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Items: 1 to 50 of 54

1.

The Splicing Factor RNA-Binding Fox Protein 1 Mediates the Cellular Immune Response in Drosophila melanogaster.

Nazario-Toole AE, Robalino J, Okrah K, Corrada-Bravo H, Mount SM, Wu LP.

J Immunol. 2018 Aug 15;201(4):1154-1164. doi: 10.4049/jimmunol.1800496. Epub 2018 Jul 11.

PMID:
29997126
2.

Consensus Coexpression Network Analysis Identifies Key Regulators of Flower and Fruit Development in Wild Strawberry.

Shahan R, Zawora C, Wight H, Sittmann J, Wang W, Mount SM, Liu Z.

Plant Physiol. 2018 Sep;178(1):202-216. doi: 10.1104/pp.18.00086. Epub 2018 Jul 10.

3.

Transcriptome analyses reveal SR45 to be a neutral splicing regulator and a suppressor of innate immunity in Arabidopsis thaliana.

Zhang XN, Shi Y, Powers JJ, Gowda NB, Zhang C, Ibrahim HMM, Ball HB, Chen SL, Lu H, Mount SM.

BMC Genomics. 2017 Oct 11;18(1):772. doi: 10.1186/s12864-017-4183-7.

4.

A Genealogical Look at Shared Ancestry on the X Chromosome.

Buffalo V, Mount SM, Coop G.

Genetics. 2016 Sep;204(1):57-75. doi: 10.1534/genetics.116.190041. Epub 2016 Jun 29.

5.

Recognizing the 35th anniversary of the proposal that snRNPs are involved in splicing.

Mount SM, Wolin SL.

Mol Biol Cell. 2015 Oct 15;26(20):3557-60. doi: 10.1091/mbc.E14-10-1486.

6.

Erratum to: Evaluation of BLAST-based edge-weighting metrics used for homology inference with the Markov Clustering algorithm.

Gibbons TR, Mount SM, Cooper ED, Delwiche CF.

BMC Bioinformatics. 2015 Aug 28;16:274. doi: 10.1186/s12859-015-0690-1. No abstract available.

7.

Evaluation of BLAST-based edge-weighting metrics used for homology inference with the Markov Clustering algorithm.

Gibbons TR, Mount SM, Cooper ED, Delwiche CF.

BMC Bioinformatics. 2015 Jul 10;16:218. doi: 10.1186/s12859-015-0625-x. Erratum in: BMC Bioinformatics. 2015;16:274.

8.

Insights from GWAS: emerging landscape of mechanisms underlying complex trait disease.

Pal LR, Yu CH, Mount SM, Moult J.

BMC Genomics. 2015;16 Suppl 8:S4. doi: 10.1186/1471-2164-16-S8-S4. Epub 2015 Jun 18.

9.

Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms.

Patro R, Mount SM, Kingsford C.

Nat Biotechnol. 2014 May;32(5):462-4. doi: 10.1038/nbt.2862. Epub 2014 Apr 20.

10.

Evolutionary dynamics of U12-type spliceosomal introns.

Lin CF, Mount SM, Jarmołowski A, Makałowski W.

BMC Evol Biol. 2010 Feb 17;10:47. doi: 10.1186/1471-2148-10-47.

11.

Two alternatively spliced isoforms of the Arabidopsis SR45 protein have distinct roles during normal plant development.

Zhang XN, Mount SM.

Plant Physiol. 2009 Jul;150(3):1450-8. doi: 10.1104/pp.109.138180. Epub 2009 Apr 29.

12.

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).

Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KL, Salzberg SL, Feng L, Jones MR, Skelton RL, Murray JE, Chen C, Qian W, Shen J, Du P, Eustice M, Tong E, Tang H, Lyons E, Paull RE, Michael TP, Wall K, Rice DW, Albert H, Wang ML, Zhu YJ, Schatz M, Nagarajan N, Acob RA, Guan P, Blas A, Wai CM, Ackerman CM, Ren Y, Liu C, Wang J, Wang J, Na JK, Shakirov EV, Haas B, Thimmapuram J, Nelson D, Wang X, Bowers JE, Gschwend AR, Delcher AL, Singh R, Suzuki JY, Tripathi S, Neupane K, Wei H, Irikura B, Paidi M, Jiang N, Zhang W, Presting G, Windsor A, Navajas-Pérez R, Torres MJ, Feltus FA, Porter B, Li Y, Burroughs AM, Luo MC, Liu L, Christopher DA, Mount SM, Moore PH, Sugimura T, Jiang J, Schuler MA, Friedman V, Mitchell-Olds T, Shippen DE, dePamphilis CW, Palmer JD, Freeling M, Paterson AH, Gonsalves D, Wang L, Alam M.

Nature. 2008 Apr 24;452(7190):991-6. doi: 10.1038/nature06856.

13.

Evolution of genes and genomes on the Drosophila phylogeny.

Drosophila 12 Genomes Consortium, Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artieri CG, Barbash DA, Barker D, Barsanti P, Batterham P, Batzoglou S, Begun D, Bhutkar A, Blanco E, Bosak SA, Bradley RK, Brand AD, Brent MR, Brooks AN, Brown RH, Butlin RK, Caggese C, Calvi BR, Bernardo de Carvalho A, Caspi A, Castrezana S, Celniker SE, Chang JL, Chapple C, Chatterji S, Chinwalla A, Civetta A, Clifton SW, Comeron JM, Costello JC, Coyne JA, Daub J, David RG, Delcher AL, Delehaunty K, Do CB, Ebling H, Edwards K, Eickbush T, Evans JD, Filipski A, Findeiss S, Freyhult E, Fulton L, Fulton R, Garcia AC, Gardiner A, Garfield DA, Garvin BE, Gibson G, Gilbert D, Gnerre S, Godfrey J, Good R, Gotea V, Gravely B, Greenberg AJ, Griffiths-Jones S, Gross S, Guigo R, Gustafson EA, Haerty W, Hahn MW, Halligan DL, Halpern AL, Halter GM, Han MV, Heger A, Hillier L, Hinrichs AS, Holmes I, Hoskins RA, Hubisz MJ, Hultmark D, Huntley MA, Jaffe DB, Jagadeeshan S, Jeck WR, Johnson J, Jones CD, Jordan WC, Karpen GH, Kataoka E, Keightley PD, Kheradpour P, Kirkness EF, Koerich LB, Kristiansen K, Kudrna D, Kulathinal RJ, Kumar S, Kwok R, Lander E, Langley CH, Lapoint R, Lazzaro BP, Lee SJ, Levesque L, Li R, Lin CF, Lin MF, Lindblad-Toh K, Llopart A, Long M, Low L, Lozovsky E, Lu J, Luo M, Machado CA, Makalowski W, Marzo M, Matsuda M, Matzkin L, McAllister B, McBride CS, McKernan B, McKernan K, Mendez-Lago M, Minx P, Mollenhauer MU, Montooth K, Mount SM, Mu X, Myers E, Negre B, Newfeld S, Nielsen R, Noor MA, O'Grady P, Pachter L, Papaceit M, Parisi MJ, Parisi M, Parts L, Pedersen JS, Pesole G, Phillippy AM, Ponting CP, Pop M, Porcelli D, Powell JR, Prohaska S, Pruitt K, Puig M, Quesneville H, Ram KR, Rand D, Rasmussen MD, Reed LK, Reenan R, Reily A, Remington KA, Rieger TT, Ritchie MG, Robin C, Rogers YH, Rohde C, Rozas J, Rubenfield MJ, Ruiz A, Russo S, Salzberg SL, Sanchez-Gracia A, Saranga DJ, Sato H, Schaeffer SW, Schatz MC, Schlenke T, Schwartz R, Segarra C, Singh RS, Sirot L, Sirota M, Sisneros NB, Smith CD, Smith TF, Spieth J, Stage DE, Stark A, Stephan W, Strausberg RL, Strempel S, Sturgill D, Sutton G, Sutton GG, Tao W, Teichmann S, Tobari YN, Tomimura Y, Tsolas JM, Valente VL, Venter E, Venter JC, Vicario S, Vieira FG, Vilella AJ, Villasante A, Walenz B, Wang J, Wasserman M, Watts T, Wilson D, Wilson RK, Wing RA, Wolfner MF, Wong A, Wong GK, Wu CI, Wu G, Yamamoto D, Yang HP, Yang SP, Yorke JA, Yoshida K, Zdobnov E, Zhang P, Zhang Y, Zimin AV, Baldwin J, Abdouelleil A, Abdulkadir J, Abebe A, Abera B, Abreu J, Acer SC, Aftuck L, Alexander A, An P, Anderson E, Anderson S, Arachi H, Azer M, Bachantsang P, Barry A, Bayul T, Berlin A, Bessette D, Bloom T, Blye J, Boguslavskiy L, Bonnet C, Boukhgalter B, Bourzgui I, Brown A, Cahill P, Channer S, Cheshatsang Y, Chuda L, Citroen M, Collymore A, Cooke P, Costello M, D'Aco K, Daza R, De Haan G, DeGray S, DeMaso C, Dhargay N, Dooley K, Dooley E, Doricent M, Dorje P, Dorjee K, Dupes A, Elong R, Falk J, Farina A, Faro S, Ferguson D, Fisher S, Foley CD, Franke A, Friedrich D, Gadbois L, Gearin G, Gearin CR, Giannoukos G, Goode T, Graham J, Grandbois E, Grewal S, Gyaltsen K, Hafez N, Hagos B, Hall J, Henson C, Hollinger A, Honan T, Huard MD, Hughes L, Hurhula B, Husby ME, Kamat A, Kanga B, Kashin S, Khazanovich D, Kisner P, Lance K, Lara M, Lee W, Lennon N, Letendre F, LeVine R, Lipovsky A, Liu X, Liu J, Liu S, Lokyitsang T, Lokyitsang Y, Lubonja R, Lui A, MacDonald P, Magnisalis V, Maru K, Matthews C, McCusker W, McDonough S, Mehta T, Meldrim J, Meneus L, Mihai O, Mihalev A, Mihova T, Mittelman R, Mlenga V, Montmayeur A, Mulrain L, Navidi A, Naylor J, Negash T, Nguyen T, Nguyen N, Nicol R, Norbu C, Norbu N, Novod N, O'Neill B, Osman S, Markiewicz E, Oyono OL, Patti C, Phunkhang P, Pierre F, Priest M, Raghuraman S, Rege F, Reyes R, Rise C, Rogov P, Ross K, Ryan E, Settipalli S, Shea T, Sherpa N, Shi L, Shih D, Sparrow T, Spaulding J, Stalker J, Stange-Thomann N, Stavropoulos S, Stone C, Strader C, Tesfaye S, Thomson T, Thoulutsang Y, Thoulutsang D, Topham K, Topping I, Tsamla T, Vassiliev H, Vo A, Wangchuk T, Wangdi T, Weiand M, Wilkinson J, Wilson A, Yadav S, Young G, Yu Q, Zembek L, Zhong D, Zimmer A, Zwirko Z, Jaffe DB, Alvarez P, Brockman W, Butler J, Chin C, Gnerre S, Grabherr M, Kleber M, Mauceli E, MacCallum I.

Nature. 2007 Nov 8;450(7167):203-18.

PMID:
17994087
14.

Features generated for computational splice-site prediction correspond to functional elements.

Dogan RI, Getoor L, Wilbur WJ, Mount SM.

BMC Bioinformatics. 2007 Oct 24;8:410.

15.

SplicePort--an interactive splice-site analysis tool.

Dogan RI, Getoor L, Wilbur WJ, Mount SM.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W285-91. Epub 2007 Jun 18.

16.
17.

Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis.

Campbell MA, Haas BJ, Hamilton JP, Mount SM, Buell CR.

BMC Genomics. 2006 Dec 28;7:327.

18.

Spliceosomal small nuclear RNA genes in 11 insect genomes.

Mount SM, Gotea V, Lin CF, Hernandez K, Makalowski W.

RNA. 2007 Jan;13(1):5-14. Epub 2006 Nov 9.

19.

The Drosophila U1-70K protein is required for viability, but its arginine-rich domain is dispensable.

Salz HK, Mancebo RS, Nagengast AA, Speck O, Psotka M, Mount SM.

Genetics. 2004 Dec;168(4):2059-65.

20.

Reducing storage requirements for biological sequence comparison.

Roberts M, Hayes W, Hunt BR, Mount SM, Yorke JA.

Bioinformatics. 2004 Dec 12;20(18):3363-9. Epub 2004 Jul 15.

PMID:
15256412
21.

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies.

Haas BJ, Delcher AL, Mount SM, Wortman JR, Smith RK Jr, Hannick LI, Maiti R, Ronning CM, Rusch DB, Town CD, Salzberg SL, White O.

Nucleic Acids Res. 2003 Oct 1;31(19):5654-66.

22.

Sex-lethal splicing autoregulation in vivo: interactions between SEX-LETHAL, the U1 snRNP and U2AF underlie male exon skipping.

Nagengast AA, Stitzinger SM, Tseng CH, Mount SM, Salz HK.

Development. 2003 Feb;130(3):463-71.

23.

Evidence for a plastid origin of plant ethylene receptor genes.

Mount SM, Chang C.

Plant Physiol. 2002 Sep;130(1):10-4. No abstract available.

24.

Genomic sequence, splicing, and gene annotation.

Mount SM.

Am J Hum Genet. 2000 Oct;67(4):788-92. Epub 2000 Sep 8. Review. No abstract available.

25.

Pre-messenger RNA processing factors in the Drosophila genome.

Mount SM, Salz HK.

J Cell Biol. 2000 Jul 24;150(2):F37-44. Review. No abstract available.

26.

The genome sequence of Drosophila melanogaster.

Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF, George RA, Lewis SE, Richards S, Ashburner M, Henderson SN, Sutton GG, Wortman JR, Yandell MD, Zhang Q, Chen LX, Brandon RC, Rogers YH, Blazej RG, Champe M, Pfeiffer BD, Wan KH, Doyle C, Baxter EG, Helt G, Nelson CR, Gabor GL, Abril JF, Agbayani A, An HJ, Andrews-Pfannkoch C, Baldwin D, Ballew RM, Basu A, Baxendale J, Bayraktaroglu L, Beasley EM, Beeson KY, Benos PV, Berman BP, Bhandari D, Bolshakov S, Borkova D, Botchan MR, Bouck J, Brokstein P, Brottier P, Burtis KC, Busam DA, Butler H, Cadieu E, Center A, Chandra I, Cherry JM, Cawley S, Dahlke C, Davenport LB, Davies P, de Pablos B, Delcher A, Deng Z, Mays AD, Dew I, Dietz SM, Dodson K, Doup LE, Downes M, Dugan-Rocha S, Dunkov BC, Dunn P, Durbin KJ, Evangelista CC, Ferraz C, Ferriera S, Fleischmann W, Fosler C, Gabrielian AE, Garg NS, Gelbart WM, Glasser K, Glodek A, Gong F, Gorrell JH, Gu Z, Guan P, Harris M, Harris NL, Harvey D, Heiman TJ, Hernandez JR, Houck J, Hostin D, Houston KA, Howland TJ, Wei MH, Ibegwam C, Jalali M, Kalush F, Karpen GH, Ke Z, Kennison JA, Ketchum KA, Kimmel BE, Kodira CD, Kraft C, Kravitz S, Kulp D, Lai Z, Lasko P, Lei Y, Levitsky AA, Li J, Li Z, Liang Y, Lin X, Liu X, Mattei B, McIntosh TC, McLeod MP, McPherson D, Merkulov G, Milshina NV, Mobarry C, Morris J, Moshrefi A, Mount SM, Moy M, Murphy B, Murphy L, Muzny DM, Nelson DL, Nelson DR, Nelson KA, Nixon K, Nusskern DR, Pacleb JM, Palazzolo M, Pittman GS, Pan S, Pollard J, Puri V, Reese MG, Reinert K, Remington K, Saunders RD, Scheeler F, Shen H, Shue BC, Sidén-Kiamos I, Simpson M, Skupski MP, Smith T, Spier E, Spradling AC, Stapleton M, Strong R, Sun E, Svirskas R, Tector C, Turner R, Venter E, Wang AH, Wang X, Wang ZY, Wassarman DA, Weinstock GM, Weissenbach J, Williams SM, WoodageT, Worley KC, Wu D, Yang S, Yao QA, Ye J, Yeh RF, Zaveri JS, Zhan M, Zhang G, Zhao Q, Zheng L, Zheng XH, Zhong FN, Zhong W, Zhou X, Zhu S, Zhu X, Smith HO, Gibbs RA, Myers EW, Rubin GM, Venter JC.

Science. 2000 Mar 24;287(5461):2185-95.

PMID:
10731132
27.

Expanding the definition of informational suppression.

Mount SM, Anderson P.

Trends Genet. 2000 Apr;16(4):157. No abstract available.

PMID:
10729829
28.
29.

Ribosomal RNA: small nucleolar RNAs make their mark.

Peculis BA, Mount SM.

Curr Biol. 1996 Nov 1;6(11):1413-5. Review.

30.

AT-AC introns: an ATtACk on dogma.

Mount SM.

Science. 1996 Mar 22;271(5256):1690-2. Review. No abstract available.

PMID:
8596928
32.
33.

Suppressor U1 snRNAs in Drosophila.

Lo PC, Roy D, Mount SM.

Genetics. 1994 Oct;138(2):365-78.

34.
35.

Species-specific signals for the splicing of a short Drosophila intron in vitro.

Guo M, Lo PC, Mount SM.

Mol Cell Biol. 1993 Feb;13(2):1104-18.

36.

[Localization of E(wa) in Drosophila melanogaster using rearrangement].

Peng X, Mount SM.

Yi Chuan Xue Bao. 1993;20(1):19-25. Chinese.

PMID:
8507505
37.

Splicing signals in Drosophila: intron size, information content, and consensus sequences.

Mount SM, Burks C, Hertz G, Stormo GD, White O, Fields C.

Nucleic Acids Res. 1992 Aug 25;20(16):4255-62.

38.

Polyadenylylation in copia requires unusually distant upstream sequences.

Kurkulos M, Weinberg JM, Pepling ME, Mount SM.

Proc Natl Acad Sci U S A. 1991 Apr 15;88(8):3038-42.

39.
40.
42.

Sequence of a cDNA from the Drosophila melanogaster white gene.

Pepling M, Mount SM.

Nucleic Acids Res. 1990 Mar 25;18(6):1633. No abstract available.

44.

Sequence similarity.

Mount SM.

Nature. 1987 Feb 5-11;325(6104):487. No abstract available.

PMID:
3100960
46.

Splicing of messenger RNA precursors is inhibited by antisera to small nuclear ribonucleoprotein.

Padgett RA, Mount SM, Steitz JA, Sharp PA.

Cell. 1983 Nov;35(1):101-7.

PMID:
6194895
47.

RNA processing. Sequences that signal where to splice.

Mount SM.

Nature. 1983 Jul 28-Aug 3;304(5924):309-10. No abstract available.

PMID:
6348551
48.

The U1 small nuclear RNA-protein complex selectively binds a 5' splice site in vitro.

Mount SM, Pettersson I, Hinterberger M, Karmas A, Steitz JA.

Cell. 1983 Jun;33(2):509-18.

PMID:
6190573
50.

Small ribonucleoproteins from eukaryotes: structures and roles in RNA biogenesis.

Steitz JA, Wolin SL, Rinke J, Pettersson I, Mount SM, Lerner EA, Hinterberger M, Gottlieb E.

Cold Spring Harb Symp Quant Biol. 1983;47 Pt 2:893-900. No abstract available.

PMID:
6222869

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