Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 172

1.

Learning unsupervised feature representations for single cell microscopy images with paired cell inpainting.

Lu AX, Kraus OZ, Cooper S, Moses AM.

PLoS Comput Biol. 2019 Sep 3;15(9):e1007348. doi: 10.1371/journal.pcbi.1007348. eCollection 2019 Sep.

2.

Proteome-wide signatures of function in highly diverged intrinsically disordered regions.

Zarin T, Strome B, Nguyen Ba AN, Alberti S, Forman-Kay JD, Moses AM.

Elife. 2019 Jul 2;8. pii: e46883. doi: 10.7554/eLife.46883.

3.

YeastSpotter: accurate and parameter-free web segmentation for microscopy images of yeast cells.

Lu AX, Zarin T, Hsu IS, Moses AM.

Bioinformatics. 2019 Nov 1;35(21):4525-4527. doi: 10.1093/bioinformatics/btz402.

4.

Variational infinite heterogeneous mixture model for semi-supervised clustering of heart enhancers.

Mehdi TF, Singh G, Mitchell JA, Moses AM.

Bioinformatics. 2019 Sep 15;35(18):3232-3239. doi: 10.1093/bioinformatics/btz064.

5.

A Noisy Analog-to-Digital Converter Connects Cytosolic Calcium Bursts to Transcription Factor Nuclear Localization Pulses in Yeast.

Hsu IS, Strome B, Plotnikov S, Moses AM.

G3 (Bethesda). 2019 Feb 7;9(2):561-570. doi: 10.1534/g3.118.200841.

6.

Short linear motifs in intrinsically disordered regions modulate HOG signaling capacity.

Strome B, Hsu IS, Li Cheong Man M, Zarin T, Nguyen Ba A, Moses AM.

BMC Syst Biol. 2018 Jul 3;12(1):75. doi: 10.1186/s12918-018-0597-3.

7.

Integrating images from multiple microscopy screens reveals diverse patterns of change in the subcellular localization of proteins.

Lu AX, Chong YT, Hsu IS, Strome B, Handfield LF, Kraus O, Andrews BJ, Moses AM.

Elife. 2018 Apr 5;7. pii: e31872. doi: 10.7554/eLife.31872.

8.

NoLogo: a new statistical model highlights the diversity and suggests new classes of Crm1-dependent nuclear export signals.

Liku ME, Legere EA, Moses AM.

BMC Bioinformatics. 2018 Feb 27;19(1):65. doi: 10.1186/s12859-018-2076-7.

9.

Parallel reorganization of protein function in the spindle checkpoint pathway through evolutionary paths in the fitness landscape that appear neutral in laboratory experiments.

Nguyen Ba AN, Strome B, Osman S, Legere EA, Zarin T, Moses AM.

PLoS Genet. 2017 Apr 14;13(4):e1006735. doi: 10.1371/journal.pgen.1006735. eCollection 2017 Apr.

10.

Selection maintains signaling function of a highly diverged intrinsically disordered region.

Zarin T, Tsai CN, Nguyen Ba AN, Moses AM.

Proc Natl Acad Sci U S A. 2017 Feb 21;114(8):E1450-E1459. doi: 10.1073/pnas.1614787114. Epub 2017 Feb 6.

11.

Functional Analysis of Kinases and Transcription Factors in Saccharomyces cerevisiae Using an Integrated Overexpression Library.

Youn JY, Friesen H, Nguyen Ba AN, Liang W, Messier V, Cox MJ, Moses AM, Andrews B.

G3 (Bethesda). 2017 Mar 10;7(3):911-921. doi: 10.1534/g3.116.038471.

12.

Introduction of Premature Stop Codons as an Evolutionary Strategy To Rescue Signaling Network Function.

Kompella PS, Moses AM, Peisajovich SG.

ACS Synth Biol. 2017 Mar 17;6(3):446-454. doi: 10.1021/acssynbio.6b00142. Epub 2016 Dec 27.

PMID:
27935292
13.

An Unsupervised kNN Method to Systematically Detect Changes in Protein Localization in High-Throughput Microscopy Images.

Lu AX, Moses AM.

PLoS One. 2016 Jul 21;11(7):e0158712. doi: 10.1371/journal.pone.0158712. eCollection 2016.

14.

Decreased Transcription Factor Binding Levels Nearby Primate Pseudogenes Suggest Regulatory Degeneration.

Douglas GM, Wilson MD, Moses AM.

Mol Biol Evol. 2016 Jun;33(6):1478-85. doi: 10.1093/molbev/msw030. Epub 2016 Feb 16.

15.

Short linear motifs - ex nihilo evolution of protein regulation.

Davey NE, Cyert MS, Moses AM.

Cell Commun Signal. 2015 Nov 21;13:43. doi: 10.1186/s12964-015-0120-z. Review.

16.

Computational learning on specificity-determining residue-nucleotide interactions.

Wong KC, Li Y, Peng C, Moses AM, Zhang Z.

Nucleic Acids Res. 2015 Dec 2;43(21):10180-9. doi: 10.1093/nar/gkv1134. Epub 2015 Nov 2.

17.

Polymorphism Analysis Reveals Reduced Negative Selection and Elevated Rate of Insertions and Deletions in Intrinsically Disordered Protein Regions.

Khan T, Douglas GM, Patel P, Nguyen Ba AN, Moses AM.

Genome Biol Evol. 2015 Jun 4;7(6):1815-26. doi: 10.1093/gbe/evv105.

18.

The Structure of an NDR/LATS Kinase-Mob Complex Reveals a Novel Kinase-Coactivator System and Substrate Docking Mechanism.

Gógl G, Schneider KD, Yeh BJ, Alam N, Nguyen Ba AN, Moses AM, Hetényi C, Reményi A, Weiss EL.

PLoS Biol. 2015 May 12;13(5):e1002146. doi: 10.1371/journal.pbio.1002146. eCollection 2015 May.

19.

Detecting functional divergence after gene duplication through evolutionary changes in posttranslational regulatory sequences.

Nguyen Ba AN, Strome B, Hua JJ, Desmond J, Gagnon-Arsenault I, Weiss EL, Landry CR, Moses AM.

PLoS Comput Biol. 2014 Dec 4;10(12):e1003977. doi: 10.1371/journal.pcbi.1003977. eCollection 2014 Dec.

20.

Local statistics allow quantification of cell-to-cell variability from high-throughput microscope images.

Handfield LF, Strome B, Chong YT, Moses AM.

Bioinformatics. 2015 Mar 15;31(6):940-7. doi: 10.1093/bioinformatics/btu759. Epub 2014 Nov 14.

21.

Turnover of protein phosphorylation evolving under stabilizing selection.

Landry CR, Freschi L, Zarin T, Moses AM.

Front Genet. 2014 Jul 23;5:245. doi: 10.3389/fgene.2014.00245. eCollection 2014. Review.

22.

Insights into molecular evolution from yeast genomics.

Zarin T, Moses AM.

Yeast. 2014 Jul;31(7):233-41. doi: 10.1002/yea.3018. Epub 2014 May 26. Review.

23.
24.

Bone quality assessment in type 2 diabetes mellitus.

Dhaliwal R, Cibula D, Ghosh C, Weinstock RS, Moses AM.

Osteoporos Int. 2014 Jul;25(7):1969-73. doi: 10.1007/s00198-014-2704-7. Epub 2014 Apr 10.

PMID:
24718377
25.

A high-definition view of functional genetic variation from natural yeast genomes.

Bergström A, Simpson JT, Salinas F, Barré B, Parts L, Zia A, Nguyen Ba AN, Moses AM, Louis EJ, Mustonen V, Warringer J, Durbin R, Liti G.

Mol Biol Evol. 2014 Apr;31(4):872-88. doi: 10.1093/molbev/msu037. Epub 2014 Jan 14.

26.

Rethinking the portrayal of deaf characters in children's picture books.

Golos DB, Moses AM.

Front Psychol. 2013 Nov 27;4:889. doi: 10.3389/fpsyg.2013.00889. eCollection 2013. No abstract available.

27.

An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions.

Haudry A, Platts AE, Vello E, Hoen DR, Leclercq M, Williamson RJ, Forczek E, Joly-Lopez Z, Steffen JG, Hazzouri KM, Dewar K, Stinchcombe JR, Schoen DJ, Wang X, Schmutz J, Town CD, Edger PP, Pires JC, Schumaker KS, Jarvis DE, Mandáková T, Lysak MA, van den Bergh E, Schranz ME, Harrison PM, Moses AM, Bureau TE, Wright SI, Blanchette M.

Nat Genet. 2013 Aug;45(8):891-8. doi: 10.1038/ng.2684. Epub 2013 Jun 30.

PMID:
23817568
28.

Unsupervised clustering of subcellular protein expression patterns in high-throughput microscopy images reveals protein complexes and functional relationships between proteins.

Handfield LF, Chong YT, Simmons J, Andrews BJ, Moses AM.

PLoS Comput Biol. 2013;9(6):e1003085. doi: 10.1371/journal.pcbi.1003085. Epub 2013 Jun 13.

29.

Sequencing and annotation of the Ophiostoma ulmi genome.

Khoshraftar S, Hung S, Khan S, Gong Y, Tyagi V, Parkinson J, Sain M, Moses AM, Christendat D.

BMC Genomics. 2013 Mar 12;14:162. doi: 10.1186/1471-2164-14-162.

30.

High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome.

Liti G, Nguyen Ba AN, Blythe M, Müller CA, Bergström A, Cubillos FA, Dafhnis-Calas F, Khoshraftar S, Malla S, Mehta N, Siow CC, Warringer J, Moses AM, Louis EJ, Nieduszynski CA.

BMC Genomics. 2013 Jan 31;14:69. doi: 10.1186/1471-2164-14-69.

31.

Towards a theoretical understanding of false positives in DNA motif finding.

Zia A, Moses AM.

BMC Bioinformatics. 2012 Jun 27;13:151. doi: 10.1186/1471-2105-13-151.

32.

Development and treatment of tertiary hyperparathyroidism in patients with pseudohypoparathyroidism type 1B.

Neary NM, El-Maouche D, Hopkins R, Libutti SK, Moses AM, Weinstein LS.

J Clin Endocrinol Metab. 2012 Sep;97(9):3025-30. doi: 10.1210/jc.2012-1655. Epub 2012 Jun 26.

33.

Proteome-wide discovery of evolutionary conserved sequences in disordered regions.

Nguyen Ba AN, Yeh BJ, van Dyk D, Davidson AR, Andrews BJ, Weiss EL, Moses AM.

Sci Signal. 2012 Mar 13;5(215):rs1. doi: 10.1126/scisignal.2002515.

34.

Predicting kinase substrates using conservation of local motif density.

Lai AC, Nguyen Ba AN, Moses AM.

Bioinformatics. 2012 Apr 1;28(7):962-9. doi: 10.1093/bioinformatics/bts060. Epub 2012 Feb 1.

PMID:
22302575
35.

Representations of deaf characters in children's picture books.

Golos DB, Moses AM.

Am Ann Deaf. 2011 Summer;156(3):270-82.

PMID:
21941877
36.

Orbital inflammatory disease in a patient treated with zoledronate.

Kaur H, Uy C, Kelly J, Moses AM.

Endocr Pract. 2011 Jul-Aug;17(4):e101-3. doi: 10.4158/EP11081.CR.

PMID:
21803720
37.

Ranking insertion, deletion and nonsense mutations based on their effect on genetic information.

Zia A, Moses AM.

BMC Bioinformatics. 2011 Jul 22;12:299. doi: 10.1186/1471-2105-12-299.

38.

In vitro evolution goes deep.

Moses AM, Davidson AR.

Proc Natl Acad Sci U S A. 2011 May 17;108(20):8071-2. doi: 10.1073/pnas.1104843108. Epub 2011 May 6. No abstract available.

39.

A quantitative literature-curated gold standard for kinase-substrate pairs.

Sharifpoor S, Nguyen Ba AN, Youn JY, van Dyk D, Friesen H, Douglas AC, Kurat CF, Chong YT, Founk K, Moses AM, Andrews BJ.

Genome Biol. 2011;12(4):R39. doi: 10.1186/gb-2011-12-4-r39. Epub 2011 Apr 14. Erratum in: Genome Biol. 2012;13(5):417. Young, Ji-Young [corrected to Youn, Ji-Young].

40.

Modeling the evolution of a classic genetic switch.

Josephides C, Moses AM.

BMC Syst Biol. 2011 Feb 5;5:24. doi: 10.1186/1752-0509-5-24.

41.

Whole-genome analysis reveals that active heat shock factor binding sites are mostly associated with non-heat shock genes in Drosophila melanogaster.

Gonsalves SE, Moses AM, Razak Z, Robert F, Westwood JT.

PLoS One. 2011 Jan 14;6(1):e15934. doi: 10.1371/journal.pone.0015934.

42.

Polymorphism, divergence, and the role of recombination in Saccharomyces cerevisiae genome evolution.

Cutter AD, Moses AM.

Mol Biol Evol. 2011 May;28(5):1745-54. doi: 10.1093/molbev/msq356. Epub 2011 Jan 3.

PMID:
21199893
43.

Paget's disease of bone: the skeletal distribution, complications and quality of life as perceived by patients.

Seton M, Moses AM, Bode RK, Schwartz C.

Bone. 2011 Feb;48(2):281-5. doi: 10.1016/j.bone.2010.09.021. Epub 2010 Sep 19.

PMID:
20858558
44.

Moving from transcriptional to phospho-evolution: generalizing regulatory evolution?

Moses AM, Landry CR.

Trends Genet. 2010 Nov;26(11):462-7. doi: 10.1016/j.tig.2010.08.002.

PMID:
20817339
45.

Evolution of characterized phosphorylation sites in budding yeast.

Nguyen Ba AN, Moses AM.

Mol Biol Evol. 2010 Sep;27(9):2027-37. doi: 10.1093/molbev/msq090. Epub 2010 Apr 5.

PMID:
20368267
46.

Evidence for widespread adaptive evolution of gene expression in budding yeast.

Fraser HB, Moses AM, Schadt EE.

Proc Natl Acad Sci U S A. 2010 Feb 16;107(7):2977-82. doi: 10.1073/pnas.0912245107. Epub 2010 Jan 28.

47.
48.

Skin cancer meets vitamin D: the way forward for dermatology and public health.

Weinstock MA, Moses AM.

J Am Acad Dermatol. 2009 Oct;61(4):720-4. doi: 10.1016/j.jaad.2009.04.016. No abstract available.

PMID:
19751885
49.

NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction.

Nguyen Ba AN, Pogoutse A, Provart N, Moses AM.

BMC Bioinformatics. 2009 Jun 29;10:202. doi: 10.1186/1471-2105-10-202.

50.

Population genomics of domestic and wild yeasts.

Liti G, Carter DM, Moses AM, Warringer J, Parts L, James SA, Davey RP, Roberts IN, Burt A, Koufopanou V, Tsai IJ, Bergman CM, Bensasson D, O'Kelly MJ, van Oudenaarden A, Barton DB, Bailes E, Nguyen AN, Jones M, Quail MA, Goodhead I, Sims S, Smith F, Blomberg A, Durbin R, Louis EJ.

Nature. 2009 Mar 19;458(7236):337-41. doi: 10.1038/nature07743. Epub 2009 Feb 11.

Supplemental Content

Loading ...
Support Center