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Items: 34

1.

Gene expression variability: the other dimension in transcriptome analysis.

de Jong TV, Moshkin YM, Guryev V.

Physiol Genomics. 2019 May 1;51(5):145-158. doi: 10.1152/physiolgenomics.00128.2018. Epub 2019 Mar 15.

PMID:
30875273
2.

TNFα is responsible for the canonical offspring number-size trade-off.

Maslennikova SO, Gerlinskaya LA, Kontsevaya GV, Anisimova MV, Nedospasov SA, Feofanova NA, Moshkin MP, Moshkin YM.

Sci Rep. 2019 Mar 14;9(1):4568. doi: 10.1038/s41598-019-38844-9.

3.

Phenotypic variations in transferred progeny due to genotype of surrogate mother.

Gerlinskaya LA, Litvinova EA, Kontsevaya GV, Feofanova NA, Achasova KM, Anisimova MV, Maslennikova SO, Zolotykh MA, Moshkin YM, Moshkin MP.

Mol Hum Reprod. 2019 Feb 1;25(2):88-99. doi: 10.1093/molehr/gay052.

PMID:
30445548
4.

Guanine quadruplex structures localize to heterochromatin.

Hoffmann RF, Moshkin YM, Mouton S, Grzeschik NA, Kalicharan RD, Kuipers J, Wolters AHG, Nishida K, Romashchenko AV, Postberg J, Lipps H, Berezikov E, Sibon OCM, Giepmans BNG, Lansdorp PM.

Nucleic Acids Res. 2017 Jun 2;45(10):6253. doi: 10.1093/nar/gkx301. No abstract available.

5.

Nanoparticles Associate with Intrinsically Disordered RNA-Binding Proteins.

Romashchenko AV, Kan TW, Petrovski DV, Gerlinskaya LA, Moshkin MP, Moshkin YM.

ACS Nano. 2017 Feb 28;11(2):1328-1339. doi: 10.1021/acsnano.6b05992. Epub 2017 Jan 31.

PMID:
28122180
6.

The silent information regulator 1 (Sirt1) is a positive regulator of the Notch pathway in Drosophila.

Horvath M, Mihajlovic Z, Slaninova V, Perez-Gomez R, Moshkin Y, Krejci A.

Biochem J. 2016 Nov 15;473(22):4129-4143. Epub 2016 Sep 13.

PMID:
27623778
7.

Correction: Repressive LTR Nucleosome Positioning by the BAF Complex Is Required for HIV Latency.

Rafati H, Parra M, Hakre S, Moshkin Y, Verdin E, Mahmoudi T.

PLoS Biol. 2015 Nov 16;13(11):e1002302. doi: 10.1371/journal.pbio.1002302. eCollection 2015 Nov.

8.

A Testis-Specific Chaperone and the Chromatin Remodeler ISWI Mediate Repackaging of the Paternal Genome.

Doyen CM, Chalkley GE, Voets O, Bezstarosti K, Demmers JA, Moshkin YM, Verrijzer CP.

Cell Rep. 2015 Nov 17;13(7):1310-1318. doi: 10.1016/j.celrep.2015.10.010. Epub 2015 Nov 5.

9.

Correction to 'nasal aerodynamics protects brain and lung from inhaled dust in subterranean diggers, Ellobius talpinus'.

Moshkin MP, Petrovski DV, Akulov AE, Romashchenko AV, Gerlinskaya LA, Ganimedov VL, Muchnaya MI, Sadovsky AS, Koptyug IV, Savelov AA, Yu Troitsky S, Moshkin YM, Bukhtiyarov VI, Kolchanov NA, Sagdeev RZ, Fomin VM.

Proc Biol Sci. 2015 Oct 22;282(1817):20152308. doi: 10.1098/rspb.2015.2308. No abstract available.

10.

Modulation of embryonic development due to mating with immunised males.

Gerlinskaya LA, Maslennikova SO, Anisimova MV, Feofanova NA, Zavjalov EL, Kontsevaya GV, Moshkin YM, Moshkin MP.

Reprod Fertil Dev. 2017 Mar;29(3):565-574. doi: 10.1071/RD15173.

PMID:
26434602
11.

Genome-wide profiling of nucleosome sensitivity and chromatin accessibility in Drosophila melanogaster.

Chereji RV, Kan TW, Grudniewska MK, Romashchenko AV, Berezikov E, Zhimulev IF, Guryev V, Morozov AV, Moshkin YM.

Nucleic Acids Res. 2016 Feb 18;44(3):1036-51. doi: 10.1093/nar/gkv978. Epub 2015 Oct 1.

12.

Guanine quadruplex structures localize to heterochromatin.

Hoffmann RF, Moshkin YM, Mouton S, Grzeschik NA, Kalicharan RD, Kuipers J, Wolters AH, Nishida K, Romashchenko AV, Postberg J, Lipps H, Berezikov E, Sibon OC, Giepmans BN, Lansdorp PM.

Nucleic Acids Res. 2016 Jan 8;44(1):152-63. doi: 10.1093/nar/gkv900. Epub 2015 Sep 17. Erratum in: Nucleic Acids Res. 2017 Jun 2;45(10):6253.

13.

Histone chaperone NAP1 mediates sister chromatid resolution by counteracting protein phosphatase 2A.

Moshkin YM, Doyen CM, Kan TW, Chalkley GE, Sap K, Bezstarosti K, Demmers JA, Ozgur Z, van Ijcken WF, Verrijzer CP.

PLoS Genet. 2013;9(9):e1003719. doi: 10.1371/journal.pgen.1003719. Epub 2013 Sep 26.

14.

Subunits of the histone chaperone CAF1 also mediate assembly of protamine-based chromatin.

Doyen CM, Moshkin YM, Chalkley GE, Bezstarosti K, Demmers JA, Rathke C, Renkawitz-Pohl R, Verrijzer CP.

Cell Rep. 2013 Jul 11;4(1):59-65. doi: 10.1016/j.celrep.2013.06.002. Epub 2013 Jun 27.

15.

Metabolic enzyme IMPDH is also a transcription factor regulated by cellular state.

Kozhevnikova EN, van der Knaap JA, Pindyurin AV, Ozgur Z, van Ijcken WF, Moshkin YM, Verrijzer CP.

Mol Cell. 2012 Jul 13;47(1):133-9. doi: 10.1016/j.molcel.2012.04.030. Epub 2012 May 31.

16.

Repressive LTR nucleosome positioning by the BAF complex is required for HIV latency.

Rafati H, Parra M, Hakre S, Moshkin Y, Verdin E, Mahmoudi T.

PLoS Biol. 2011 Nov;9(11):e1001206. doi: 10.1371/journal.pbio.1001206. Epub 2011 Nov 29. Erratum in: PLoS Biol. 2015 Nov;13(11):e1002302.

17.

Remodelers organize cellular chromatin by counteracting intrinsic histone-DNA sequence preferences in a class-specific manner.

Moshkin YM, Chalkley GE, Kan TW, Reddy BA, Ozgur Z, van Ijcken WF, Dekkers DH, Demmers JA, Travers AA, Verrijzer CP.

Mol Cell Biol. 2012 Feb;32(3):675-88. doi: 10.1128/MCB.06365-11. Epub 2011 Nov 28.

18.

Drosophila transcription factor Tramtrack69 binds MEP1 to recruit the chromatin remodeler NuRD.

Reddy BA, Bajpe PK, Bassett A, Moshkin YM, Kozhevnikova E, Bezstarosti K, Demmers JA, Travers AA, Verrijzer CP.

Mol Cell Biol. 2010 Nov;30(21):5234-44. doi: 10.1128/MCB.00266-10. Epub 2010 Aug 23.

19.

Phosphorylation-mediated control of histone chaperone ASF1 levels by Tousled-like kinases.

Pilyugin M, Demmers J, Verrijzer CP, Karch F, Moshkin YM.

PLoS One. 2009 Dec 16;4(12):e8328. doi: 10.1371/journal.pone.0008328.

20.

Biosynthetic enzyme GMP synthetase cooperates with ubiquitin-specific protease 7 in transcriptional regulation of ecdysteroid target genes.

van der Knaap JA, Kozhevnikova E, Langenberg K, Moshkin YM, Verrijzer CP.

Mol Cell Biol. 2010 Feb;30(3):736-44. doi: 10.1128/MCB.01121-09. Epub 2009 Dec 7.

21.

Histone chaperones ASF1 and NAP1 differentially modulate removal of active histone marks by LID-RPD3 complexes during NOTCH silencing.

Moshkin YM, Kan TW, Goodfellow H, Bezstarosti K, Maeda RK, Pilyugin M, Karch F, Bray SJ, Demmers JA, Verrijzer CP.

Mol Cell. 2009 Sep 24;35(6):782-93. doi: 10.1016/j.molcel.2009.07.020. Erratum in: Mol Cell. 2013 Jul 11;51(1):128-9.

22.

In vivo stable isotope labeling of fruit flies reveals post-transcriptional regulation in the maternal-to-zygotic transition.

Gouw JW, Pinkse MW, Vos HR, Moshkin Y, Verrijzer CP, Heck AJ, Krijgsveld J.

Mol Cell Proteomics. 2009 Jul;8(7):1566-78. doi: 10.1074/mcp.M900114-MCP200. Epub 2009 Mar 24.

23.

dKDM2 couples histone H2A ubiquitylation to histone H3 demethylation during Polycomb group silencing.

Lagarou A, Mohd-Sarip A, Moshkin YM, Chalkley GE, Bezstarosti K, Demmers JA, Verrijzer CP.

Genes Dev. 2008 Oct 15;22(20):2799-810. doi: 10.1101/gad.484208.

24.

The transcriptional coactivator SAYP is a trithorax group signature subunit of the PBAP chromatin remodeling complex.

Chalkley GE, Moshkin YM, Langenberg K, Bezstarosti K, Blastyak A, Gyurkovics H, Demmers JA, Verrijzer CP.

Mol Cell Biol. 2008 May;28(9):2920-9. doi: 10.1128/MCB.02217-07. Epub 2008 Feb 25.

25.

Gene-specific targeting of the histone chaperone asf1 to mediate silencing.

Goodfellow H, Krejcí A, Moshkin Y, Verrijzer CP, Karch F, Bray SJ.

Dev Cell. 2007 Oct;13(4):593-600.

26.

Functional differentiation of SWI/SNF remodelers in transcription and cell cycle control.

Moshkin YM, Mohrmann L, van Ijcken WF, Verrijzer CP.

Mol Cell Biol. 2007 Jan;27(2):651-61. Epub 2006 Nov 13.

27.

Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

Simonis M, Klous P, Splinter E, Moshkin Y, Willemsen R, de Wit E, van Steensel B, de Laat W.

Nat Genet. 2006 Nov;38(11):1348-54. Epub 2006 Oct 8.

PMID:
17033623
28.

Probing long-distance regulatory interactions in the Drosophila melanogaster bithorax complex using Dam identification.

Cléard F, Moshkin Y, Karch F, Maeda RK.

Nat Genet. 2006 Aug;38(8):931-5. Epub 2006 Jul 2.

PMID:
16823379
29.

GMP synthetase stimulates histone H2B deubiquitylation by the epigenetic silencer USP7.

van der Knaap JA, Kumar BR, Moshkin YM, Langenberg K, Krijgsveld J, Heck AJ, Karch F, Verrijzer CP.

Mol Cell. 2005 Mar 4;17(5):695-707.

30.

Tousled-like kinase functions with the chromatin assembly pathway regulating nuclear divisions.

Carrera P, Moshkin YM, Gronke S, Sillje HH, Nigg EA, Jackle H, Karch F.

Genes Dev. 2003 Oct 15;17(20):2578-90.

31.

Histone chaperone ASF1 cooperates with the Brahma chromatin-remodelling machinery.

Moshkin YM, Armstrong JA, Maeda RK, Tamkun JW, Verrijzer P, Kennison JA, Karch F.

Genes Dev. 2002 Oct 15;16(20):2621-6.

32.

Microdissection and sequence analysis of pericentric heterochromatin from the Drosophila melanogastermutant Suppressor of Underreplication.

Moshkin YM, Belyakin SN, Rubtsov NB, Kokoza EB, Alekseyenko AA, Volkova EI, Belyaeva ES, Makunin IV, Spierer P, Zhimulev IF.

Chromosoma. 2002 Jul;111(2):114-25. Epub 2002 Apr 16.

PMID:
12111334
33.

The bithorax complex of Drosophila melanogaster: Underreplication and morphology in polytene chromosomes.

Moshkin YM, Alekseyenko AA, Semeshin VF, Spierer A, Spierer P, Makarevich GF, Belyaeva ES, Zhimulev IF.

Proc Natl Acad Sci U S A. 2001 Jan 16;98(2):570-4. Epub 2001 Jan 2.

34.

Su(UR)ES: a gene suppressing DNA underreplication in intercalary and pericentric heterochromatin of Drosophila melanogaster polytene chromosomes.

Belyaeva ES, Zhimulev IF, Volkova EI, Alekseyenko AA, Moshkin YM, Koryakov DE.

Proc Natl Acad Sci U S A. 1998 Jun 23;95(13):7532-7.

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