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Coordinated host-pathogen transcriptional dynamics revealed using sorted subpopulations and single macrophages infected with Candida albicans.

Muñoz JF, Delorey T, Ford CB, Li BY, Thompson DA, Rao RP, Cuomo CA.

Nat Commun. 2019 Apr 8;10(1):1607. doi: 10.1038/s41467-019-09599-8.


Erratum for Kim et al., "Genetic Analysis of Candida auris Implicates Hsp90 in Morphogenesis and Azole Tolerance and Cdr1 in Azole Resistance".

Kim SH, Iyer KR, Pardeshi L, Muñoz JF, Robbins N, Cuomo CA, Wong KH, Cowen LE.

MBio. 2019 Mar 19;10(2). pii: e00346-19. doi: 10.1128/mBio.00346-19. No abstract available.


Genetic Analysis of Candida auris Implicates Hsp90 in Morphogenesis and Azole Tolerance and Cdr1 in Azole Resistance.

Kim SH, Iyer KR, Pardeshi L, Muñoz JF, Robbins N, Cuomo CA, Wong KH, Cowen LE.

MBio. 2019 Jan 29;10(1). pii: e02529-18. doi: 10.1128/mBio.02529-18. Erratum in: MBio. 2019 Mar 19;10(2):.


Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species.

Muñoz JF, Gade L, Chow NA, Loparev VN, Juieng P, Berkow EL, Farrer RA, Litvintseva AP, Cuomo CA.

Nat Commun. 2018 Dec 17;9(1):5346. doi: 10.1038/s41467-018-07779-6.


Poly- and Perfluoroalkyl Substances in Runoff Water and Wastewater Sampled at a Firefighter Training Area.

Dauchy X, Boiteux V, Colin A, Bach C, Rosin C, Munoz JF.

Arch Environ Contam Toxicol. 2019 Feb;76(2):206-215. doi: 10.1007/s00244-018-0585-z. Epub 2018 Dec 4.


Deep seepage of per- and polyfluoroalkyl substances through the soil of a firefighter training site and subsequent groundwater contamination.

Dauchy X, Boiteux V, Colin A, Hémard J, Bach C, Rosin C, Munoz JF.

Chemosphere. 2019 Jan;214:729-737. doi: 10.1016/j.chemosphere.2018.10.003. Epub 2018 Oct 2.


Pathways of Pathogenicity: Transcriptional Stages of Germination in the Fatal Fungal Pathogen Rhizopus delemar.

Sephton-Clark PCS, Muñoz JF, Ballou ER, Cuomo CA, Voelz K.

mSphere. 2018 Sep 26;3(5). pii: e00403-18. doi: 10.1128/mSphere.00403-18.


Draft Genome Sequences of Two Sporothrix schenckii Clinical Isolates Associated with Human Sporotrichosis in Colombia.

Gomez OM, Alvarez LC, Muñoz JF, Misas E, Gallo JE, Jimenez MDP, Arango M, McEwen JG, Hernandez O, Clay OK.

Genome Announc. 2018 Jun 14;6(24). pii: e00495-18. doi: 10.1128/genomeA.00495-18.



De la Varga I, Muñoz JF, Bentz DP, Spragg RP, Stutzman PE, Graybeal BA.

Constr Build Mater. 2018 May;170:747-756. doi: 10.1016/j.conbuildmat.2018.03.076. Epub 2018 Mar 23.


Genome analysis reveals evolutionary mechanisms of adaptation in systemic dimorphic fungi.

Muñoz JF, McEwen JG, Clay OK, Cuomo CA.

Sci Rep. 2018 Mar 14;8(1):4473. doi: 10.1038/s41598-018-22816-6.


Influence of Substrate Moisture State and Roughness on Interface Microstructure and Bond Strength: Slant Shear vs. Pull-Off Testing.

Bentz DP, De la Varga I, Muñoz JF, Spragg RP, Graybeal BA, Hussey DS, Jacobson DL, Jones SZ, LaManna JM.

Cem Concr Compos. 2018 Mar;87:63-72. doi: 10.1016/j.cemconcomp.2017.12.005. Epub 2017 Dec 8.


Per- and polyfluoroalkyl substances in firefighting foam concentrates and water samples collected near sites impacted by the use of these foams.

Dauchy X, Boiteux V, Bach C, Rosin C, Munoz JF.

Chemosphere. 2017 Sep;183:53-61. doi: 10.1016/j.chemosphere.2017.05.056. Epub 2017 May 13.


Oral Cyanocobalamin is Effective in the Treatment of Vitamin B12 Deficiency in Crohn's Disease.

Gomollón F, Gargallo CJ, Muñoz JF, Vicente R, Lue A, Mir A, García-Alvarado M, Gracia M, García-López S.

Nutrients. 2017 Mar 20;9(3). pii: E308. doi: 10.3390/nu9030308.


Novel taxa of thermally dimorphic systemic pathogens in the Ajellomycetaceae (Onygenales).

Dukik K, Muñoz JF, Jiang Y, Feng P, Sigler L, Stielow JB, Freeke J, Jamalian A, Gerrits van den Ende B, McEwen JG, Clay OK, Schwartz IS, Govender NP, Maphanga TG, Cuomo CA, Moreno LF, Kenyon C, Borman AM, de Hoog S.

Mycoses. 2017 May;60(5):296-309. doi: 10.1111/myc.12601. Epub 2017 Feb 7.


Concentrations and patterns of perfluoroalkyl and polyfluoroalkyl substances in a river and three drinking water treatment plants near and far from a major production source.

Boiteux V, Dauchy X, Bach C, Colin A, Hemard J, Sagres V, Rosin C, Munoz JF.

Sci Total Environ. 2017 Apr 1;583:393-400. doi: 10.1016/j.scitotenv.2017.01.079. Epub 2017 Jan 20.


Paracoccidioides spp. catalases and their role in antioxidant defense against host defense responses.

Tamayo D, Muñoz JF, Almeida AJ, Puerta JD, Restrepo Á, Cuomo CA, McEwen JG, Hernández O.

Fungal Genet Biol. 2017 Mar;100:22-32. doi: 10.1016/j.fgb.2017.01.005. Epub 2017 Jan 16.


The impact of two fluoropolymer manufacturing facilities on downstream contamination of a river and drinking water resources with per- and polyfluoroalkyl substances.

Bach C, Dauchy X, Boiteux V, Colin A, Hemard J, Sagres V, Rosin C, Munoz JF.

Environ Sci Pollut Res Int. 2017 Feb;24(5):4916-4925. doi: 10.1007/s11356-016-8243-3. Epub 2016 Dec 17.


Mass flows and fate of per- and polyfluoroalkyl substances (PFASs) in the wastewater treatment plant of a fluorochemical manufacturing facility.

Dauchy X, Boiteux V, Bach C, Colin A, Hemard J, Rosin C, Munoz JF.

Sci Total Environ. 2017 Jan 15;576:549-558. doi: 10.1016/j.scitotenv.2016.10.130. Epub 2016 Oct 27.


Genome Diversity, Recombination, and Virulence across the Major Lineages of Paracoccidioides.

Muñoz JF, Farrer RA, Desjardins CA, Gallo JE, Sykes S, Sakthikumar S, Misas E, Whiston EA, Bagagli E, Soares CM, Teixeira MM, Taylor JW, Clay OK, McEwen JG, Cuomo CA.

mSphere. 2016 Sep 28;1(5). pii: e00213-16. eCollection 2016 Sep-Oct.


From NGS assembly challenges to instability of fungal mitochondrial genomes: A case study in genome complexity.

Misas E, Muñoz JF, Gallo JE, McEwen JG, Clay OK.

Comput Biol Chem. 2016 Apr;61:258-69. doi: 10.1016/j.compbiolchem.2016.02.016. Epub 2016 Feb 21.


Identification and Analysis of the Role of Superoxide Dismutases Isoforms in the Pathogenesis of Paracoccidioides spp.

Tamayo D, Muñoz JF, Lopez Á, Urán M, Herrera J, Borges CL, Restrepo Á, Soares CM, Taborda CP, Almeida AJ, McEwen JG, Hernández O.

PLoS Negl Trop Dis. 2016 Mar 10;10(3):e0004481. doi: 10.1371/journal.pntd.0004481. eCollection 2016 Mar.


50 Years of Emmonsia Disease in Humans: The Dramatic Emergence of a Cluster of Novel Fungal Pathogens.

Schwartz IS, Kenyon C, Feng P, Govender NP, Dukik K, Sigler L, Jiang Y, Stielow JB, Muñoz JF, Cuomo CA, Botha A, Stchigel AM, de Hoog GS.

PLoS Pathog. 2015 Nov 19;11(11):e1005198. doi: 10.1371/journal.ppat.1005198. eCollection 2015. Review. No abstract available.


Do constructed wetlands in grass strips reduce water contamination from drained fields?

Vallée R, Dousset S, Schott FX, Pallez C, Ortar A, Cherrier R, Munoz JF, Benoît M.

Environ Pollut. 2015 Dec;207:365-73. doi: 10.1016/j.envpol.2015.09.027. Epub 2015 Nov 2.


The Dynamic Genome and Transcriptome of the Human Fungal Pathogen Blastomyces and Close Relative Emmonsia.

Muñoz JF, Gauthier GM, Desjardins CA, Gallo JE, Holder J, Sullivan TD, Marty AJ, Carmen JC, Chen Z, Ding L, Gujja S, Magrini V, Misas E, Mitreva M, Priest M, Saif S, Whiston EA, Young S, Zeng Q, Goldman WE, Mardis ER, Taylor JW, McEwen JG, Clay OK, Klein BS, Cuomo CA.

PLoS Genet. 2015 Oct 6;11(10):e1005493. doi: 10.1371/journal.pgen.1005493. eCollection 2015 Oct.


Genome update of the dimorphic human pathogenic fungi causing paracoccidioidomycosis.

Muñoz JF, Gallo JE, Misas E, Priest M, Imamovic A, Young S, Zeng Q, Clay OK, McEwen JG, Cuomo CA.

PLoS Negl Trop Dis. 2014 Dec 4;8(12):e3348. doi: 10.1371/journal.pntd.0003348. eCollection 2014 Dec.


Occurrence, fate and behavior of parabens in aquatic environments: a review.

Haman C, Dauchy X, Rosin C, Munoz JF.

Water Res. 2015 Jan 1;68:1-11. Review.


The complex task of choosing a de novo assembly: lessons from fungal genomes.

Gallo JE, Muñoz JF, Misas E, McEwen JG, Clay OK.

Comput Biol Chem. 2014 Dec;53 Pt A:97-107. doi: 10.1016/j.compbiolchem.2014.08.014. Epub 2014 Aug 29.


Effect of sunlight exposure on the release of intentionally and/or non-intentionally added substances from polyethylene terephthalate (PET) bottles into water: chemical analysis and in vitro toxicity.

Bach C, Dauchy X, Severin I, Munoz JF, Etienne S, Chagnon MC.

Food Chem. 2014 Nov 1;162:63-71. doi: 10.1016/j.foodchem.2014.04.020. Epub 2014 Apr 13.


Occurrence of eight household micropollutants in urban wastewater and their fate in a wastewater treatment plant. Statistical evaluation.

Pasquini L, Munoz JF, Pons MN, Yvon J, Dauchy X, France X, Le ND, France-Lanord C, Görner T.

Sci Total Environ. 2014 May 15;481:459-68. doi: 10.1016/j.scitotenv.2014.02.075. Epub 2014 Mar 12.


Paracoccidioides brasiliensis PbP27 gene: knockdown procedures and functional characterization.

Torres I, Hernandez O, Tamayo D, Muñoz JF, García AM, Gómez BL, Restrepo A, McEwen JG.

FEMS Yeast Res. 2014 Mar;14(2):270-80. doi: 10.1111/1567-1364.12099. Epub 2013 Nov 1.


Is drinking water a major route of human exposure to alkylphenol and bisphenol contaminants in France?

Colin A, Bach C, Rosin C, Munoz JF, Dauchy X.

Arch Environ Contam Toxicol. 2014 Jan;66(1):86-99. doi: 10.1007/s00244-013-9942-0. Epub 2013 Aug 7.


Inhibition of PbGP43 expression may suggest that gp43 is a virulence factor in Paracoccidioides brasiliensis.

Torres I, Hernandez O, Tamayo D, Muñoz JF, Leitão NP Jr, García AM, Restrepo A, Puccia R, McEwen JG.

PLoS One. 2013 Jul 11;8(7):e68434. doi: 10.1371/journal.pone.0068434. Print 2013.


Impact of certain household micropollutants on bacterial behavior. Toxicity tests/study of extracellular polymeric substances in sludge.

Pasquini L, Merlin C, Hassenboehler L, Munoz JF, Pons MN, Görner T.

Sci Total Environ. 2013 Oct 1;463-464:355-65. doi: 10.1016/j.scitotenv.2013.06.018. Epub 2013 Jul 2.


The eukaryotic genome, its reads, and the unfinished assembly.

Muñoz JF, Gallo JE, Misas E, McEwen JG, Clay OK.

FEBS Lett. 2013 Jul 11;587(14):2090-3. doi: 10.1016/j.febslet.2013.05.048. Epub 2013 May 30.


Effect of temperature on the release of intentionally and non-intentionally added substances from polyethylene terephthalate (PET) bottles into water: chemical analysis and potential toxicity.

Bach C, Dauchy X, Severin I, Munoz JF, Etienne S, Chagnon MC.

Food Chem. 2013 Aug 15;139(1-4):672-80. doi: 10.1016/j.foodchem.2013.01.046. Epub 2013 Jan 29.


Simazine transport in undisturbed soils from a vineyard at the Casablanca valley, Chile.

Suárez F, Guzmán E, Muñoz JF, Bachmann J, Ortiz C, Alister C, Kogan M.

J Environ Manage. 2013 Mar 15;117:32-41. doi: 10.1016/j.jenvman.2012.12.026. Epub 2013 Jan 20.


Involvement of the 90 kDa heat shock protein during adaptation of Paracoccidioides brasiliensis to different environmental conditions.

Tamayo D, Muñoz JF, Torres I, Almeida AJ, Restrepo A, McEwen JG, Hernández O.

Fungal Genet Biol. 2013 Feb;51:34-41. doi: 10.1016/j.fgb.2012.11.005. Epub 2012 Dec 1.


Assessment of the bio-preparedness and of the training of the French hospital laboratories in the event of biological threat.

Merens A, Cavallo JD, Thibault F, Salicis F, Munoz JF, Courcol R, Binder P.

Euro Surveill. 2012 Nov 8;17(45). pii: 20312.


Relationship between industrial discharges and contamination of raw water resources by perfluorinated compounds. Part I: Case study of a fluoropolymer manufacturing plant.

Dauchy X, Boiteux V, Rosin C, Munoz JF.

Bull Environ Contam Toxicol. 2012 Sep;89(3):525-30. doi: 10.1007/s00128-012-0704-x. Epub 2012 Jun 16.


Relationship between industrial discharges and contamination of raw water resources by perfluorinated compounds: part II: Case study of a fluorotelomer polymer manufacturing plant.

Dauchy X, Boiteux V, Rosin C, Munoz JF.

Bull Environ Contam Toxicol. 2012 Sep;89(3):531-6. doi: 10.1007/s00128-012-0705-9. Epub 2012 Jun 15.


False-negative tumor-free margins following mohs surgery for aggressive trichoblastoma.

Umbert P, Muñoz JF.

Am J Dermatopathol. 2012 May;34(3):255-8. doi: 10.1097/DAD.0b013e318213f80d.


National screening study on 10 perfluorinated compounds in raw and treated tap water in France.

Boiteux V, Dauchy X, Rosin C, Munoz JF.

Arch Environ Contam Toxicol. 2012 Jul;63(1):1-12. doi: 10.1007/s00244-012-9754-7. Epub 2012 Mar 9.


Diagnosing delirium in critically ill children: Spanish translation and cultural adaptation of the Pediatric Confusion Assessment Method for the Intensive Care Unit.

Franco JG, Ricardo C, Muñoz JF, de Pablo J, W P, Ely EW, Smith HA.

Crit Care Med. 2012 Mar;40(3):1034. doi: 10.1097/CCM.0b013e31823c8b1c. No abstract available.


Differential PbP27 expression in the yeast and mycelial forms of the Paracoccidioides brasiliensis species complex.

García Blanco S, Muñoz JF, Torres I, Díez Posada S, Gómez BL, McEwen JG, Restrepo S, García AM.

Fungal Genet Biol. 2011 Dec;48(12):1087-95. doi: 10.1016/j.fgb.2011.09.001. Epub 2011 Sep 16.


Estimators and confidence intervals for the proportion using binary auxiliary information with applications to pharmaceutical studies.

Rueda M, Muñoz JF, Arcos A, Álvarez E, Martínez S.

J Biopharm Stat. 2011 May;21(3):526-54. doi: 10.1080/10543406.2010.485259.


Variations in trihalomethane levels in three French water distribution systems and the development of a predictive model.

Mouly D, Joulin E, Rosin C, Beaudeau P, Zeghnoun A, Olszewski-Ortar A, Munoz JF, Welté B, Joyeux M, Seux R, Montiel A, Rodriguez MJ.

Water Res. 2010 Oct;44(18):5168-79. doi: 10.1016/j.watres.2010.06.028. Epub 2010 Jun 19.


[Spanish version of the CAM-ICU (Confusion Assessment Method for the Intensive Care Unit). Pilot study of validation].

Toro AC, Escobar LM, Franco JG, Díaz-Gómez JL, Muñoz JF, Molina F, Bejarano J, Yepes D, Navarro E, García A, Ely WE, Esteban A.

Med Intensiva. 2010 Jan-Feb;34(1):14-21. doi: 10.1016/j.medin.2009.07.002. Epub 2009 Sep 30. Spanish.


Long-term outcomes in patients with schizophrenia treated with risperidone long-acting injection or oral antipsychotics in Spain: results from the electronic Schizophrenia Treatment Adherence Registry (e-STAR).

Olivares JM, Rodriguez-Morales A, Diels J, Povey M, Jacobs A, Zhao Z, Lam A, Villalobos Vega JC, Cuéllar JA, de Castro FJ, Quintero CM, Martíin JF, Domínguez P, Ojeda JL, Cortés SS, Cala FI, Marín CG, Castro LM, Duaso MA, Albarracín JR, Vergara GN, Benítez AF, Cleries FM, Pérez-Brian JM, Aragón AB, Navarro JC, Biedma JA, de Pedro RB, González JF, López ME, Moreno HD, López JA, Rodríguez EO, de Hoyos CM, Sacristán MP, Martín MD, Ballesteros EM, Rodríguez PA, Menéndez LF, Rivas RS, del Pino Cuadrado P, Lauffer JC, Solano JJ, Martínez JM, Solano FG, Rodríguez PG, Rodríguez JA, Cano TR, Fortacin MD, Lobeiras JM, Sampedro JM, Bravo AP, Pellicer AF, López MD, Liste JF, Fernández MR, Losada AC, Mendez RV, Romero SA, Blanco JJ, Bonaselt IT, Mahia MC, del Valle EF, Yañez PQ, Camarasa MG, Alonso JA, Mendez GF, Feliz FD, Lamela MA, Piñero MV, Alvarado PF, Gómez IL, Martín PF, Gómez JL, López AG, Jiménez AR, Nafs AE, Barquero NC, Ortiz RF, Noguera JL, Carrasco PR, Muñoz JM, Palma MM, Hortelano CM, Bonome LS, Sevilla JS, Juan JM, Ramos JM, Muñoz JL, Guisasola JE, Vazquez LS, Guerras FC, Nebot FJ, Fernández FJ, Nicolau AL, Subirats RC, Kidias MM, Navarro VF, García BF, del Rosal FM, de Vicente Muñoz T, Ballester JA, Lieb PM, Martel AD, Bea ER, Joaquim IG, Enjuanes FB, Piñol MB, Carbonell EF, Muñoz RM, Giribets CA, Sans LA, Blanco AS, Felipe MA, Muñoz PG, Villanueva AP, Arroyo MB, Borri RC, Fallada SM, Merola MC, Rodon EP, Palmes JR, Martínez EP, Catala JM, Coca AS, Ferrandiz FP, Paya EF, Caballero GI, Bonet AF, Figueras JF, Pagador PM, Garibo MM, Camo VP, Carrillo CS, Valero CP, Rebollo FJ, García Campayo J, Sala Ayma JM, Roig MM, de Uña Mateos MA, Bertolin RG, García AM, Mazo FJ, Velasco JL, Pérez LS, Casado CJ, Barba JJ, Diaz MC, Rubio JP, Mandoli AS, Herrero AU, Martínez AR, Serrano PS, Rodríguez EN, Montesinos JS, Macia JF, Mateos Marcos AM, Soto JV, Dumont MV, Pagan JP, Martínez VB, Santiuste de Pablos M, Delgado CE, Quiles MD, López FJ, Navarro PP, Torres AM, Ingles FJ, Arias-Camison JM, Manzano JC, Peña RV, Guitarte GP, Fontecilla HB, Romero JB, Gil RS, Lozano JM, Adanez LD, Zarranz Herrera-Oria I, Jiménez JP, Vaz FC, García OS, Anton CC, Casula RR, Hernandez MC, Escabias FT, Torresano JR, Pérez-Villamil AH, Estevez L, Figuero MA, Muñoz de Morales A, Calvin JL, Criado MD, Rodríguez VM, Ambrosolio EB, Madera PM, Alfaro GP, Vidal MM, Valtuille AG, Ruiz O, Cabornero GL, Echevarria Martínez de Bujo M, Mallen MJ, Puigros JS, Martorell AL, Forteza AC, Arrebola ER, Rodríguez de la Torre M, Saiz CG, Bardolet I Casas C, Linde ER, De Arce Cordon R, Molina EM, Carazo FJ, Romero JJ, Cano DV, Dorado MS, Velazquez SC, Sánchez AJ, Leon SO, Sánchez KP, Benitez MH, Zugarramurai AI, Contreras MA, De la Varga González M, Marín PB, Robina FG, García MS, Pérez FJ, Bros PC, Gómez AC, de Dios Molina Martín J, Perera JL, Averbach MC, Perera JL, Palancares EG, Gallego de Dios MT, Rojo CF, Iglesias SS, Merino MI, Mestre NP, Urdaniz AP, Sánchez JM, Seco RG, Muñoz JF, Agut MM, Lozano ML, Herguedas FM, Pena AT, García JV, Martínez AV, Sanz Granado OS, Fernández MA, Canseco JM, López PA, Martín MA, Barrio JA, Ubago JG, Bennassar MR, Díez JM, Fleta JL, Fortes FP, López CA, Medina O, Alvarez DF, Roca JM, Valladolid GR, Tavera JA, García-Castrillon Sales JA, Llordes IB, Melgarejo CA, Cañas de la Paz F, Callol VV, García MB, García JB, Leal FJ, Corrales EC, Iglesias ES, Gómez MA, Serrano GG, Chillarón EG, Aguado FJ, Castillo JJ, González AG, Vázquez JG, Peralvarez MB, Diaz MR, Mesa MY, Artiles FJ, Chao MA, Mesa MY, del Rosario Santana P, Escudero MA, Berenguer MM, Llacer JM, Berna JA, Ortiz JB, Pardell LT, Hernández-Alvarez de Sotomayor C, Méndez MR, Garate RC, Múgica BD, González MC, Domingo JP, Navarro CS, Vera GS, Cuquerella MA, Monzo JL, Boada PC, Pérez MF, Parrado EC, Sánchez JJ, Fernández JC; e-STAR Spanish Study Group.

Eur Psychiatry. 2009 Jun;24(5):287-96. doi: 10.1016/j.eurpsy.2008.12.002. Epub 2009 Feb 4.


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