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Items: 1 to 50 of 55

1.

Recombination, meiotic expression and human codon usage.

Pouyet F, Mouchiroud D, Duret L, Sémon M.

Elife. 2017 Aug 15;6. pii: e27344. doi: 10.7554/eLife.27344.

2.

SENCA: A Multilayered Codon Model to Study the Origins and Dynamics of Codon Usage.

Pouyet F, Bailly-Bechet M, Mouchiroud D, Guéguen L.

Genome Biol Evol. 2016 Aug 25;8(8):2427-41. doi: 10.1093/gbe/evw165.

3.

The red queen model of recombination hotspots evolution in the light of archaic and modern human genomes.

Lesecque Y, Glémin S, Lartillot N, Mouchiroud D, Duret L.

PLoS Genet. 2014 Nov 13;10(11):e1004790. doi: 10.1371/journal.pgen.1004790. eCollection 2014 Nov.

4.

GC-biased gene conversion in yeast is specifically associated with crossovers: molecular mechanisms and evolutionary significance.

Lesecque Y, Mouchiroud D, Duret L.

Mol Biol Evol. 2013 Jun;30(6):1409-19. doi: 10.1093/molbev/mst056. Epub 2013 Mar 16.

5.

The sex-specific impact of meiotic recombination on nucleotide composition.

Popa A, Samollow P, Gautier C, Mouchiroud D.

Genome Biol Evol. 2012;4(3):412-22. doi: 10.1093/gbe/evs023. Epub 2012 Mar 13.

6.

Meiotic recombination favors the spreading of deleterious mutations in human populations.

Necşulea A, Popa A, Cooper DN, Stenson PD, Mouchiroud D, Gautier C, Duret L.

Hum Mutat. 2011 Feb;32(2):198-206. doi: 10.1002/humu.21407. Epub 2011 Jan 25.

7.

Testing the recent theories for the origin of the hermaphrodite flower by comparison of the transcriptomes of gymnosperms and angiosperms.

Tavares R, Cagnon M, Negrutiu I, Mouchiroud D.

BMC Evol Biol. 2010 Aug 3;10:240. doi: 10.1186/1471-2148-10-240.

8.

DigiPINS: a database for vertebrate exonic single nucleotide polymorphisms and its application to cancer association studies.

Navratil V, Penel S, Delmotte S, Mouchiroud D, Gautier C, Aouacheria A.

Biochimie. 2008 Apr;90(4):563-9. Epub 2007 Sep 29.

PMID:
17988782
9.

Unexpected observations after mapping LongSAGE tags to the human genome.

Keime C, Sémon M, Mouchiroud D, Duret L, Gandrillon O.

BMC Bioinformatics. 2007 May 15;8:154.

10.

In silico whole-genome screening for cancer-related single-nucleotide polymorphisms located in human mRNA untranslated regions.

Aouacheria A, Navratil V, López-Pérez R, Gutiérrez NC, Churkin A, Barash D, Mouchiroud D, Gautier C.

BMC Genomics. 2007 Jan 3;8:2.

11.

GC content evolution of the human and mouse genomes: insights from the study of processed pseudogenes in regions of different recombination rates.

Khelifi A, Meunier J, Duret L, Mouchiroud D.

J Mol Evol. 2006 Jun;62(6):745-52. Epub 2006 Apr 28.

PMID:
16752212
12.

Bioinformatic screening of human ESTs for differentially expressed genes in normal and tumor tissues.

Aouacheria A, Navratil V, Barthelaix A, Mouchiroud D, Gautier C.

BMC Genomics. 2006 Apr 26;7:94.

13.

Physiological oxygenation status is required for fully differentiated phenotype in kidney cortex proximal tubules.

de Laplanche E, Gouget K, Cléris G, Dragounoff F, Demont J, Morales A, Bezin L, Godinot C, Perrière G, Mouchiroud D, Simonnet H.

Am J Physiol Renal Physiol. 2006 Oct;291(4):F750-60. Epub 2006 Apr 4.

14.

In silico whole-genome scanning of cancer-associated nonsynonymous SNPs and molecular characterization of a dynein light chain tumour variant.

Aouacheria A, Navratil V, Wen W, Jiang M, Mouchiroud D, Gautier C, Gouy M, Zhang M.

Oncogene. 2005 Sep 8;24(40):6133-42.

PMID:
15897869
15.

A gradual process of recombination restriction in the evolutionary history of the sex chromosomes in dioecious plants.

Nicolas M, Marais G, Hykelova V, Janousek B, Laporte V, Vyskot B, Mouchiroud D, Negrutiu I, Charlesworth D, Monéger F.

PLoS Biol. 2005 Jan;3(1):e4. Epub 2004 Dec 21.

16.

HOPPSIGEN: a database of human and mouse processed pseudogenes.

Khelifi A, Duret L, Mouchiroud D.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D59-66. Erratum in: Nucleic Acids Res. 2005;33(1):448. Adel, Khelifi [corrected to Khelifi, Adel]; Laurent, Duret [corrected to Durent, Laurent]; Dominique, Mouchiroud [corrected to Mouchiroud, Dominique].

17.

Relationship between gene expression and GC-content in mammals: statistical significance and biological relevance.

Sémon M, Mouchiroud D, Duret L.

Hum Mol Genet. 2005 Feb 1;14(3):421-7. Epub 2004 Dec 8.

PMID:
15590696
18.

Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries.

Keime C, Damiola F, Mouchiroud D, Duret L, Gandrillon O.

BMC Bioinformatics. 2004 Oct 6;5:143.

19.

Neutral effect of recombination on base composition in Drosophila.

Marais G, Mouchiroud D, Duret L.

Genet Res. 2003 Apr;81(2):79-87.

PMID:
12872909
20.

Vanishing GC-rich isochores in mammalian genomes.

Duret L, Semon M, Piganeau G, Mouchiroud D, Galtier N.

Genetics. 2002 Dec;162(4):1837-47.

21.
22.

Expected relationship between the silent substitution rate and the GC content: implications for the evolution of isochores.

Piganeau G, Mouchiroud D, Duret L, Gautier C.

J Mol Evol. 2002 Jan;54(1):129-33.

PMID:
11734906
23.

GC-content evolution in mammalian genomes: the biased gene conversion hypothesis.

Galtier N, Piganeau G, Mouchiroud D, Duret L.

Genetics. 2001 Oct;159(2):907-11. No abstract available.

24.

Determinants of CpG islands: expression in early embryo and isochore structure.

Ponger L, Duret L, Mouchiroud D.

Genome Res. 2001 Nov;11(11):1854-60.

25.

High evolutionary rates in nuclear genes of squamates.

Hughes S, Mouchiroud D.

J Mol Evol. 2001 Jul;53(1):70-6.

PMID:
11683325
26.

Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes.

Marais G, Mouchiroud D, Duret L.

Proc Natl Acad Sci U S A. 2001 May 8;98(10):5688-92. Epub 2001 Apr 24.

27.

Nuclear gene LCAT supports rodent monophyly.

Robinson-Rechavi M, Ponger L, Mouchiroud D.

Mol Biol Evol. 2000 Sep;17(9):1410-2. No abstract available.

PMID:
10960041
28.

Nature and structure of human genes that generate retropseudogenes.

Gonçalves I, Duret L, Mouchiroud D.

Genome Res. 2000 May;10(5):672-8.

29.
30.

Gene size reduction in the bacterial aphid endosymbiont, Buchnera.

Charles H, Mouchiroud D, Lobry J, Gonçalves I, Rahbe Y.

Mol Biol Evol. 1999 Dec;16(12):1820-2. No abstract available.

PMID:
10605125
31.

Warm-blooded isochore structure in Nile crocodile and turtle.

Hughes S, Zelus D, Mouchiroud D.

Mol Biol Evol. 1999 Nov;16(11):1521-7.

PMID:
10555283
32.

JaDis: computing distances between nucleic acid sequences.

Gonçalves I, Robinson M, Perrière G, Mouchiroud D.

Bioinformatics. 1999 May;15(5):424-5.

PMID:
10366663
33.
34.

Isochore evolution in mammals: a human-like ancestral structure.

Galtier N, Mouchiroud D.

Genetics. 1998 Dec;150(4):1577-84.

35.

Sensitivity of the relative-rate test to taxonomic sampling.

Robinson M, Gouy M, Gautier C, Mouchiroud D.

Mol Biol Evol. 1998 Sep;15(9):1091-8.

PMID:
9729873
36.

Impact of changes in GC content on the silent molecular clock in murids.

Mouchiroud D, Robinson M, Gautier C.

Gene. 1997 Dec 31;205(1-2):317-22.

PMID:
9461406
37.

Molecular phylogeny of rodents, with special emphasis on murids: evidence from nuclear gene LCAT.

Robinson M, Catzeflis F, Briolay J, Mouchiroud D.

Mol Phylogenet Evol. 1997 Dec;8(3):423-34.

PMID:
9417899
38.

Evolution of isochores in rodents.

Robinson M, Gautier C, Mouchiroud D.

Mol Biol Evol. 1997 Aug;14(8):823-8.

PMID:
9254920
39.

The major compositional transitions in the vertebrate genome.

Bernardi G, Hughes S, Mouchiroud D.

J Mol Evol. 1997;44 Suppl 1:S44-51.

PMID:
9071011
40.

Human coding and noncoding DNA: compositional correlations.

Clay O, Cacciò S, Zoubak S, Mouchiroud D, Bernardi G.

Mol Phylogenet Evol. 1996 Feb;5(1):2-12.

PMID:
8673288
41.

Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores.

Duret L, Mouchiroud D, Gautier C.

J Mol Evol. 1995 Mar;40(3):308-17.

PMID:
7723057
42.
43.

HOVERGEN: a database of homologous vertebrate genes.

Duret L, Mouchiroud D, Gouy M.

Nucleic Acids Res. 1994 Jun 25;22(12):2360-5.

44.

Silent substitutions in mammalian genomes and their evolutionary implications.

Bernardi G, Mouchiroud D, Gautier C.

J Mol Evol. 1993 Dec;37(6):583-9.

PMID:
8114111
45.

Compositional properties of coding sequences and mammalian phylogeny.

Mouchiroud D, Bernardi G.

J Mol Evol. 1993 Aug;37(2):109-16.

PMID:
8411199
46.

Insect muscle actins differ distinctly from invertebrate and vertebrate cytoplasmic actins.

Mounier N, Gouy M, Mouchiroud D, Prudhomme JC.

J Mol Evol. 1992 May;34(5):406-15.

PMID:
1602494
47.

Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins.

D'Onofrio G, Mouchiroud D, Aïssani B, Gautier C, Bernardi G.

J Mol Evol. 1991 Jun;32(6):504-10.

PMID:
1908021
48.

The compositional properties of human genes.

Aïssani B, D'Onofrio G, Mouchiroud D, Gardiner K, Gautier C, Bernardi G.

J Mol Evol. 1991 Jun;32(6):493-503.

PMID:
1908020
49.

The distribution of genes in the human genome.

Mouchiroud D, D'Onofrio G, Aïssani B, Macaya G, Gautier C, Bernardi G.

Gene. 1991 Apr;100:181-7.

PMID:
2055469
50.

Codon usage changes and sequence dissimilarity between human and rat.

Mouchiroud D, Gautier C.

J Mol Evol. 1990 Aug;31(2):81-91.

PMID:
2120453

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