014 Apr 22.

26.

A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees.

Shakya M, Gottel N, Castro H, Yang ZK, Gunter L, Labbé J, Muchero W, Bonito G, Vilgalys R, Tuskan G, Podar M, Schadt CW.

PLoS One. 2013 Oct 16;8(10):e76382. doi: 10.1371/journal.pone.0076382. eCollection 2013.

27.

Genetic architecture of delayed senescence, biomass, and grain yield under drought stress in cowpea.

Muchero W, Roberts PA, Diop NN, Drabo I, Cisse N, Close TJ, Muranaka S, Boukar O, Ehlers JD.

PLoS One. 2013 Jul 30;8(7):e70041. doi: 10.1371/journal.pone.0070041. Print 2013.

28.

Analysis of cell division and cell elongation in the hypocotyls of Arabidopsis heterotrimeric G protein mutants.

Jin Z, Muchero W, Chen JG.

Methods Mol Biol. 2013;1043:37-43. doi: 10.1007/978-1-62703-532-3_4.

PMID:
23913033
29.

Genome-wide association mapping for wood characteristics in Populus identifies an array of candidate single nucleotide polymorphisms.

Porth I, Klapšte J, Skyba O, Hannemann J, McKown AD, Guy RD, DiFazio SP, Muchero W, Ranjan P, Tuskan GA, Friedmann MC, Ehlting J, Cronk QC, El-Kassaby YA, Douglas CJ, Mansfield SD.

New Phytol. 2013 Nov;200(3):710-26. doi: 10.1111/nph.12422. Epub 2013 Jul 26.

30.

Genome anchored QTLs for biomass productivity in hybrid Populus grown under contrasting environments.

Muchero W, Sewell MM, Ranjan P, Gunter LE, Tschaplinski TJ, Yin T, Tuskan GA.

PLoS One. 2013;8(1):e54468. doi: 10.1371/journal.pone.0054468. Epub 2013 Jan 29.

31.

A 34K SNP genotyping array for Populus trichocarpa: design, application to the study of natural populations and transferability to other Populus species.

Geraldes A, Difazio SP, Slavov GT, Ranjan P, Muchero W, Hannemann J, Gunter LE, Wymore AM, Grassa CJ, Farzaneh N, Porth I, McKown AD, Skyba O, Li E, Fujita M, Klápště J, Martin J, Schackwitz W, Pennacchio C, Rokhsar D, Friedmann MC, Wasteneys GO, Guy RD, El-Kassaby YA, Mansfield SD, Cronk QC, Ehlting J, Douglas CJ, Tuskan GA.

Mol Ecol Resour. 2013 Mar;13(2):306-23. doi: 10.1111/1755-0998.12056. Epub 2013 Jan 11.

PMID:
23311503
32.

Populus trichocarpa cell wall chemistry and ultrastructure trait variation, genetic control and genetic correlations.

Porth I, Klápště J, Skyba O, Lai BS, Geraldes A, Muchero W, Tuskan GA, Douglas CJ, El-Kassaby YA, Mansfield SD.

New Phytol. 2013 Feb;197(3):777-90. doi: 10.1111/nph.12014. Epub 2012 Dec 20.

33.

Highly efficient isolation of Populus mesophyll protoplasts and its application in transient expression assays.

Guo J, Morrell-Falvey JL, Labbé JL, Muchero W, Kalluri UC, Tuskan GA, Chen JG.

PLoS One. 2012;7(9):e44908. doi: 10.1371/journal.pone.0044908. Epub 2012 Sep 13.

34.

Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa.

Slavov GT, DiFazio SP, Martin J, Schackwitz W, Muchero W, Rodgers-Melnick E, Lipphardt MF, Pennacchio CP, Hellsten U, Pennacchio LA, Gunter LE, Ranjan P, Vining K, Pomraning KR, Wilhelm LJ, Pellegrini M, Mockler TC, Freitag M, Geraldes A, El-Kassaby YA, Mansfield SD, Cronk QC, Douglas CJ, Strauss SH, Rokhsar D, Tuskan GA.

New Phytol. 2012 Nov;196(3):713-25. doi: 10.1111/j.1469-8137.2012.04258.x. Epub 2012 Aug 3.

35.

Identification of quantitative trait loci and candidate genes for cadmium tolerance in Populus.

Induri BR, Ellis DR, Slavov GT, Yin T, Zhang X, Muchero W, Tuskan GA, DiFazio SP.

Tree Physiol. 2012 May;32(5):626-38. doi: 10.1093/treephys/tps032. Epub 2012 Apr 21.

PMID:
22522179
36.
38.

Restriction site polymorphism-based candidate gene mapping for seedling drought tolerance in cowpea [Vigna unguiculata (L.) Walp.].

Muchero W, Ehlers JD, Roberts PA.

Theor Appl Genet. 2010 Feb;120(3):509-18. doi: 10.1007/s00122-009-1171-6. Epub 2009 Oct 16.

39.

A consensus genetic map of cowpea [Vigna unguiculata (L) Walp.] and synteny based on EST-derived SNPs.

Muchero W, Diop NN, Bhat PR, Fenton RD, Wanamaker S, Pottorff M, Hearne S, Cisse N, Fatokun C, Ehlers JD, Roberts PA, Close TJ.

Proc Natl Acad Sci U S A. 2009 Oct 27;106(43):18159-64. doi: 10.1073/pnas.0905886106. Epub 2009 Oct 13.

40.

Mapping QTL for drought stress-induced premature senescence and maturity in cowpea [Vigna unguiculata (L.) Walp.].

Muchero W, Ehlers JD, Close TJ, Roberts PA.

Theor Appl Genet. 2009 Mar;118(5):849-63. doi: 10.1007/s00122-008-0944-7. Epub 2009 Jan 8.

PMID:
19130034

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