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Items: 1 to 50 of 108

1.

Altered Stool Microbiota of Infants with Cystic Fibrosis Shows a Reduction in Genera Associated with Immune Programming from Birth.

Antosca KM, Chernikova DA, Price CE, Ruoff KL, Li K, Guill MF, Sontag NR, Morrison HG, Hao S, Drumm ML, MacKenzie TA, Dorman DB, Feenan LM, Williams MA, Dessaint J, Yuan IH, Aldrich BJ, Moulton LA, Ting L, Martinez-Del Campo A, Stewart EJ, Karagas MR, O'Toole GA, Madan JC.

J Bacteriol. 2019 Jul 24;201(16). pii: e00274-19. doi: 10.1128/JB.00274-19. Print 2019 Aug 15.

PMID:
31209076
2.

Specific class of intrapartum antibiotics relates to maturation of the infant gut microbiota: a prospective cohort study.

Coker MO, Hoen AG, Dade E, Lundgren S, Li Z, Wong AD, Zens MS, Palys TJ, Morrison HG, Sogin ML, Baker ER, Karagas MR, Madan JC.

BJOG. 2019 Apr 21. doi: 10.1111/1471-0528.15799. [Epub ahead of print]

PMID:
31006170
3.

Electroactive Bacteria Associated With Stainless Steel Ennoblement in Seawater.

Trigodet F, Larché N, Morrison HG, Jebbar M, Thierry D, Maignien L.

Front Microbiol. 2019 Feb 7;10:170. doi: 10.3389/fmicb.2019.00170. eCollection 2019.

4.

Microbiome-based body fluid identification of samples exposed to indoor conditions.

Dobay A, Haas C, Fucile G, Downey N, Morrison HG, Kratzer A, Arora N.

Forensic Sci Int Genet. 2019 May;40:105-113. doi: 10.1016/j.fsigen.2019.02.010. Epub 2019 Feb 11.

PMID:
30785061
5.

Microbiome profiling in extremely acidic soils affected by hydrothermal fluids: the case of the Solfatara Crater (Campi Flegrei, southern Italy).

Crognale S, Venturi S, Tassi F, Rossetti S, Rashed H, Cabassi J, Capecchiacci F, Nisi B, Vaselli O, Morrison HG, Sogin ML, Fazi S.

FEMS Microbiol Ecol. 2018 Dec 1;94(12). doi: 10.1093/femsec/fiy190.

PMID:
30247697
6.

Sex-specific associations of infants' gut microbiome with arsenic exposure in a US population.

Hoen AG, Madan JC, Li Z, Coker M, Lundgren SN, Morrison HG, Palys T, Jackson BP, Sogin ML, Cottingham KL, Karagas MR.

Sci Rep. 2018 Aug 22;8(1):12627. doi: 10.1038/s41598-018-30581-9.

7.

Profiling of Bacterial and Fungal Microbial Communities in Cystic Fibrosis Sputum Using RNA.

Grahl N, Dolben EL, Filkins LM, Crocker AW, Willger SD, Morrison HG, Sogin ML, Ashare A, Gifford AH, Jacobs NJ, Schwartzman JD, Hogan DA.

mSphere. 2018 Aug 8;3(4). pii: e00292-18. doi: 10.1128/mSphere.00292-18.

8.

A common garden experiment with Porphyra umbilicalis (Rhodophyta) evaluates methods to study spatial differences in the macroalgal microbiome.

Quigley CTC, Morrison HG, Mendonça IR, Brawley SH.

J Phycol. 2018 Oct;54(5):653-664. doi: 10.1111/jpy.12763. Epub 2018 Aug 28.

PMID:
29981525
9.

Maternal diet during pregnancy is related with the infant stool microbiome in a delivery mode-dependent manner.

Lundgren SN, Madan JC, Emond JA, Morrison HG, Christensen BC, Karagas MR, Hoen AG.

Microbiome. 2018 Jul 5;6(1):109. doi: 10.1186/s40168-018-0490-8.

10.

The premature infant gut microbiome during the first 6 weeks of life differs based on gestational maturity at birth.

Chernikova DA, Madan JC, Housman ML, Zain-Ul-Abideen M, Lundgren SN, Morrison HG, Sogin ML, Williams SM, Moore JH, Karagas MR, Hoen AG.

Pediatr Res. 2018 Jul;84(1):71-79. doi: 10.1038/s41390-018-0022-z. Epub 2018 May 23.

11.

Complete Genome Sequence of Hyperthermophilic Archaeon Thermococcus sp. EXT12c, Isolated from the East Pacific Rise 9°N.

Courtine D, Alain K, Georges M, Bienvenu N, Morrison HG, Eren AM, Maignien L.

Genome Announc. 2017 Dec 14;5(50). pii: e01385-17. doi: 10.1128/genomeA.01385-17.

12.

Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics.

Lee STM, Kahn SA, Delmont TO, Shaiber A, Esen ÖC, Hubert NA, Morrison HG, Antonopoulos DA, Rubin DT, Eren AM.

Microbiome. 2017 May 4;5(1):50. doi: 10.1186/s40168-017-0270-x.

13.

Patient-Specific Bacteroides Genome Variants in Pouchitis.

Vineis JH, Ringus DL, Morrison HG, Delmont TO, Dalal S, Raffals LH, Antonopoulos DA, Rubin DT, Eren AM, Chang EB, Sogin ML.

MBio. 2016 Nov 15;7(6). pii: e01713-16. doi: 10.1128/mBio.01713-16.

14.

Hydrogen Limitation and Syntrophic Growth among Natural Assemblages of Thermophilic Methanogens at Deep-sea Hydrothermal Vents.

Topçuoğlu BD, Stewart LC, Morrison HG, Butterfield DA, Huber JA, Holden JF.

Front Microbiol. 2016 Aug 5;7:1240. doi: 10.3389/fmicb.2016.01240. eCollection 2016.

15.

Analysis of Lung Microbiota in Bronchoalveolar Lavage, Protected Brush and Sputum Samples from Subjects with Mild-To-Moderate Cystic Fibrosis Lung Disease.

Hogan DA, Willger SD, Dolben EL, Hampton TH, Stanton BA, Morrison HG, Sogin ML, Czum J, Ashare A.

PLoS One. 2016 Mar 4;11(3):e0149998. doi: 10.1371/journal.pone.0149998. eCollection 2016.

16.

Association of Cesarean Delivery and Formula Supplementation With the Intestinal Microbiome of 6-Week-Old Infants.

Madan JC, Hoen AG, Lundgren SN, Farzan SF, Cottingham KL, Morrison HG, Sogin ML, Li H, Moore JH, Karagas MR.

JAMA Pediatr. 2016 Mar;170(3):212-9. doi: 10.1001/jamapediatrics.2015.3732.

17.

Anvi'o: an advanced analysis and visualization platform for 'omics data.

Eren AM, Esen ÖC, Quince C, Vineis JH, Morrison HG, Sogin ML, Delmont TO.

PeerJ. 2015 Oct 8;3:e1319. doi: 10.7717/peerj.1319. eCollection 2015.

18.

Comparison of Sewage and Animal Fecal Microbiomes by Using Oligotyping Reveals Potential Human Fecal Indicators in Multiple Taxonomic Groups.

Fisher JC, Eren AM, Green HC, Shanks OC, Morrison HG, Vineis JH, Sogin ML, McLellan SL.

Appl Environ Microbiol. 2015 Oct;81(20):7023-33. doi: 10.1128/AEM.01524-15. Epub 2015 Jul 31.

19.

Associations between Gut Microbial Colonization in Early Life and Respiratory Outcomes in Cystic Fibrosis.

Hoen AG, Li J, Moulton LA, O'Toole GA, Housman ML, Koestler DC, Guill MF, Moore JH, Hibberd PL, Morrison HG, Sogin ML, Karagas MR, Madan JC.

J Pediatr. 2015 Jul;167(1):138-47.e1-3. doi: 10.1016/j.jpeds.2015.02.049. Epub 2015 Mar 26.

20.

Marine Oxygen-Deficient Zones Harbor Depauperate Denitrifying Communities Compared to Novel Genetic Diversity in Coastal Sediments.

Bowen JL, Weisman D, Yasuda M, Jayakumar A, Morrison HG, Ward BB.

Microb Ecol. 2015 Aug;70(2):311-21. doi: 10.1007/s00248-015-0582-y. Epub 2015 Feb 28.

PMID:
25721726
21.

Sewage reflects the microbiomes of human populations.

Newton RJ, McLellan SL, Dila DK, Vineis JH, Morrison HG, Eren AM, Sogin ML.

MBio. 2015 Feb 24;6(2):e02574. doi: 10.1128/mBio.02574-14.

22.

Characterization and quantification of the fungal microbiome in serial samples from individuals with cystic fibrosis.

Willger SD, Grim SL, Dolben EL, Shipunova A, Hampton TH, Morrison HG, Filkins LM, O'Toole GA, Moulton LA, Ashare A, Sogin ML, Hogan DA.

Microbiome. 2014 Nov 3;2:40. doi: 10.1186/2049-2618-2-40. eCollection 2014.

23.

Fetal exposures and perinatal influences on the stool microbiota of premature infants.

Chernikova DA, Koestler DC, Hoen AG, Housman ML, Hibberd PL, Moore JH, Morrison HG, Sogin ML, Zain-Ul-Abideen M, Madan JC.

J Matern Fetal Neonatal Med. 2016;29(1):99-105. doi: 10.3109/14767058.2014.987748. Epub 2015 Sep 4.

24.

Minimum entropy decomposition: unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences.

Eren AM, Morrison HG, Lescault PJ, Reveillaud J, Vineis JH, Sogin ML.

ISME J. 2015 Mar 17;9(4):968-79. doi: 10.1038/ismej.2014.195.

25.

The microbiome in pediatric cystic fibrosis patients: the role of shared environment suggests a window of intervention.

Hampton TH, Green DM, Cutting GR, Morrison HG, Sogin ML, Gifford AH, Stanton BA, O'Toole GA.

Microbiome. 2014 Apr 28;2:14. doi: 10.1186/2049-2618-2-14. eCollection 2014.

26.

The microbiota regulates susceptibility to Fas-mediated acute hepatic injury.

Celaj S, Gleeson MW, Deng J, O'Toole GA, Hampton TH, Toft MF, Morrison HG, Sogin ML, Putra J, Suriawinata AA, Gorham JD.

Lab Invest. 2014 Sep;94(9):938-49. doi: 10.1038/labinvest.2014.93. Epub 2014 Jul 28.

27.

A single genus in the gut microbiome reflects host preference and specificity.

Eren AM, Sogin ML, Morrison HG, Vineis JH, Fisher JC, Newton RJ, McLellan SL.

ISME J. 2015 Jan;9(1):90-100. doi: 10.1038/ismej.2014.97. Epub 2014 Jun 17.

28.

Metagenomic analysis of the medicinal leech gut microbiota.

Maltz MA, Bomar L, Lapierre P, Morrison HG, McClure EA, Sogin ML, Graf J.

Front Microbiol. 2014 Apr 17;5:151. doi: 10.3389/fmicb.2014.00151. eCollection 2014.

29.

Genomic and metabolic diversity of Marine Group I Thaumarchaeota in the mesopelagic of two subtropical gyres.

Swan BK, Chaffin MD, Martinez-Garcia M, Morrison HG, Field EK, Poulton NJ, Masland ED, Harris CC, Sczyrba A, Chain PS, Koren S, Woyke T, Stepanauskas R.

PLoS One. 2014 Apr 17;9(4):e95380. doi: 10.1371/journal.pone.0095380. eCollection 2014.

30.

Analysis, optimization and verification of Illumina-generated 16S rRNA gene amplicon surveys.

Nelson MC, Morrison HG, Benjamino J, Grim SL, Graf J.

PLoS One. 2014 Apr 10;9(4):e94249. doi: 10.1371/journal.pone.0094249. eCollection 2014.

31.

Comparison of brush and biopsy sampling methods of the ileal pouch for assessment of mucosa-associated microbiota of human subjects.

Huse SM, Young VB, Morrison HG, Antonopoulos DA, Kwon J, Dalal S, Arrieta R, Hubert NA, Shen L, Vineis JH, Koval JC, Sogin ML, Chang EB, Raffals LE.

Microbiome. 2014 Feb 14;2(1):5. doi: 10.1186/2049-2618-2-5.

32.

VAMPS: a website for visualization and analysis of microbial population structures.

Huse SM, Mark Welch DB, Voorhis A, Shipunova A, Morrison HG, Eren AM, Sogin ML.

BMC Bioinformatics. 2014 Feb 5;15:41. doi: 10.1186/1471-2105-15-41.

33.

Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis.

Young VB, Raffals LH, Huse SM, Vital M, Dai D, Schloss PD, Brulc JM, Antonopoulos DA, Arrieta RL, Kwon JH, Reddy KG, Hubert NA, Grim SL, Vineis JH, Dalal S, Morrison HG, Eren AM, Meyer F, Schmidt TM, Tiedje JM, Chang EB, Sogin ML.

Microbiome. 2013 Mar 4;1(1):9. doi: 10.1186/2049-2618-1-9.

34.

A gene-targeted approach to investigate the intestinal butyrate-producing bacterial community.

Vital M, Penton CR, Wang Q, Young VB, Antonopoulos DA, Sogin ML, Morrison HG, Raffals L, Chang EB, Huffnagle GB, Schmidt TM, Cole JR, Tiedje JM.

Microbiome. 2013 Mar 4;1(1):8. doi: 10.1186/2049-2618-1-8.

35.

Unique microbial communities persist in individual cystic fibrosis patients throughout a clinical exacerbation.

Price KE, Hampton TH, Gifford AH, Dolben EL, Hogan DA, Morrison HG, Sogin ML, O'Toole GA.

Microbiome. 2013 Nov 1;1(1):27. doi: 10.1186/2049-2618-1-27.

36.

Oligotyping: Differentiating between closely related microbial taxa using 16S rRNA gene data.

Eren AM, Maignien L, Sul WJ, Murphy LG, Grim SL, Morrison HG, Sogin ML.

Methods Ecol Evol. 2013 Dec 1;4(12). doi: 10.1111/2041-210X.12114.

37.

Shifts in the microbial community composition of Gulf Coast beaches following beach oiling.

Newton RJ, Huse SM, Morrison HG, Peake CS, Sogin ML, McLellan SL.

PLoS One. 2013 Sep 10;8(9):e74265. doi: 10.1371/journal.pone.0074265. eCollection 2013. Erratum in: PLoS One. 2014;9(4):e94671.

38.

A filtering method to generate high quality short reads using illumina paired-end technology.

Eren AM, Vineis JH, Morrison HG, Sogin ML.

PLoS One. 2013 Jun 17;8(6):e66643. doi: 10.1371/journal.pone.0066643. Print 2013. Erratum in: PLoS One. 2013;8(6). doi:10.1371/annotation/afa5c40d-c604-46ae-84c4-82cb92193a5e.

39.

DRISEE overestimates errors in metagenomic sequencing data.

Eren AM, Morrison HG, Huse SM, Sogin ML.

Brief Bioinform. 2014 Sep;15(5):783-7. doi: 10.1093/bib/bbt010. Epub 2013 May 22.

40.

A microbial signature approach to identify fecal pollution in the waters off an urbanized coast of Lake Michigan.

Newton RJ, Bootsma MJ, Morrison HG, Sogin ML, McLellan SL.

Microb Ecol. 2013 May;65(4):1011-23. doi: 10.1007/s00248-013-0200-9. Epub 2013 Mar 9.

41.

High-throughput 96-well solvent mediated sonic blending synthesis and on-plate solid/solution stability characterization of pharmaceutical cocrystals.

Luu V, Jona J, Stanton MK, Peterson ML, Morrison HG, Nagapudi K, Tan H.

Int J Pharm. 2013 Jan 30;441(1-2):356-64. doi: 10.1016/j.ijpharm.2012.11.020. Epub 2012 Nov 23.

PMID:
23178596
42.

Microbial communities in the subglacial waters of the Vatnajökull ice cap, Iceland.

Marteinsson VT, Rúnarsson Á, Stefánsson A, Thorsteinsson T, Jóhannesson T, Magnússon SH, Reynisson E, Einarsson B, Wade N, Morrison HG, Gaidos E.

ISME J. 2013 Feb;7(2):427-37. doi: 10.1038/ismej.2012.97. Epub 2012 Sep 13.

43.

Serial analysis of the gut and respiratory microbiome in cystic fibrosis in infancy: interaction between intestinal and respiratory tracts and impact of nutritional exposures.

Madan JC, Koestler DC, Stanton BA, Davidson L, Moulton LA, Housman ML, Moore JH, Guill MF, Morrison HG, Sogin ML, Hampton TH, Karagas MR, Palumbo PE, Foster JA, Hibberd PL, O'Toole GA.

MBio. 2012 Aug 21;3(4). pii: e00251-12. doi: 10.1128/mBio.00251-12. Print 2012.

44.

Prevalence of streptococci and increased polymicrobial diversity associated with cystic fibrosis patient stability.

Filkins LM, Hampton TH, Gifford AH, Gross MJ, Hogan DA, Sogin ML, Morrison HG, Paster BJ, O'Toole GA.

J Bacteriol. 2012 Sep;194(17):4709-17. doi: 10.1128/JB.00566-12. Epub 2012 Jun 29.

45.

Salt marsh sediment diversity: a test of the variability of the rare biosphere among environmental replicates.

Bowen JL, Morrison HG, Hobbie JE, Sogin ML.

ISME J. 2012 Nov;6(11):2014-23. doi: 10.1038/ismej.2012.47. Epub 2012 Jun 28.

46.

Acinetobacter, Aeromonas and Trichococcus populations dominate the microbial community within urban sewer infrastructure.

Vandewalle JL, Goetz GW, Huse SM, Morrison HG, Sogin ML, Hoffmann RG, Yan K, McLellan SL.

Environ Microbiol. 2012 Sep;14(9):2538-52. doi: 10.1111/j.1462-2920.2012.02757.x. Epub 2012 Apr 24.

47.

Optimization of a Potent, Orally Active S1P1 Agonist Containing a Quinolinone Core.

Harrington PE, Croghan MD, Fotsch C, Frohn M, Lanman BA, Pennington LD, Pickrell AJ, Reed AB, Sham KK, Tasker A, Arnett HA, Fiorino M, Lee MR, McElvain M, Morrison HG, Xu H, Xu Y, Zhang X, Wong M, Cee VJ.

ACS Med Chem Lett. 2011 Nov 23;3(1):74-8. doi: 10.1021/ml200252b. eCollection 2012 Jan 12.

48.

Quinolinone-based agonists of S1P₁: use of a N-scan SAR strategy to optimize in vitro and in vivo activity.

Pennington LD, Croghan MD, Sham KK, Pickrell AJ, Harrington PE, Frohn MJ, Lanman BA, Reed AB, Lee MR, Xu H, McElvain M, Xu Y, Zhang X, Fiorino M, Horner M, Morrison HG, Arnett HA, Fotsch C, Tasker AS, Wong M, Cee VJ.

Bioorg Med Chem Lett. 2012 Jan 1;22(1):527-31. doi: 10.1016/j.bmcl.2011.10.085. Epub 2011 Nov 4.

PMID:
22104144
49.

4-Methoxy-N-[2-(trifluoromethyl)biphenyl-4-ylcarbamoyl]nicotinamide: A Potent and Selective Agonist of S1P1.

Pennington LD, Sham KK, Pickrell AJ, Harrington PE, Frohn MJ, Lanman BA, Reed AB, Croghan MD, Lee MR, Xu H, McElvain M, Xu Y, Zhang X, Fiorino M, Horner M, Morrison HG, Arnett HA, Fotsch C, Wong M, Cee VJ.

ACS Med Chem Lett. 2011 Jul 29;2(10):752-7. doi: 10.1021/ml2001399. eCollection 2011 Oct 13.

50.

Optical map of the genotype A1 WB C6 Giardia lamblia genome isolate.

Perry DA, Morrison HG, Adam RD.

Mol Biochem Parasitol. 2011 Dec;180(2):112-4. doi: 10.1016/j.molbiopara.2011.07.008. Epub 2011 Jul 30.

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