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Items: 46

1.

A Laurasian origin for a pantropical bird radiation is supported by genomic and fossil data (Aves: Coraciiformes).

McCullough JM, Moyle RG, Smith BT, Andersen MJ.

Proc Biol Sci. 2019 Sep 11;286(1910):20190122. doi: 10.1098/rspb.2019.0122. Epub 2019 Sep 11.

PMID:
31506056
2.

Two lineages of kingfisher feather lice exhibit differing degrees of cospeciation with their hosts.

Catanach TA, Johnson KP, Marks BD, Moyle RG, Valim MP, Weckstein JD.

Parasitology. 2019 Jul;146(8):1083-1095. doi: 10.1017/S0031182019000453. Epub 2019 May 3.

PMID:
31046855
3.

Earth history and the passerine superradiation.

Oliveros CH, Field DJ, Ksepka DT, Barker FK, Aleixo A, Andersen MJ, Alström P, Benz BW, Braun EL, Braun MJ, Bravo GA, Brumfield RT, Chesser RT, Claramunt S, Cracraft J, Cuervo AM, Derryberry EP, Glenn TC, Harvey MG, Hosner PA, Joseph L, Kimball RT, Mack AL, Miskelly CM, Peterson AT, Robbins MB, Sheldon FH, Silveira LF, Smith BT, White ND, Moyle RG, Faircloth BC.

Proc Natl Acad Sci U S A. 2019 Apr 16;116(16):7916-7925. doi: 10.1073/pnas.1813206116. Epub 2019 Apr 1.

4.

Near-complete phylogeny and taxonomic revision of the world's babblers (Aves: Passeriformes).

Cai T, Cibois A, Alström P, Moyle RG, Kennedy JD, Shao S, Zhang R, Irestedt M, Ericson PGP, Gelang M, Qu Y, Lei F, Fjeldså J.

Mol Phylogenet Evol. 2019 Jan;130:346-356. doi: 10.1016/j.ympev.2018.10.010. Epub 2018 Oct 12.

PMID:
30321696
5.

Multiple and Independent Phases of Transposable Element Amplification in the Genomes of Piciformes (Woodpeckers and Allies).

Manthey JD, Moyle RG, Boissinot S.

Genome Biol Evol. 2018 Jun 1;10(6):1445-1456. doi: 10.1093/gbe/evy105.

6.

Comprehensive molecular phylogeny of the grassbirds and allies (Locustellidae) reveals extensive non-monophyly of traditional genera, and a proposal for a new classification.

Alström P, Cibois A, Irestedt M, Zuccon D, Gelang M, Fjeldså J, Andersen MJ, Moyle RG, Pasquet E, Olsson U.

Mol Phylogenet Evol. 2018 Oct;127:367-375. doi: 10.1016/j.ympev.2018.03.029. Epub 2018 Apr 3.

PMID:
29625229
7.

Genomic data resolve gene tree discordance in spiderhunters (Nectariniidae, Arachnothera).

Campillo LC, Oliveros CH, Sheldon FH, Moyle RG.

Mol Phylogenet Evol. 2018 Mar;120:151-157. doi: 10.1016/j.ympev.2017.12.011. Epub 2017 Dec 11.

PMID:
29242166
8.

Evolutionary and ecological forces influencing population diversification in Bornean montane passerines.

Chua VL, Smith BT, Burner RC, Rahman MA, Lakim M, Prawiradilaga DM, Moyle RG, Sheldon FH.

Mol Phylogenet Evol. 2017 Aug;113:139-149. doi: 10.1016/j.ympev.2017.05.016. Epub 2017 May 22.

PMID:
28545973
9.

A genome-wide assessment of stages of elevational parapatry in Bornean passerine birds reveals no introgression: implications for processes and patterns of speciation.

Moyle RG, Manthey JD, Hosner PA, Rahman M, Lakim M, Sheldon FH.

PeerJ. 2017 May 18;5:e3335. doi: 10.7717/peerj.3335. eCollection 2017.

10.

Tectonic collision and uplift of Wallacea triggered the global songbird radiation.

Moyle RG, Oliveros CH, Andersen MJ, Hosner PA, Benz BW, Manthey JD, Travers SL, Brown RM, Faircloth BC.

Nat Commun. 2016 Aug 30;7:12709. doi: 10.1038/ncomms12709.

11.

Mutations in different pigmentation genes are associated with parallel melanism in island flycatchers.

Uy JA, Cooper EA, Cutie S, Concannon MR, Poelstra JW, Moyle RG, Filardi CE.

Proc Biol Sci. 2016 Jul 13;283(1834). pii: 20160731. doi: 10.1098/rspb.2016.0731.

12.

Comparison of Target-Capture and Restriction-Site Associated DNA Sequencing for Phylogenomics: A Test in Cardinalid Tanagers (Aves, Genus: Piranga).

Manthey JD, Campillo LC, Burns KJ, Moyle RG.

Syst Biol. 2016 Jul;65(4):640-50. doi: 10.1093/sysbio/syw005. Epub 2016 Jan 28.

13.

A genomic investigation of the putative contact zone between divergent Brown Creeper (Certhia americana) lineages: chromosomal patterns of genetic differentiation.

Manthey JD, Robbins MB, Moyle RG.

Genome. 2016 Feb;59(2):115-25. doi: 10.1139/gen-2015-0093. Epub 2015 Nov 20.

PMID:
26794151
14.

Genetic Differentiation in Insular Lowland Rainforests: Insights from Historical Demographic Patterns in Philippine Birds.

Sánchez-González LA, Hosner PA, Moyle RG.

PLoS One. 2015 Aug 27;10(8):e0134284. doi: 10.1371/journal.pone.0134284. eCollection 2015.

15.

Rapid diversification and secondary sympatry in Australo-Pacific kingfishers (Aves: Alcedinidae: Todiramphus).

Andersen MJ, Shult HT, Cibois A, Thibault JC, Filardi CE, Moyle RG.

R Soc Open Sci. 2015 Feb 4;2(2):140375. doi: 10.1098/rsos.140375. eCollection 2015 Feb.

16.

Isolation by environment in White-breasted Nuthatches (Sitta carolinensis) of the Madrean Archipelago sky islands: a landscape genomics approach.

Manthey JD, Moyle RG.

Mol Ecol. 2015 Jul;24(14):3628-38. doi: 10.1111/mec.13258. Epub 2015 Jul 2.

PMID:
26037653
17.

Phylogeny of the monarch flycatchers reveals extensive paraphyly and novel relationships within a major Australo-Pacific radiation.

Andersen MJ, Hosner PA, Filardi CE, Moyle RG.

Mol Phylogenet Evol. 2015 Feb;83:118-36. doi: 10.1016/j.ympev.2014.11.010. Epub 2014 Nov 22.

PMID:
25463752
18.

Untangling taxonomic confusion and diversification patterns of the Streak-breasted Scimitar Babblers (Timaliidae: Pomatorhinus ruficollis complex) in southern Asia.

Reddy S, Sharief S, Yohe LR, Witkowski J, Hosner PA, Nyári ÁS, Moyle RG.

Mol Phylogenet Evol. 2015 Jan;82 Pt A:183-92. doi: 10.1016/j.ympev.2014.10.013. Epub 2014 Oct 27.

PMID:
25450499
19.

Phylogeny and biogeography of Ficedula flycatchers (Aves: Muscicapidae): novel results from fresh source material.

Moyle RG, Hosner PA, Jones AW, Outlaw DC.

Mol Phylogenet Evol. 2015 Jan;82 Pt A:87-94. doi: 10.1016/j.ympev.2014.09.029. Epub 2014 Oct 13.

PMID:
25307119
20.

Climate-driven diversification and Pleistocene refugia in Philippine birds: evidence from phylogeographic structure and paleoenvironmental niche modeling.

Hosner PA, Sánchez-González LA, Peterson AT, Moyle RG.

Evolution. 2014 Sep;68(9):2658-74. doi: 10.1111/evo.12459. Epub 2014 Jul 10.

PMID:
24890129
21.

A molecular phylogeny of Pacific honeyeaters (Aves: Meliphagidae) reveals extensive paraphyly and an isolated Polynesian radiation.

Andersen MJ, Naikatini A, Moyle RG.

Mol Phylogenet Evol. 2014 Feb;71:308-15. doi: 10.1016/j.ympev.2013.11.014. Epub 2013 Dec 6.

PMID:
24315868
22.

A reconsideration of Gallicolumba (Aves: Columbidae) relationships using fresh source material reveals pseudogenes, chimeras, and a novel phylogenetic hypothesis.

Moyle RG, Jones RM, Andersen MJ.

Mol Phylogenet Evol. 2013 Mar;66(3):1060-6. doi: 10.1016/j.ympev.2012.11.024. Epub 2012 Dec 6.

PMID:
23220516
23.

The phylogenetic position of some Philippine "babblers" spans the muscicapoid and sylvioid bird radiations.

Oliveros CH, Reddy S, Moyle RG.

Mol Phylogenet Evol. 2012 Nov;65(2):799-804. doi: 10.1016/j.ympev.2012.07.029. Epub 2012 Aug 2.

PMID:
22877643
24.

Molecular phylogeny and insular biogeography of the lowland tailorbirds of Southeast Asia (Cisticolidae: Orthotomus).

Sheldon FH, Oliveros CH, Taylor SS, McKay B, Lim HC, Abdul Rahman M, Mays H, Moyle RG.

Mol Phylogenet Evol. 2012 Oct;65(1):54-63. doi: 10.1016/j.ympev.2012.05.023. Epub 2012 Jun 9.

PMID:
22687636
25.

Phylogeny and biogeography of the core babblers (Aves: Timaliidae).

Moyle RG, Andersen MJ, Oliveros CH, Steinheimer FD, Reddy S.

Syst Biol. 2012 Jul;61(4):631-51. doi: 10.1093/sysbio/sys027. Epub 2012 Feb 10.

PMID:
22328569
26.

Molecular systematics and species limits in the Philippine fantails (Aves: Rhipidura).

Sánchez-González LA, Moyle RG.

Mol Phylogenet Evol. 2011 Nov;61(2):290-9. doi: 10.1016/j.ympev.2011.06.013. Epub 2011 Jun 22.

PMID:
21722744
27.

Phylogeny and biogeography of the Asian trogons (Aves: Trogoniformes) inferred from nuclear and mitochondrial DNA sequences.

Hosner PA, Sheldon FH, Lim HC, Moyle RG.

Mol Phylogenet Evol. 2010 Dec;57(3):1219-25. doi: 10.1016/j.ympev.2010.09.008. Epub 2010 Sep 19.

PMID:
20858547
28.

Revisiting Wallace's haunt: coalescent simulations and comparative niche modeling reveal historical mechanisms that promoted avian population divergence in the Malay Archipelago.

Lim HC, Rahman MA, Lim SL, Moyle RG, Sheldon FH.

Evolution. 2011 Feb;65(2):321-34. doi: 10.1111/j.1558-5646.2010.01105.x. Epub 2010 Sep 29.

PMID:
20796023
29.

Origin and diversification of Philippine bulbuls.

Oliveros CH, Moyle RG.

Mol Phylogenet Evol. 2010 Mar;54(3):822-32. doi: 10.1016/j.ympev.2009.12.001. Epub 2009 Dec 6.

PMID:
19995611
30.

Phylogenetic relationships of flowerpeckers (Aves: Dicaeidae): novel insights into the evolution of a tropical passerine clade.

Nyári AS, Peterson AT, Rice NH, Moyle RG.

Mol Phylogenet Evol. 2009 Dec;53(3):613-9. doi: 10.1016/j.ympev.2009.06.014. Epub 2009 Jul 2.

PMID:
19576993
31.
32.

Explosive Pleistocene diversification and hemispheric expansion of a "great speciator".

Moyle RG, Filardi CE, Smith CE, Diamond J.

Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):1863-8. doi: 10.1073/pnas.0809861105. Epub 2009 Jan 30.

33.

Clarifying the systematics of an enigmatic avian lineage: what is a bombycillid?

Spellman GM, Cibois A, Moyle RG, Winker K, Keith Barker F.

Mol Phylogenet Evol. 2008 Dec;49(3):1036-40. doi: 10.1016/j.ympev.2008.09.006. Epub 2008 Sep 18. No abstract available.

34.

Plumage and song differences mediate species recognition between incipient flycatcher species of the Solomon Islands.

Uy JA, Moyle RG, Filardi CE.

Evolution. 2009 Jan;63(1):153-64. doi: 10.1111/j.1558-5646.2008.00530.x. Epub 2008 Sep 18.

PMID:
18803681
35.

The need for proper vouchering in phylogenetic studies of birds.

Peterson AT, Moyle RG, Nyári AS, Robbins MB, Brumfield RT, Remsen JV Jr.

Mol Phylogenet Evol. 2007 Dec;45(3):1042-4. Epub 2007 Sep 18. No abstract available.

PMID:
17962047
36.

Molecular phylogenetics of the bee-eaters (Aves: Meropidae) based on nuclear and mitochondrial DNA sequence data.

Marks BD, Weckstein JD, Moyle RG.

Mol Phylogenet Evol. 2007 Oct;45(1):23-32. Epub 2007 Jul 18.

PMID:
17716922
37.
38.

Molecular phylogenetic analysis of the Grey-cheeked Fulvetta (Alcippe morrisonia) of China and Indochina: a case of remarkable genetic divergence in a "species".

Zou F, Lim HC, Marks BD, Moyle RG, Sheldon FH.

Mol Phylogenet Evol. 2007 Jul;44(1):165-74. Epub 2006 Dec 20. Erratum in: Mol Phylogenet Evol. 2008 Oct;49(1):410.

PMID:
17300964
39.

Phylogenetic relationships of the bulbuls (Aves: Pycnonotidae) based on mitochondrial and nuclear DNA sequence data.

Moyle RG, Marks BD.

Mol Phylogenet Evol. 2006 Sep;40(3):687-95. Epub 2006 Apr 28.

PMID:
16750401
40.

Reconsideration of the phylogenetic relationships of the enigmatic Bornean Bristlehead (Pityriasis gymnocephala).

Moyle RG, Cracraft J, Lakim M, Nais J, Sheldon FH.

Mol Phylogenet Evol. 2006 Jun;39(3):893-8. Epub 2006 Mar 9. No abstract available.

PMID:
16524745
41.

Single origin of a pan-Pacific bird group and upstream colonization of Australasia.

Filardi CE, Moyle RG.

Nature. 2005 Nov 10;438(7065):216-9.

PMID:
16281034
42.

Petrographic evidence shows that pottery exchange between the Olmec and their neighbors was two-way.

Stoltman JB, Marcus J, Flannery KV, Burton JH, Moyle RG.

Proc Natl Acad Sci U S A. 2005 Aug 9;102(32):11213-8. Epub 2005 Aug 1.

43.

Phylogeny of swallows (Aves: Hirundinidae) estimated from nuclear and mitochondrial DNA sequences.

Sheldon FH, Whittingham LA, Moyle RG, Slikas B, Winkler DW.

Mol Phylogenet Evol. 2005 Apr;35(1):254-70. Epub 2005 Jan 20.

PMID:
15737595
44.

Calibration of molecular clocks and the biogeographic history of Crypteroniaceae.

Moyle RG.

Evolution. 2004 Aug;58(8):1871-3; discussion 1874-6.

PMID:
15446441
45.
46.

The perils of using host relationships in parasite taxonomy: phylogeny of the Degeeriella complex.

Johnson KP, Weckstein JD, Witt CC, Faucett RC, Moyle RG.

Mol Phylogenet Evol. 2002 May;23(2):150-7.

PMID:
12069547

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