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Items: 48

1.

Origin of Short-Chain Organic Acids in Serpentinite Mud Volcanoes of the Mariana Convergent Margin.

Eickenbusch P, Takai K, Sissman O, Suzuki S, Menzies C, Sakai S, Sansjofre P, Tasumi E, Bernasconi SM, Glombitza C, Jørgensen BB, Morono Y, Lever MA.

Front Microbiol. 2019 Jul 26;10:1729. doi: 10.3389/fmicb.2019.01729. eCollection 2019.

2.

An Improved Method for Extracting Viruses From Sediment: Detection of Far More Viruses in the Subseafloor Than Previously Reported.

Pan D, Morono Y, Inagaki F, Takai K.

Front Microbiol. 2019 Apr 29;10:878. doi: 10.3389/fmicb.2019.00878. eCollection 2019.

3.

Microbial Metabolism and Community Dynamics in Hydraulic Fracturing Fluids Recovered From Deep Hydrocarbon-Rich Shale.

Morono Y, Wishart JR, Ito M, Ijiri A, Hoshino T, Torres M, Verba C, Terada T, Inagaki F, Colwell FS.

Front Microbiol. 2019 Mar 12;10:376. doi: 10.3389/fmicb.2019.00376. eCollection 2019.

4.

Microbial dormancy in the marine subsurface: Global endospore abundance and response to burial.

Wörmer L, Hoshino T, Bowles MW, Viehweger B, Adhikari RR, Xiao N, Uramoto GI, Könneke M, Lazar CS, Morono Y, Inagaki F, Hinrichs KU.

Sci Adv. 2019 Feb 20;5(2):eaav1024. doi: 10.1126/sciadv.aav1024. eCollection 2019 Feb.

5.

Cultivable microbial community in 2-km-deep, 20-million-year-old subseafloor coalbeds through ~1000 days anaerobic bioreactor cultivation.

Imachi H, Tasumi E, Takaki Y, Hoshino T, Schubotz F, Gan S, Tu TH, Saito Y, Yamanaka Y, Ijiri A, Matsui Y, Miyazaki M, Morono Y, Takai K, Hinrichs KU, Inagaki F.

Sci Rep. 2019 Feb 19;9(1):2305. doi: 10.1038/s41598-019-38754-w.

6.

Significant contribution of subseafloor microparticles to the global manganese budget.

Uramoto GI, Morono Y, Tomioka N, Wakaki S, Nakada R, Wagai R, Uesugi K, Takeuchi A, Hoshino M, Suzuki Y, Shiraishi F, Mitsunobu S, Suga H, Takeichi Y, Takahashi Y, Inagaki F.

Nat Commun. 2019 Feb 6;10(1):400. doi: 10.1038/s41467-019-08347-2.

7.

Metal-ion-induced expression of gene fragments from subseafloor micro-organisms in the Kumano forearc basin, Nankai Trough.

Wakamatsu T, Morono Y, Futagami T, Terada T, Nishikawa S, Morisawa T, Ohshita K, Inagaki F, Ashiuchi M.

J Appl Microbiol. 2018 Nov;125(5):1396-1407. doi: 10.1111/jam.14061. Epub 2018 Sep 9.

PMID:
30080957
8.

Deep-biosphere methane production stimulated by geofluids in the Nankai accretionary complex.

Ijiri A, Inagaki F, Kubo Y, Adhikari RR, Hattori S, Hoshino T, Imachi H, Kawagucci S, Morono Y, Ohtomo Y, Ono S, Sakai S, Takai K, Toki T, Wang DT, Yoshinaga MY, Arnold GL, Ashi J, Case DH, Feseker T, Hinrichs KU, Ikegawa Y, Ikehara M, Kallmeyer J, Kumagai H, Lever MA, Morita S, Nakamura KI, Nakamura Y, Nishizawa M, Orphan VJ, Røy H, Schmidt F, Tani A, Tanikawa W, Terada T, Tomaru H, Tsuji T, Tsunogai U, Yamaguchi YT, Yoshida N.

Sci Adv. 2018 Jun 13;4(6):eaao4631. doi: 10.1126/sciadv.aao4631. eCollection 2018 Jun.

9.

Assessment of Capacity to Capture DNA Aerosols by Clean Filters for Molecular Biology Experiments.

Morono Y, Hoshino T, Terada T, Suzuki T, Sato T, Yuasa H, Kubota Y, Inagaki F.

Microbes Environ. 2018 Jul 4;33(2):222-226. doi: 10.1264/jsme2.ME18012. Epub 2018 Jun 16.

10.

D:L-Amino Acid Modeling Reveals Fast Microbial Turnover of Days to Months in the Subsurface Hydrothermal Sediment of Guaymas Basin.

Møller MH, Glombitza C, Lever MA, Deng L, Morono Y, Inagaki F, Doll M, Su CC, Lomstein BA.

Front Microbiol. 2018 May 15;9:967. doi: 10.3389/fmicb.2018.00967. eCollection 2018.

11.

Microbial Diversity in Sediments from the Bottom of the Challenger Deep, the Mariana Trench.

Nunoura T, Nishizawa M, Hirai M, Shimamura S, Harnvoravongchai P, Koide O, Morono Y, Fukui T, Inagaki F, Miyazaki J, Takaki Y, Takai K.

Microbes Environ. 2018 Jul 4;33(2):186-194. doi: 10.1264/jsme2.ME17194. Epub 2018 May 25.

12.

Aerobic and Anaerobic Methanotrophic Communities Associated with Methane Hydrates Exposed on the Seafloor: A High-Pressure Sampling and Stable Isotope-Incubation Experiment.

Case DH, Ijiri A, Morono Y, Tavormina P, Orphan VJ, Inagaki F.

Front Microbiol. 2017 Dec 19;8:2569. doi: 10.3389/fmicb.2017.02569. eCollection 2017.

13.

Methyl-compound use and slow growth characterize microbial life in 2-km-deep subseafloor coal and shale beds.

Trembath-Reichert E, Morono Y, Ijiri A, Hoshino T, Dawson KS, Inagaki F, Orphan VJ.

Proc Natl Acad Sci U S A. 2017 Oct 31;114(44):E9206-E9215. doi: 10.1073/pnas.1707525114. Epub 2017 Oct 3.

14.

Archaeal MutS5 tightly binds to Holliday junction similarly to eukaryotic MutSγ.

Ohshita K, Fukui K, Sato M, Morisawa T, Hakumai Y, Morono Y, Inagaki F, Yano T, Ashiuchi M, Wakamatsu T.

FEBS J. 2017 Oct;284(20):3470-3483. doi: 10.1111/febs.14204. Epub 2017 Sep 4.

15.

Atribacteria from the Subseafloor Sedimentary Biosphere Disperse to the Hydrosphere through Submarine Mud Volcanoes.

Hoshino T, Toki T, Ijiri A, Morono Y, Machiyama H, Ashi J, Okamura K, Inagaki F.

Front Microbiol. 2017 Jun 20;8:1135. doi: 10.3389/fmicb.2017.01135. eCollection 2017.

16.

Bioturbation as a key driver behind the dominance of Bacteria over Archaea in near-surface sediment.

Chen X, Andersen TJ, Morono Y, Inagaki F, Jørgensen BB, Lever MA.

Sci Rep. 2017 May 25;7(1):2400. doi: 10.1038/s41598-017-02295-x.

17.

Predominance of Viable Spore-Forming Piezophilic Bacteria in High-Pressure Enrichment Cultures from ~1.5 to 2.4 km-Deep Coal-Bearing Sediments below the Ocean Floor.

Fang J, Kato C, Runko GM, Nogi Y, Hori T, Li J, Morono Y, Inagaki F.

Front Microbiol. 2017 Feb 6;8:137. doi: 10.3389/fmicb.2017.00137. eCollection 2017.

18.

Size and Carbon Content of Sub-seafloor Microbial Cells at Landsort Deep, Baltic Sea.

Braun S, Morono Y, Littmann S, Kuypers M, Aslan H, Dong M, Jørgensen BB, Lomstein BA.

Front Microbiol. 2016 Aug 31;7:1375. doi: 10.3389/fmicb.2016.01375. eCollection 2016.

19.

A Modified SDS-Based DNA Extraction Method for High Quality Environmental DNA from Seafloor Environments.

Natarajan VP, Zhang X, Morono Y, Inagaki F, Wang F.

Front Microbiol. 2016 Jun 23;7:986. doi: 10.3389/fmicb.2016.00986. eCollection 2016.

20.

Analysis of Low-Biomass Microbial Communities in the Deep Biosphere.

Morono Y, Inagaki F.

Adv Appl Microbiol. 2016;95:149-78. doi: 10.1016/bs.aambs.2016.04.001. Epub 2016 May 11. Review.

PMID:
27261783
21.

Ecophysiology of Zetaproteobacteria Associated with Shallow Hydrothermal Iron-Oxyhydroxide Deposits in Nagahama Bay of Satsuma Iwo-Jima, Japan.

Hoshino T, Kuratomi T, Morono Y, Hori T, Oiwane H, Kiyokawa S, Inagaki F.

Front Microbiol. 2016 Jan 11;6:1554. doi: 10.3389/fmicb.2015.01554. eCollection 2015.

22.

Variance and potential niche separation of microbial communities in subseafloor sediments off Shimokita Peninsula, Japan.

Nunoura T, Takaki Y, Shimamura S, Kakuta J, Kazama H, Hirai M, Masui N, Tomaru H, Morono Y, Imachi H, Inagaki F, Takai K.

Environ Microbiol. 2016 Jun;18(6):1889-906. doi: 10.1111/1462-2920.13096. Epub 2015 Dec 10.

PMID:
26486095
23.

DEEP BIOSPHERE. Exploring deep microbial life in coal-bearing sediment down to ~2.5 km below the ocean floor.

Inagaki F, Hinrichs KU, Kubo Y, Bowles MW, Heuer VB, Hong WL, Hoshino T, Ijiri A, Imachi H, Ito M, Kaneko M, Lever MA, Lin YS, Methé BA, Morita S, Morono Y, Tanikawa W, Bihan M, Bowden SA, Elvert M, Glombitza C, Gross D, Harrington GJ, Hori T, Li K, Limmer D, Liu CH, Murayama M, Ohkouchi N, Ono S, Park YS, Phillips SC, Prieto-Mollar X, Purkey M, Riedinger N, Sanada Y, Sauvage J, Snyder G, Susilawati R, Takano Y, Tasumi E, Terada T, Tomaru H, Trembath-Reichert E, Wang DT, Yamada Y.

Science. 2015 Jul 24;349(6246):420-4. doi: 10.1126/science.aaa6882. Epub 2015 Jul 23.

24.

Intact preservation of environmental samples by freezing under an alternating magnetic field.

Morono Y, Terada T, Yamamoto Y, Xiao N, Hirose T, Sugeno M, Ohwada N, Inagaki F.

Environ Microbiol Rep. 2015 Apr;7(2):243-51. doi: 10.1111/1758-2229.12238. Epub 2015 Jan 23.

PMID:
25403324
25.

Gold-ISH: a nano-size gold particle-based phylogenetic identification compatible with NanoSIMS.

Kubota K, Morono Y, Ito M, Terada T, Itezono S, Harada H, Inagaki F.

Syst Appl Microbiol. 2014 Jun;37(4):261-6. doi: 10.1016/j.syapm.2014.02.003. Epub 2014 Apr 1.

PMID:
24702906
26.

High frequency of phylogenetically diverse reductive dehalogenase-homologous genes in deep subseafloor sedimentary metagenomes.

Kawai M, Futagami T, Toyoda A, Takaki Y, Nishi S, Hori S, Arai W, Tsubouchi T, Morono Y, Uchiyama I, Ito T, Fujiyama A, Inagaki F, Takami H.

Front Microbiol. 2014 Mar 3;5:80. doi: 10.3389/fmicb.2014.00080. eCollection 2014.

27.

Hot-alkaline DNA extraction method for deep-subseafloor archaeal communities.

Morono Y, Terada T, Hoshino T, Inagaki F.

Appl Environ Microbiol. 2014 Mar;80(6):1985-94. doi: 10.1128/AEM.04150-13. Epub 2014 Jan 17. Erratum in: Appl Environ Microbiol. 2014 Aug;80(15):4785.

28.

Biological CO2 conversion to acetate in subsurface coal-sand formation using a high-pressure reactor system.

Ohtomo Y, Ijiri A, Ikegawa Y, Tsutsumi M, Imachi H, Uramoto G, Hoshino T, Morono Y, Sakai S, Saito Y, Tanikawa W, Hirose T, Inagaki F.

Front Microbiol. 2013 Dec 2;4:361. doi: 10.3389/fmicb.2013.00361. eCollection 2013.

29.

Variability of subseafloor viral abundance at the geographically and geologically distinct continental margins.

Yanagawa K, Morono Y, Yoshida-Takashima Y, Eitoku M, Sunamura M, Inagaki F, Imachi H, Takai K, Nunoura T.

FEMS Microbiol Ecol. 2014 Apr;88(1):60-8. doi: 10.1111/1574-6941.12269. Epub 2013 Dec 23.

30.

An improved cell separation technique for marine subsurface sediments: applications for high-throughput analysis using flow cytometry and cell sorting.

Morono Y, Terada T, Kallmeyer J, Inagaki F.

Environ Microbiol. 2013 Oct;15(10):2841-9. doi: 10.1111/1462-2920.12153. Epub 2013 Jun 3.

31.

Distribution of dehalogenation activity in subseafloor sediments of the Nankai Trough subduction zone.

Futagami T, Morono Y, Terada T, Kaksonen AH, Inagaki F.

Philos Trans R Soc Lond B Biol Sci. 2013 Mar 11;368(1616):20120249. doi: 10.1098/rstb.2012.0249. Print 2013 Apr 19.

32.

Metabolically active microbial communities in marine sediment under high-CO(2) and low-pH extremes.

Yanagawa K, Morono Y, de Beer D, Haeckel M, Sunamura M, Futagami T, Hoshino T, Terada T, Nakamura K, Urabe T, Rehder G, Boetius A, Inagaki F.

ISME J. 2013 Mar;7(3):555-67. doi: 10.1038/ismej.2012.124. Epub 2012 Oct 25.

33.

Cell-specific thioautotrophic productivity of epsilon-proteobacterial epibionts associated with Shinkaia crosnieri.

Watsuji TO, Nishizawa M, Morono Y, Hirayama H, Kawagucci S, Takahata N, Sano Y, Takai K.

PLoS One. 2012;7(10):e46282. doi: 10.1371/journal.pone.0046282. Epub 2012 Oct 2.

34.

Radical gas-based DNA decontamination for ultra-sensitive molecular experiments.

Morono Y, Yamamoto K, Inagaki F.

Microbes Environ. 2012;27(4):512-4. Epub 2012 Apr 18.

35.

Characterization of Metabolically Active Bacterial Populations in Subseafloor Nankai Trough Sediments above, within, and below the Sulfate-Methane Transition Zone.

Mills HJ, Reese BK, Shepard AK, Riedinger N, Dowd SE, Morono Y, Inagaki F.

Front Microbiol. 2012 Apr 3;3:113. doi: 10.3389/fmicb.2012.00113. eCollection 2012.

36.

Bacterial dominance in subseafloor sediments characterized by methane hydrates.

Briggs BR, Inagaki F, Morono Y, Futagami T, Huguet C, Rosell-Mele A, Lorenson TD, Colwell FS.

FEMS Microbiol Ecol. 2012 Jul;81(1):88-98. doi: 10.1111/j.1574-6941.2012.01311.x. Epub 2012 Feb 16.

37.

Comparative study of subseafloor microbial community structures in deeply buried coral fossils and sediment matrices from the challenger mound in the porcupine seabight.

Hoshino T, Morono Y, Terada T, Imachi H, Ferdelman TG, Inagaki F.

Front Microbiol. 2011 Nov 17;2:231. doi: 10.3389/fmicb.2011.00231. eCollection 2011.

38.

A new DNA extraction method by controlled alkaline treatments from consolidated subsurface sediments.

Kouduka M, Suko T, Morono Y, Inagaki F, Ito K, Suzuki Y.

FEMS Microbiol Lett. 2012 Jan;326(1):47-54. doi: 10.1111/j.1574-6968.2011.02437.x. Epub 2011 Nov 23.

39.

Carbon and nitrogen assimilation in deep subseafloor microbial cells.

Morono Y, Terada T, Nishizawa M, Ito M, Hillion F, Takahata N, Sano Y, Inagaki F.

Proc Natl Acad Sci U S A. 2011 Nov 8;108(45):18295-300. doi: 10.1073/pnas.1107763108. Epub 2011 Oct 10.

40.

Cultivation of methanogenic community from subseafloor sediments using a continuous-flow bioreactor.

Imachi H, Aoi K, Tasumi E, Saito Y, Yamanaka Y, Saito Y, Yamaguchi T, Tomaru H, Takeuchi R, Morono Y, Inagaki F, Takai K.

ISME J. 2011 Dec;5(12):1913-25. doi: 10.1038/ismej.2011.64. Epub 2011 Jun 9.

41.

Dehalogenation activities and distribution of reductive dehalogenase homologous genes in marine subsurface sediments.

Futagami T, Morono Y, Terada T, Kaksonen AH, Inagaki F.

Appl Environ Microbiol. 2009 Nov;75(21):6905-9. doi: 10.1128/AEM.01124-09. Epub 2009 Sep 11.

42.

Discriminative detection and enumeration of microbial life in marine subsurface sediments.

Morono Y, Terada T, Masui N, Inagaki F.

ISME J. 2009 May;3(5):503-11. doi: 10.1038/ismej.2009.1. Epub 2009 Feb 12.

PMID:
19212428
43.

Significant contribution of Archaea to extant biomass in marine subsurface sediments.

Lipp JS, Morono Y, Inagaki F, Hinrichs KU.

Nature. 2008 Aug 21;454(7207):991-4. doi: 10.1038/nature07174. Epub 2008 Jul 20.

PMID:
18641632
44.

Phylogenetic and enzymatic diversity of deep subseafloor aerobic microorganisms in organics- and methane-rich sediments off Shimokita Peninsula.

Kobayashi T, Koide O, Mori K, Shimamura S, Matsuura T, Miura T, Takaki Y, Morono Y, Nunoura T, Imachi H, Inagaki F, Takai K, Horikoshi K.

Extremophiles. 2008 Jul;12(4):519-27. doi: 10.1007/s00792-008-0157-7. Epub 2008 Mar 27.

PMID:
18368287
45.

"Mark the gene": a method for nondestructive introduction of marker sequences inside the gene frame of transgenes.

Morono Y, Kitagawa W, Kimura N, Noda N, Nakamura K, Kamagata Y.

Appl Environ Microbiol. 2007 Aug;73(15):4915-21. Epub 2007 May 25.

46.

Structural analysis of a biofilm which enhances carbon steel corrosion in nutritionally poor aquatic environments.

Tanji Y, Morono Y, Soejima A, Hori K, Unno H.

J Biosci Bioeng. 1999;88(5):551-6.

PMID:
16232660
47.

Addition of aromatic substrates restores trichloroethylene degradation activity in Pseudomonas putida F1.

Morono Y, Unno H, Tanji Y, Hori K.

Appl Environ Microbiol. 2004 May;70(5):2830-5.

48.

Application of glutaraldehyde for the staining of esterase-active cells with carboxyfluorescein diacetate.

Morono Y, Takano S, Miyanaga K, Tanji Y, Unno H, Hori K.

Biotechnol Lett. 2004 Mar;26(5):379-83.

PMID:
15104134

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