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Items: 9

1.

LongISLND: in silico sequencing of lengthy and noisy datatypes.

Lau B, Mohiyuddin M, Mu JC, Fang LT, Bani Asadi N, Dallett C, Lam HY.

Bioinformatics. 2016 Dec 15;32(24):3829-3832. Epub 2016 Sep 25.

2.

Computational Aspects of Optional PĆ³lya Tree.

Jiang H, Mu JC, Yang K, Du C, Lu L, Wong WH.

J Comput Graph Stat. 2016;25(1):301-320. Epub 2016 Mar 9.

3.

Leveraging long read sequencing from a single individual to provide a comprehensive resource for benchmarking variant calling methods.

Mu JC, Tootoonchi Afshar P, Mohiyuddin M, Chen X, Li J, Bani Asadi N, Gerstein MB, Wong WH, Lam HY.

Sci Rep. 2015 Sep 28;5:14493. doi: 10.1038/srep14493.

4.

An ensemble approach to accurately detect somatic mutations using SomaticSeq.

Fang LT, Afshar PT, Chhibber A, Mohiyuddin M, Fan Y, Mu JC, Gibeling G, Barr S, Asadi NB, Gerstein MB, Koboldt DC, Wang W, Wong WH, Lam HY.

Genome Biol. 2015 Sep 17;16:197. doi: 10.1186/s13059-015-0758-2.

5.

MetaSV: an accurate and integrative structural-variant caller for next generation sequencing.

Mohiyuddin M, Mu JC, Li J, Bani Asadi N, Gerstein MB, Abyzov A, Wong WH, Lam HY.

Bioinformatics. 2015 Aug 15;31(16):2741-4. doi: 10.1093/bioinformatics/btv204. Epub 2015 Apr 10.

6.

VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications.

Mu JC, Mohiyuddin M, Li J, Bani Asadi N, Gerstein MB, Abyzov A, Wong WH, Lam HY.

Bioinformatics. 2015 May 1;31(9):1469-71. doi: 10.1093/bioinformatics/btu828. Epub 2014 Dec 17.

7.

Exploring the physiologic role of human gastroesophageal reflux by analyzing time-series data from 24-h gastric and esophageal pH recordings.

Lu L, Mu JC, Sloan S, Miner PB, Gardner JD.

Physiol Rep. 2014 Jul 16;2(7). pii: e12051. doi: 10.14814/phy2.12051.

8.

Fast and accurate read alignment for resequencing.

Mu JC, Jiang H, Kiani A, Mohiyuddin M, Bani Asadi N, Wong WH.

Bioinformatics. 2012 Sep 15;28(18):2366-73. doi: 10.1093/bioinformatics/bts450. Epub 2012 Jul 18.

9.

Mutation of a U2 snRNA gene causes global disruption of alternative splicing and neurodegeneration.

Jia Y, Mu JC, Ackerman SL.

Cell. 2012 Jan 20;148(1-2):296-308. doi: 10.1016/j.cell.2011.11.057.

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