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Use of C-Reactive Protein and Ferritin Biomarkers in Daily Pediatric Practice.

Taylor MD, Allada V, Moritz ML, Nowalk AJ, Sindhi R, Aneja RK, Torok K, Morowitz MJ, Michaels M, Carcillo JA.

Pediatr Rev. 2020 Apr;41(4):172-183. doi: 10.1542/pir.2018-0101.


Combined analysis of microbial metagenomic and metatranscriptomic sequencing data to assess in situ physiological conditions in the premature infant gut.

Sher Y, Olm MR, Raveh-Sadka T, Brown CT, Sher R, Firek B, Baker R, Morowitz MJ, Banfield JF.

PLoS One. 2020 Mar 4;15(3):e0229537. doi: 10.1371/journal.pone.0229537. eCollection 2020.


Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria.

Olm MR, Bhattacharya N, Crits-Christoph A, Firek BA, Baker R, Song YS, Morowitz MJ, Banfield JF.

Sci Adv. 2019 Dec 11;5(12):eaax5727. doi: 10.1126/sciadv.aax5727. eCollection 2019 Dec.


Effect of dietary cellulose supplementation on gut barrier function and apoptosis in a murine model of endotoxemia.

Di Caro V, Alcamo AM, Cummings JL, Clark RSB, Novak EA, Mollen KP, Morowitz MJ, Aneja RK.

PLoS One. 2019 Dec 2;14(12):e0224838. doi: 10.1371/journal.pone.0224838. eCollection 2019.


The Pediatric Surgeon-Scientist: Succeeding in Today's Academic Environment.

Steen EH, Moles CM, Goldstein AM, Morowitz MJ, Gosain A, Mollen KP, Hackam D, Keswani SG.

J Surg Res. 2019 Dec;244:502-508. doi: 10.1016/j.jss.2019.06.008. Epub 2019 Jul 19.


Maternal IgA protects against the development of necrotizing enterocolitis in preterm infants.

Gopalakrishna KP, Macadangdang BR, Rogers MB, Tometich JT, Firek BA, Baker R, Ji J, Burr AHP, Ma C, Good M, Morowitz MJ, Hand TW.

Nat Med. 2019 Jul;25(7):1110-1115. doi: 10.1038/s41591-019-0480-9. Epub 2019 Jun 17.


Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms.

Olm MR, West PT, Brooks B, Firek BA, Baker R, Morowitz MJ, Banfield JF.

Microbiome. 2019 Feb 15;7(1):26. doi: 10.1186/s40168-019-0638-1.


Plant-based Enteral Nutrition Modifies the Gut Microbiota and Improves Outcomes in Murine Models of Colitis.

Yeh A, Conners EM, Ramos-Jimenez RG, Firek B, Novak EA, Rogers MB, Cheek R, Ozolek J, Mollen KP, Morowitz MJ.

Cell Mol Gastroenterol Hepatol. 2019;7(4):872-874.e6. doi: 10.1016/j.jcmgh.2019.01.007. Epub 2019 Feb 1. No abstract available.


Pilot Study of the Effect of Plant-Based Enteral Nutrition on the Gut Microbiota in Chronically Ill Tube-Fed Children.

McClanahan D, Yeh A, Firek B, Zettle S, Rogers M, Cheek R, Nguyen MVL, Gayer CP, Wendell SG, Mullett SJ, Morowitz MJ.

JPEN J Parenter Enteral Nutr. 2019 Sep;43(7):899-911. doi: 10.1002/jpen.1504. Epub 2019 Jan 15.


Genetic association and differential expression of PITX2 with acute appendicitis.

Orlova E, Yeh A, Shi M, Firek B, Ranganathan S; 23andMe Research Team, Whitcomb DC, Finegold DN, Ferrell RE, Barmada MM, Marazita ML, Hinds DA, Shaffer JR, Morowitz MJ.

Hum Genet. 2019 Jan;138(1):37-47. doi: 10.1007/s00439-018-1956-2. Epub 2018 Nov 3.


Dietary Cellulose Supplementation Modulates the Immune Response in a Murine Endotoxemia Model.

Di Caro V, Cummings JL, Alcamo AM, Piganelli JD, Clark RSB, Morowitz MJ, Aneja RK.

Shock. 2019 Apr;51(4):526-534. doi: 10.1097/SHK.0000000000001180.


The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms.

Brooks B, Olm MR, Firek BA, Baker R, Geller-McGrath D, Reimer SR, Soenjoyo KR, Yip JS, Dahan D, Thomas BC, Morowitz MJ, Banfield JF.

Microbiome. 2018 Jun 20;6(1):112. doi: 10.1186/s40168-018-0493-5.


Hospitalized Premature Infants Are Colonized by Related Bacterial Strains with Distinct Proteomic Profiles.

Brown CT, Xiong W, Olm MR, Thomas BC, Baker R, Firek B, Morowitz MJ, Hettich RL, Banfield JF.

mBio. 2018 Apr 10;9(2). pii: e00441-18. doi: 10.1128/mBio.00441-18.


Intestinal epithelial Toll-like receptor 4 prevents metabolic syndrome by regulating interactions between microbes and intestinal epithelial cells in mice.

Lu P, Sodhi CP, Yamaguchi Y, Jia H, Prindle T Jr, Fulton WB, Vikram A, Bibby KJ, Morowitz MJ, Hackam DJ.

Mucosal Immunol. 2018 May;11(3):727-740. doi: 10.1038/mi.2017.114. Epub 2018 Jan 24.


Safety, Clinical Response, and Microbiome Findings Following Fecal Microbiota Transplant in Children With Inflammatory Bowel Disease.

Goyal A, Yeh A, Bush BR, Firek BA, Siebold LM, Rogers MB, Kufen AD, Morowitz MJ.

Inflamm Bowel Dis. 2018 Jan 18;24(2):410-421. doi: 10.1093/ibd/izx035.


Machine Learning Leveraging Genomes from Metagenomes Identifies Influential Antibiotic Resistance Genes in the Infant Gut Microbiome.

Rahman SF, Olm MR, Morowitz MJ, Banfield JF.

mSystems. 2018 Jan 9;3(1). pii: e00123-17. doi: 10.1128/mSystems.00123-17. eCollection 2018 Jan-Feb.


Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome.

Brooks B, Olm MR, Firek BA, Baker R, Thomas BC, Morowitz MJ, Banfield JF.

Nat Commun. 2017 Nov 27;8(1):1814. doi: 10.1038/s41467-017-02018-w.


Genome-resolved metaproteomic characterization of preterm infant gut microbiota development reveals species-specific metabolic shifts and variabilities during early life.

Xiong W, Brown CT, Morowitz MJ, Banfield JF, Hettich RL.

Microbiome. 2017 Jul 10;5(1):72. doi: 10.1186/s40168-017-0290-6.


Candidatus Mycoplasma girerdii replicates, diversifies, and co-occurs with Trichomonas vaginalis in the oral cavity of a premature infant.

Costello EK, Sun CL, Carlisle EM, Morowitz MJ, Banfield JF, Relman DA.

Sci Rep. 2017 Jun 19;7(1):3764. doi: 10.1038/s41598-017-03821-7.


Dietary Supplementation With Nonfermentable Fiber Alters the Gut Microbiota and Confers Protection in Murine Models of Sepsis.

Morowitz MJ, Di Caro V, Pang D, Cummings J, Firek B, Rogers MB, Ranganathan S, Clark RSB, Aneja RK.

Crit Care Med. 2017 May;45(5):e516-e523. doi: 10.1097/CCM.0000000000002291.


Disruption of the microbiota across multiple body sites in critically ill children.

Rogers MB, Firek B, Shi M, Yeh A, Brower-Sinning R, Aveson V, Kohl BL, Fabio A, Carcillo JA, Morowitz MJ.

Microbiome. 2016 Dec 29;4(1):66. doi: 10.1186/s40168-016-0211-0.


Dysbiosis in the intensive care unit: Microbiome science coming to the bedside.

Kitsios GD, Morowitz MJ, Dickson RP, Huffnagle GB, McVerry BJ, Morris A.

J Crit Care. 2017 Apr;38:84-91. doi: 10.1016/j.jcrc.2016.09.029. Epub 2016 Oct 11. Review.


Disturbances of the Perioperative Microbiome Across Multiple Body Sites in Patients Undergoing Pancreaticoduodenectomy.

Rogers MB, Aveson V, Firek B, Yeh A, Brooks B, Brower-Sinning R, Steve J, Banfield JF, Zureikat A, Hogg M, Boone BA, Zeh HJ, Morowitz MJ.

Pancreas. 2017 Feb;46(2):260-267. doi: 10.1097/MPA.0000000000000726.


Dysbiosis Across Multiple Body Sites in Critically Ill Adult Surgical Patients.

Yeh A, Rogers MB, Firek B, Neal MD, Zuckerbraun BS, Morowitz MJ.

Shock. 2016 Dec;46(6):649-654.


Evidence for persistent and shared bacterial strains against a background of largely unique gut colonization in hospitalized premature infants.

Raveh-Sadka T, Firek B, Sharon I, Baker R, Brown CT, Thomas BC, Morowitz MJ, Banfield JF.

ISME J. 2016 Dec;10(12):2817-2830. doi: 10.1038/ismej.2016.83. Epub 2016 Jun 3.


Concentrations and Sources of Airborne Particles in a Neonatal Intensive Care Unit.

Licina D, Bhangar S, Brooks B, Baker R, Firek B, Tang X, Morowitz MJ, Banfield JF, Nazaroff WW.

PLoS One. 2016 May 13;11(5):e0154991. doi: 10.1371/journal.pone.0154991. eCollection 2016.


Acute Appendicitis in Children Is Associated With a Local Expansion of Fusobacteria.

Rogers MB, Brower-Sinning R, Firek B, Zhong D, Morowitz MJ.

Clin Infect Dis. 2016 Jul 1;63(1):71-78. doi: 10.1093/cid/ciw208. Epub 2016 Apr 7.


Peroxisome Proliferator-activated Receptor-γ Coactivator 1-α (PGC1α) Protects against Experimental Murine Colitis.

Cunningham KE, Vincent G, Sodhi CP, Novak EA, Ranganathan S, Egan CE, Stolz DB, Rogers MB, Firek B, Morowitz MJ, Gittes GK, Zuckerbraun BS, Hackam DJ, Mollen KP.

J Biol Chem. 2016 May 6;291(19):10184-200. doi: 10.1074/jbc.M115.688812. Epub 2016 Mar 11.


Strain-resolved microbial community proteomics reveals simultaneous aerobic and anaerobic function during gastrointestinal tract colonization of a preterm infant.

Brooks B, Mueller RS, Young JC, Morowitz MJ, Hettich RL, Banfield JF.

Front Microbiol. 2015 Jul 1;6:654. doi: 10.3389/fmicb.2015.00654. eCollection 2015.


Metaproteomics reveals functional shifts in microbial and human proteins during a preterm infant gut colonization case.

Young JC, Pan C, Adams RM, Brooks B, Banfield JF, Morowitz MJ, Hettich RL.

Proteomics. 2015 Oct;15(20):3463-73. doi: 10.1002/pmic.201400563. Epub 2015 Jul 21.


What does it take to be a successful pediatric surgeon-scientist?

Watson C, King A, Mitra S, Shaaban AF, Goldstein AM, Morowitz MJ, Warner BW, Crombleholme TM, Keswani SG.

J Pediatr Surg. 2015 Jun;50(6):1049-52. doi: 10.1016/j.jpedsurg.2015.03.037. Epub 2015 Mar 14.


Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development.

Raveh-Sadka T, Thomas BC, Singh A, Firek B, Brooks B, Castelle CJ, Sharon I, Baker R, Good M, Morowitz MJ, Banfield JF.

Elife. 2015 Mar 3;4. doi: 10.7554/eLife.05477.


Development of an enhanced metaproteomic approach for deepening the microbiome characterization of the human infant gut.

Xiong W, Giannone RJ, Morowitz MJ, Banfield JF, Hettich RL.

J Proteome Res. 2015 Jan 2;14(1):133-41. doi: 10.1021/pr500936p. Epub 2014 Nov 12.


Mucosa-associated bacterial diversity in necrotizing enterocolitis.

Brower-Sinning R, Zhong D, Good M, Firek B, Baker R, Sodhi CP, Hackam DJ, Morowitz MJ.

PLoS One. 2014 Sep 9;9(9):e105046. doi: 10.1371/journal.pone.0105046. eCollection 2014.


Lactobacillus rhamnosus HN001 decreases the severity of necrotizing enterocolitis in neonatal mice and preterm piglets: evidence in mice for a role of TLR9.

Good M, Sodhi CP, Ozolek JA, Buck RH, Goehring KC, Thomas DL, Vikram A, Bibby K, Morowitz MJ, Firek B, Lu P, Hackam DJ.

Am J Physiol Gastrointest Liver Physiol. 2014 Jun 1;306(11):G1021-32. doi: 10.1152/ajpgi.00452.2013. Epub 2014 Apr 17.


Acute appendicitis in children is associated with an abundance of bacteria from the phylum Fusobacteria.

Zhong D, Brower-Sinning R, Firek B, Morowitz MJ.

J Pediatr Surg. 2014 Mar;49(3):441-6. doi: 10.1016/j.jpedsurg.2013.06.026.


Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants.

Brooks B, Firek BA, Miller CS, Sharon I, Thomas BC, Baker R, Morowitz MJ, Banfield JF.

Microbiome. 2014 Jan 28;2(1):1. doi: 10.1186/2049-2618-2-1.


Proceedings of the 2013 A.S.P.E.N. Research workshop: the interface between nutrition and the gut microbiome: implications and applications for human health [corrected].

Alverdy J, Gilbert J, DeFazio JR, Sadowsky MJ, Chang EB, Morowitz MJ, Teitelbaum DH.

JPEN J Parenter Enteral Nutr. 2014 Feb;38(2):167-78. doi: 10.1177/0148607113517904. Epub 2013 Dec 30. Review. Erratum in: JPEN J Parenter Enteral Nutr. 2014 Mar-Apr;38(3):404.


Microbiome assembly across multiple body sites in low-birthweight infants.

Costello EK, Carlisle EM, Bik EM, Morowitz MJ, Relman DA.

mBio. 2013 Oct 29;4(6):e00782-13. doi: 10.1128/mBio.00782-13.


The intestinal microbiome and necrotizing enterocolitis.

Carlisle EM, Morowitz MJ.

Curr Opin Pediatr. 2013 Jun;25(3):382-7. doi: 10.1097/MOP.0b013e3283600e91. Review.


Effect of dietary monosaccharides on Pseudomonas aeruginosa virulence.

Nelson RK, Poroyko V, Morowitz MJ, Liu D, Alverdy JC.

Surg Infect (Larchmt). 2013 Feb;14(1):35-42. doi: 10.1089/sur.2011.063. Epub 2013 Mar 1.


Murine gut microbiota and transcriptome are diet dependent.

Carlisle EM, Poroyko V, Caplan MS, Alverdy J, Morowitz MJ, Liu D.

Ann Surg. 2013 Feb;257(2):287-94. doi: 10.1097/SLA.0b013e318262a6a6.


Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization.

Sharon I, Morowitz MJ, Thomas BC, Costello EK, Relman DA, Banfield JF.

Genome Res. 2013 Jan;23(1):111-20. doi: 10.1101/gr.142315.112. Epub 2012 Aug 30.


Intestinal epithelial Toll-like receptor 4 regulates goblet cell development and is required for necrotizing enterocolitis in mice.

Sodhi CP, Neal MD, Siggers R, Sho S, Ma C, Branca MF, Prindle T Jr, Russo AM, Afrazi A, Good M, Brower-Sinning R, Firek B, Morowitz MJ, Ozolek JA, Gittes GK, Billiar TR, Hackam DJ.

Gastroenterology. 2012 Sep;143(3):708-718.e5. doi: 10.1053/j.gastro.2012.05.053. Epub 2012 Jul 13.


Contributions of intestinal bacteria to nutrition and metabolism in the critically ill.

Morowitz MJ, Carlisle EM, Alverdy JC.

Surg Clin North Am. 2011 Aug;91(4):771-85, viii. doi: 10.1016/j.suc.2011.05.001. Review.


The human microbiome and surgical disease.

Morowitz MJ, Babrowski T, Carlisle EM, Olivas A, Romanowski KS, Seal JB, Liu DC, Alverdy JC.

Ann Surg. 2011 Jun;253(6):1094-101. doi: 10.1097/SLA.0b013e31821175d7.


Pediatric surgery and the human microbiome.

Carlisle EM, Morowitz MJ.

J Pediatr Surg. 2011 Mar;46(3):577-84. doi: 10.1016/j.jpedsurg.2010.12.018. Review.


Strain-resolved community genomic analysis of gut microbial colonization in a premature infant.

Morowitz MJ, Denef VJ, Costello EK, Thomas BC, Poroyko V, Relman DA, Banfield JF.

Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1128-33. doi: 10.1073/pnas.1010992108. Epub 2010 Dec 29. Erratum in: Proc Natl Acad Sci U S A. 2011 Mar 15;108(11):4512.


Gut microbial gene expression in mother-fed and formula-fed piglets.

Poroyko V, White JR, Wang M, Donovan S, Alverdy J, Liu DC, Morowitz MJ.

PLoS One. 2010 Aug 27;5(8):e12459. doi: 10.1371/journal.pone.0012459.

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