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Items: 19

1.

Identification of QTL controlling domestication-related traits in cowpea (Vigna unguiculata L. Walp).

Lo S, Muñoz-Amatriaín M, Boukar O, Herniter I, Cisse N, Guo YN, Roberts PA, Xu S, Fatokun C, Close TJ.

Sci Rep. 2018 Apr 19;8(1):6261. doi: 10.1038/s41598-018-24349-4.

2.

A multi-parent advanced generation inter-cross (MAGIC) population for genetic analysis and improvement of cowpea (Vigna unguiculata L. Walp.).

Huynh BL, Ehlers JD, Huang BE, Muñoz-Amatriaín M, Lonardi S, Santos JRP, Ndeve A, Batieno BJ, Boukar O, Cisse N, Drabo I, Fatokun C, Kusi F, Agyare RY, Guo YN, Herniter I, Lo S, Wanamaker SI, Xu S, Close TJ, Roberts PA.

Plant J. 2018 Mar;93(6):1129-1142. doi: 10.1111/tpj.13827. Epub 2018 Feb 24.

PMID:
29356213
3.

Genetic diversity and structure of Iberian Peninsula cowpeas compared to world-wide cowpea accessions using high density SNP markers.

Carvalho M, Muñoz-Amatriaín M, Castro I, Lino-Neto T, Matos M, Egea-Cortines M, Rosa E, Close T, Carnide V.

BMC Genomics. 2017 Nov 21;18(1):891. doi: 10.1186/s12864-017-4295-0.

4.

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.

Beier S, Himmelbach A, Colmsee C, Zhang XQ, Barrero RA, Zhang Q, Li L, Bayer M, Bolser D, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Sampath D, Heavens D, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke JK, Tan C, Wang S, Yin S, Zhou G, Poland JA, Bellgard MI, Houben A, Doležel J, Ayling S, Lonardi S, Langridge P, Muehlbauer GJ, Kersey P, Clark MD, Caccamo M, Schulman AH, Platzer M, Close TJ, Hansson M, Zhang G, Braumann I, Li C, Waugh R, Scholz U, Stein N, Mascher M.

Sci Data. 2017 Apr 27;4:170044. doi: 10.1038/sdata.2017.44.

5.

A chromosome conformation capture ordered sequence of the barley genome.

Mascher M, Gundlach H, Himmelbach A, Beier S, Twardziok SO, Wicker T, Radchuk V, Dockter C, Hedley PE, Russell J, Bayer M, Ramsay L, Liu H, Haberer G, Zhang XQ, Zhang Q, Barrero RA, Li L, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Bolser D, Colmsee C, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Chailyan A, Sampath D, Heavens D, Clissold L, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke JK, Tan C, Wang P, Wang S, Yin S, Zhou G, Poland JA, Bellgard MI, Borisjuk L, Houben A, Doležel J, Ayling S, Lonardi S, Kersey P, Langridge P, Muehlbauer GJ, Clark MD, Caccamo M, Schulman AH, Mayer KFX, Platzer M, Close TJ, Scholz U, Hansson M, Zhang G, Braumann I, Spannagl M, Li C, Waugh R, Stein N.

Nature. 2017 Apr 26;544(7651):427-433. doi: 10.1038/nature22043.

PMID:
28447635
6.

Genome resources for climate-resilient cowpea, an essential crop for food security.

Muñoz-Amatriaín M, Mirebrahim H, Xu P, Wanamaker SI, Luo M, Alhakami H, Alpert M, Atokple I, Batieno BJ, Boukar O, Bozdag S, Cisse N, Drabo I, Ehlers JD, Farmer A, Fatokun C, Gu YQ, Guo YN, Huynh BL, Jackson SA, Kusi F, Lawley CT, Lucas MR, Ma Y, Timko MP, Wu J, You F, Barkley NA, Roberts PA, Lonardi S, Close TJ.

Plant J. 2017 Mar;89(5):1042-1054. doi: 10.1111/tpj.13404. Epub 2017 Feb 3.

7.

Genomic regions, cellular components and gene regulatory basis underlying pod length variations in cowpea (V. unguiculata L. Walp).

Xu P, Wu X, Muñoz-Amatriaín M, Wang B, Wu X, Hu Y, Huynh BL, Close TJ, Roberts PA, Zhou W, Lu Z, Li G.

Plant Biotechnol J. 2017 May;15(5):547-557. doi: 10.1111/pbi.12639. Epub 2016 Oct 17.

8.

Fine mapping of barley locus Rps6 conferring resistance to wheat stripe rust.

Li K, Hegarty J, Zhang C, Wan A, Wu J, Guedira GB, Chen X, Muñoz-Amatriaín M, Fu D, Dubcovsky J.

Theor Appl Genet. 2016 Apr;129(4):845-859. doi: 10.1007/s00122-015-2663-1. Epub 2016 Feb 13.

9.

The Relationships between Development and Low Temperature Tolerance in Barley Near Isogenic Lines Differing for Flowering Behavior.

Cuesta-Marcos A, Muñoz-Amatriaín M, Filichkin T, Karsai I, Trevaskis B, Yasuda S, Hayes P, Sato K.

Plant Cell Physiol. 2015 Dec;56(12):2312-24. doi: 10.1093/pcp/pcv147. Epub 2015 Oct 6.

PMID:
26443377
10.

Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome.

Muñoz-Amatriaín M, Lonardi S, Luo M, Madishetty K, Svensson JT, Moscou MJ, Wanamaker S, Jiang T, Kleinhofs A, Muehlbauer GJ, Wise RP, Stein N, Ma Y, Rodriguez E, Kudrna D, Bhat PR, Chao S, Condamine P, Heinen S, Resnik J, Wing R, Witt HN, Alpert M, Beccuti M, Bozdag S, Cordero F, Mirebrahim H, Ounit R, Wu Y, You F, Zheng J, Simková H, Dolezel J, Grimwood J, Schmutz J, Duma D, Altschmied L, Blake T, Bregitzer P, Cooper L, Dilbirligi M, Falk A, Feiz L, Graner A, Gustafson P, Hayes PM, Lemaux P, Mammadov J, Close TJ.

Plant J. 2015 Oct;84(1):216-27. doi: 10.1111/tpj.12959. Epub 2015 Sep 21.

11.

The USDA barley core collection: genetic diversity, population structure, and potential for genome-wide association studies.

Muñoz-Amatriaín M, Cuesta-Marcos A, Endelman JB, Comadran J, Bonman JM, Bockelman HE, Chao S, Russell J, Waugh R, Hayes PM, Muehlbauer GJ.

PLoS One. 2014 Apr 14;9(4):e94688. doi: 10.1371/journal.pone.0094688. eCollection 2014.

12.

Barley genetic variation: implications for crop improvement.

Muñoz-Amatriaín M, Cuesta-Marcos A, Hayes PM, Muehlbauer GJ.

Brief Funct Genomics. 2014 Jul;13(4):341-50. doi: 10.1093/bfgp/elu006. Epub 2014 Mar 22.

PMID:
24658880
13.

Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).

Mascher M, Muehlbauer GJ, Rokhsar DS, Chapman J, Schmutz J, Barry K, Muñoz-Amatriaín M, Close TJ, Wise RP, Schulman AH, Himmelbach A, Mayer KF, Scholz U, Poland JA, Stein N, Waugh R.

Plant J. 2013 Nov;76(4):718-27. doi: 10.1111/tpj.12319. Epub 2013 Oct 10.

14.

The detection of QTLs in barley associated with endosperm hardness, grain density, grain size and malting quality using rapid phenotyping tools.

Walker CK, Ford R, Muñoz-Amatriaín M, Panozzo JF.

Theor Appl Genet. 2013 Oct;126(10):2533-51. doi: 10.1007/s00122-013-2153-2. Epub 2013 Jul 25.

PMID:
23884598
15.

Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome.

Muñoz-Amatriaín M, Eichten SR, Wicker T, Richmond TA, Mascher M, Steuernagel B, Scholz U, Ariyadasa R, Spannagl M, Nussbaumer T, Mayer KF, Taudien S, Platzer M, Jeddeloh JA, Springer NM, Muehlbauer GJ, Stein N.

Genome Biol. 2013 Jun 12;14(6):R58. doi: 10.1186/gb-2013-14-6-r58.

16.

Single nucleotide polymorphism mapping and alignment of recombinant chromosome substitution lines in barley.

Sato K, Close TJ, Bhat P, Muñoz-Amatriaín M, Muehlbauer GJ.

Plant Cell Physiol. 2011 May;52(5):728-37. doi: 10.1093/pcp/pcr024. Epub 2011 Mar 21.

PMID:
21427110
17.

Transcriptome analysis of a barley breeding program examines gene expression diversity and reveals target genes for malting quality improvement.

Muñoz-Amatriaín M, Xiong Y, Schmitt MR, Bilgic H, Budde AD, Chao S, Smith KP, Muehlbauer GJ.

BMC Genomics. 2010 Nov 23;11:653. doi: 10.1186/1471-2164-11-653.

18.

Structural and functional characterization of a winter malting barley.

Muñoz-Amatriaín M, Cistué L, Xiong Y, Bilgic H, Budde AD, Schmitt MR, Smith KP, Hayes PM, Muehlbauer GJ.

Theor Appl Genet. 2010 Mar;120(5):971-84. doi: 10.1007/s00122-009-1225-9. Epub 2009 Dec 4.

PMID:
19960335
19.

Microspore embryogenesis: assignment of genes to embryo formation and green vs. albino plant production.

Muñoz-Amatriaín M, Svensson JT, Castillo AM, Close TJ, Vallés MP.

Funct Integr Genomics. 2009 Aug;9(3):311-23. doi: 10.1007/s10142-009-0113-3. Epub 2009 Feb 20.

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